RNA id: XM_007249265.2


Basic Information

Item Value
RNA id XM_007249265.2
length 1579
RNA type mRNA
GC content 0.50
exon number 15
gene id ilf2
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 23942554 ~ 23948993 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCCCTGCTGCTCTTTCagctttagctcagctcagctcgtctcagcagcagcggcggctcCGGGTGCCGGTGACCCATTTTcatcttttctctgttttataaAGCTGCCAACACGTCTTACGCAATGAGAGGCGATCGTGGAAGGGGCCGTGGTGGTCGCTTCGGCTCCCGTGGAGGTCTAGTTCAGGGGTACCGCCCTTTTGTCCCACACATACCGTTTGACTTTTATGTTTGTGAGATGGCTTTTCCACGAGTGAAGCCGGCACCTGATGAGACTGCATTTAGTGAGGCTCTTCTGAAGCGCAACCAAGATCTCACTCCAACACCATCTGAGCAGTCTTCCATTTTGTCCTTGGTAACTAAGATTAACAACGTCATTGATAATTTGATTGTGGCACCTGGAAACTTTGAAGTGCAAATTGAGGAGGTGCGGCAAGTTGGCTCATACAAAAAGGGTACAATGACAACAGGACACAATGTAGCCGATCTTGTGGTTATTCTGAAGATTCTTCCTACTtTGGAGGCAGTTGCAGCCTTGGGAAACAAAGTGGTGGAGACTCTCCGCACCCAGGACCCAGCAGAGGtgctCTCTATGCTTACCAACGAGACTGGATTTGAGATCAGTTCTGCTGATGCTACAGTAAAGATCCTGATCACTACTGTCCCCCCTAATCTGCGCAAACTCGACCCAGAACTCCACCTTGACATCAAGGTGCTGCAGAGTGCTCTCGCTGCTATTCGCCATGCTCGCTGGTTTGAGGAGAATGCCTCACAGTCAACGGTGAAGGTTTTGATCCGCTTACTGAAAGACCTGCGAGTACGATTTCCAGGGTTTGAGCCTCTTACCCCCTGGATATTGGATCTCCTGGGACATTCTGCTGTCATGAATAACCCATCCAGACAGCCCCTTTCACTGAACGTTGCCTACAGGCGCTGTCTGCAGATGCTAGCAGCTGGGCTATTTCTGCCAGGCTCTGTAGGAATCACTGATCCATGTGAAAGTGGAAACTTCCGTGTGCACACTGTAATGACCCTAGAGCAGCAGGACATGGTATGTTTTACAGCCCAGACACTAGTGAGGGTCCTTTCTCACGGTGGCTACAGGAAGATCTTGGGACTTGAGGGCGATGCCAGCTATCTGGCCTCTGAGATGTCCACCTGGGACGGAGTGATCGTCACTCCATCTGAGAAAGCCTATGAGAAGCCTCCAGAGCGcaaggaagaggaggatgaagctttggaagagggaggagaaggagaagatgAAAGCATGGAGACACAGGAGTGATGTTTTTAAACTACACCAGACATCTGCCAGTTGTTTCCCATTCAACCCCCCAGGTCCCCAAGGCCTGTTCATCCTCTCTCCCCTTCTATGAATGTAGCCTGTGGCAGCAGACTATATGGACCAAAAGACACCAGCTGCACCAACCATCTATCTGCTGTCAGTCTCCTCAACCTGTGGCTTCTGTTTTACTAGGGGAGGGAAGTTGAACCCCCATCGGTTTCTAATGtggacttttgtttgttttttattttgtaccaGTAACTGATAaagtttttatttccttttattaCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0006955 immune response biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13089 ILF2; interleukin enhancer-binding factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270745 lncRNA upstream 156595 23782931 ~ 23785959 (+) True G199424
TU270761 lncRNA upstream 172090 23769396 ~ 23770464 (+) True G199436
TU270759 lncRNA upstream 174122 23768206 ~ 23768432 (+) True G199434
TU270749 lncRNA upstream 248741 23691498 ~ 23693813 (+) False G199426
TU270797 lncRNA downstream 172275 24121268 ~ 24173926 (+) True G199469
TU270883 lncRNA downstream 271368 24220361 ~ 24220614 (+) True G199546
TU270940 lncRNA downstream 488812 24437805 ~ 24438039 (+) True G199588
TU270978 lncRNA downstream 1134991 25083984 ~ 25299692 (+) True G199625
TU270979 lncRNA downstream 1137957 25086950 ~ 25112275 (+) False G199625
XM_007249268.2 mRNA upstream 10514 23898683 ~ 23932040 (+) True hpcal4
XM_022683196.1 mRNA upstream 186997 23688512 ~ 23755557 (+) False trit1
XM_007249276.3 mRNA upstream 186997 23688513 ~ 23755557 (+) True trit1
XM_007249274.3 mRNA upstream 257489 23678958 ~ 23685065 (+) True mycl
XM_007249279.3 mRNA upstream 355635 23536415 ~ 23586919 (+) False kiaa1522
XM_007249264.3 mRNA downstream 292371 24241364 ~ 24251389 (+) True LOC103034043
XM_022683200.1 mRNA downstream 699040 24648033 ~ 25075791 (+) True csmd2
XM_015608266.2 mRNA downstream 1421508 25370501 ~ 25377202 (+) True trappc3
XM_022683203.1 mRNA downstream 1467575 25416568 ~ 25526086 (+) True col8a2
XM_015608253.2 mRNA downstream 1467575 25416568 ~ 25526086 (+) False col8a2
TU270302 other upstream 1719518 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 2559554 21358464 ~ 21383000 (+) False LOC103037930
TU269957 other upstream 3139664 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 3853567 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 3864259 20053051 ~ 20078295 (+) False fndc5
TU271111 other downstream 1668935 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 1669041 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 1669041 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 2661436 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 3335227 27284220 ~ 27284567 (+) True G200104

Expression Profile