RNA id: XM_007249288.3


Basic Information

Item Value
RNA id XM_007249288.3
length 1779
RNA type mRNA
GC content 0.47
exon number 12
gene id bzw2
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 23441994 ~ 23469531 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAGCACAGAGCAGTGCAAGGCTGGCCGGAGCAGTCACTTTCAGCTGGATCGTTCACTGAGACACACAGAGCTCACATTAACTCTACAGTAGAACGGACCTCACAGctgGACTTTTATGAATACCGGTAAGCAGCAGAAGCCAGTGCTTACAGGCCAACGGTTTAAGACCAGGAAAAGGGaTGAAAAGGAGAAGTTTGAGCCCACAGTTTTCCGAGACACAATTGTTCAGGGCCTCAACGAAGCTGGGGGGGATCTCGATGCTGTAGCCAAATTTCTGGATGTCACAGGGTCAAAATTGGACTACCGTCGCTATGCTGACACCCTGTTTGACACCCTCATTGCCGGAAGCATGCTTGCTCCTGGAGGGACTCGCATGGATGAAGGGGACAGGACCAAGGTGACGGATCACTGTGTGTTTACCGCAGAGGAAAATCAAACTGCCCTTCGCGGTTATGCTCAGgttttcaaTAAACTTATCAGGAGATACAAATATCTAGAGAAGGCGTTTGAGGAGGAAATCAAAAAGTTGCTCCTCTTCCTGAAGGCCTTCAGTGAGTCTGAGCAGACCAAACTGGCCATGCTGACTGGTATCCTGCTGGCAAACAACAGTCTGCCACCTCAGATTCTAACCAGCCTTTTCAGTGACAATATAGTAAAGGAAGGCATTGCCGCCTCCTTTGCAGTGAAGTTGTTCAAGGCTTGGATAGCTGAGAGAGATGCCAATGCAGTGACTTCAGCCCTGCGAAAGGCCAGTTTGGATAAGAGACTCCTGGAACTCTTCCCTGCGAACAAGCAGAATGTGGAGCACTTCTCTAAGTACTTTAATGAGGCCAGCCTGAAGGAGCTGTCAGACTTCCTGAGGGTACAGCAGTCTTTGGGCACCCGTAAGGAGCTGCAGAAAGAACTGCAGGAGCGTCTGTCTCAGGAATGCCCAATCAGCGAGATTGTAGTGTATGTGAAGGAGGAGATGAAAAAGAATGATCTGCAGGAGCATGCTGTGATTGGCTTACTGTGGTCCTGCCTGATGAATGCTGTGGAGTGGAATAAGAAGGAAGAGCTGGTTACTGACCAAGCTCTCAAACACCTGAAGCACTACGCTCCCCTGCTGGCCATGTTTAGTACTCAGGGCCAATCAGAACTGGTCTTGCTACTCAAGATTCAGGAGTACTGTTACGACAACATCCACTTTATGAAATCCTTCTCCAAGATAGTGGTGCTGTTCTACAAAgccGATGTCCTTAGTGAGGAAGCCATTTTGAAGTGGTACAAAGATGCCCATGCTGCCAAAGGGAAAAGCGTCTTTCTGGAGCAGATGAAGAAGTTTGTGGAGTGGCTTCAGAATGCTGAGGAAGAGTCTGAGTCTGAGAAGGAGGAGGATTAGCAGCCGGGGTTCTGAAGATCTACTCTTCACAGTCTACTCTTTGTGGCCAGCCTGTTAGTGCACTGTAGTCTCCGTGTCATTGCGTATTGCCTAGTAAGAGGTGTCCTTAGACACTCAAGCACAACTCAAGAAAAAGCCATGGACCTCTGGGCTCTACGTCAAGAGTACAGGAGACGTCACATAGACAGCCTTTTaataacaaacaacacacaggcacacacacttTTTACCAATGCTGTTCAGGTACTGTGTGAAAGATGTCAGCTTCTGCAGTAGATTATCATTTTGACAAAGTCacttgtgtatgtatgtgattgctttttattaataaaaaggtgttttatatatgtattatgtcATTTACTTATCTGTATctattaaaattatttgaaacAGA

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007399 nervous system development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270661 lncRNA upstream 28084 23425878 ~ 23426084 (+) True G199362
TU270636 lncRNA upstream 117671 23336261 ~ 23336497 (+) True G199337
TU270632 lncRNA upstream 169744 23284140 ~ 23284424 (+) True G199333
TU270531 lncRNA upstream 284575 23165496 ~ 23169593 (+) True G199266
TU270512 lncRNA upstream 452683 22936494 ~ 23001485 (+) True G199250
TU270681 lncRNA downstream 118231 23587762 ~ 23593581 (+) True G199378
TU270735 lncRNA downstream 171017 23640548 ~ 23640780 (+) True G199417
TU270747 lncRNA downstream 221967 23691498 ~ 23692942 (+) True G199426
TU270749 lncRNA downstream 221967 23691498 ~ 23693813 (+) False G199426
TU270750 lncRNA downstream 221967 23691498 ~ 23693813 (+) False G199426
XM_007249292.3 mRNA upstream 221165 23230207 ~ 23233003 (+) True LOC103041859
XM_007249293.3 mRNA upstream 227097 23202682 ~ 23227071 (+) True scin
XM_007249297.3 mRNA upstream 258104 23183923 ~ 23196064 (+) True LOC103043314
XM_007249294.3 mRNA upstream 277430 23171731 ~ 23176738 (+) True c23h6orf62
XM_022683192.1 mRNA upstream 292949 23105565 ~ 23161219 (+) False ripor2
XM_007249285.3 mRNA downstream 2067 23471598 ~ 23477408 (+) True rbbp4
XM_022683194.1 mRNA downstream 17118 23486649 ~ 23586919 (+) True kiaa1522
XM_007249277.3 mRNA downstream 42243 23511774 ~ 23586919 (+) False kiaa1522
XM_007249279.3 mRNA downstream 66884 23536415 ~ 23586919 (+) False kiaa1522
XM_007249280.3 mRNA downstream 101964 23571495 ~ 23586919 (+) False kiaa1522
TU270302 other upstream 1231132 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 2071168 21358464 ~ 21383000 (+) False LOC103037930
TU269957 other upstream 2651278 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 3365181 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 3375873 20053051 ~ 20078295 (+) False fndc5
TU271111 other downstream 2148397 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 2148503 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 2148503 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 3140898 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 3814689 27284220 ~ 27284567 (+) True G200104

Expression Profile