RNA id: XM_015605832.2


Basic Information

Item Value
RNA id XM_015605832.2
length 2208
RNA type mRNA
GC content 0.44
exon number 8
gene id fuca1
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 22448746 ~ 22458878 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGAGCGGAAgagtaaagaagaaaaacaccGGTAACCGGTCCAACTCGATCTCAGTCCAGAAAGACCAGCCGCGCTCAGGCACGAGGTACTGTCTGCGCGGCTGTAGTTAGGTAGCCTACATTTCTCCGTTTACTTTAGACCGGCTGTCCCCCGCGCAGCTGTAGTTAGTTATAGTAAACATGGGTTCAGCGGCTCcgctctctctgctgctgctgaacgcggtgctgctgctgctgagcagCGTGTCCGGCAGCACAGCCCGCTACACCCCGGACTGGAAAAGCCTGGACGCCAGACCGCTCCCCTCCTGGTATGACCAGTCCAAATTCGGGATTTTCATCCACTGGGGGGTCTTCTCAGTACCGTCCTTCGGCAGCGAGTGGTTCTGGTGGTATTGGAAGGGTCAGAAAATTCCTGGCTACATCTGGTTCATGGATAAAAACTATCCTCCTGGATTCGAGTACGCAGAGTTTGCCCCTGGTTTCAAGGCAGAGTTTTGGGATCCAGATGAATGGGCTGAGATCTTTGAAGCTTCTGGGGCGAAATACATTGTGTTTACTTCAAAACACCACGAAGGCTTCACCAACTGGGGATCCCCAACTTCATGGAACTGGAACTCTGTTGATAACGGGCCTCACAGAGACATCGTCGGAGAGTTGGCAACTGCTGTTCGTAAACGAAAGTCTGTGCACTTTGGACTCTACCACTCCCTGTTTGAATGGTTTCACCCTCTTTACCTGAGCGACAAGGCCTCGAACTTCACAAAACAAGACTTTGTTTCCAGCAAAGTCATGCCTGAGTTCTATGATCTGGTCACAAGGTACAAGCCAGAACTAATATGGTCTGATGGCGATTGGGAAGCCCCTGATACTTACTGGAACTCCACAGAATTCCTAGCTTGGCTCTACAATGACAGTCCCGTCAAGGATGTAATTGTGGTCAATGACCGGTGGGGACAGGGGTGCTACTGTAAACATGGTGGTTACTACAACTGTGCTGACAAGTACACTCCGACTGAGCCACCCAAGCACAAATGGGAGAAATGTAATTCAATGGATAAATACTCCTGGGGTTATCGGCGGAACATGAAATTCAGCGATGTGTTGGATTTACCTGCCATTATACAGGACTTCGTCTACACCGTGGCTCTTGGAGGGAATTATTTGCTCAACATCGGGCCTGCATCAGATGGCAAGATCCCAATCGTGTTTGAAGAACGTCTCCGATCCATTGGTGCATGGTTGAAAATCAATGGGGAGGCTATTTATGGCACCAAACCATGGAGGCTCTCCACTGAGAATGGCACTGTGCCCGTCTgGTACACTTCAACAGACTCTGCTGTGTATGCCATCTTTCTAACCAATCCAGGGCAGTACTCTTTTCAACTCTTTACCCCTGTAACCTCGGAGAAAACCGTGGTGACACTATTGGGCATCCCTGACCCTCTAAAATGGGCACCTCTGCATTCATCTGGCCTCGTCATGCTTCTGCCAGAACTGCCCTACACTCCTGCCCAGGCGTGGGTCATCAAAATGCAAGGAGTAGCTTAGCACTGTgatgacatttttaaatattaattttgtgTAAGTGACCTTCGACAATCAGGGATTTTATATAGACGTGAAGATTAATGTGTAatttcttgactcatcactttACTTGGCTCATAAGGGATTTAATAATTTGAatgtaatttttacattttttccagaCAGCGCACATTGTAAACCTGGCTATGTGAAGCTGAATAGCGCACTGTTGTTTAGTAGATTATAGATTTTCTAAAAGTGGACACagttagttaaaataaacattaaaaagttgGTACTTTGTATCAGTGACAATGTGTGTCTTTGCTTTAGGGTGGACCAGGGAAtgagaaatttatttttttacttttccagttttttattggacatgCTGCCTTACTGTATTTGTCCATgccactttttactgtttttaatgatatgcATTTTATAGTTAACCCTTGGGAAAATAAATGTTCCAAATATGGGTATTAGGGTATTATTGCACTGTCACTATCCTTGTTAATTCTATGTGTTTACaaatcaaatcttttttttttgctgacatTTTACAGAATAGCACATAATATTGCAAGactgaatgaaatattctaaacattgtaaaaaaaaaaaaaaatctgaaactgTCACAATAAACCAGATTCTTTTTTGTCTCATTGA

Function

GO:

id name namespace
GO:0006004 fucose metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0004560 alpha-L-fucosidase activity molecular_function
GO:0042806 fucose binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651711.1 lncRNA upstream 26371 22414247 ~ 22422376 (+) True LOC111195530
TU270352 lncRNA upstream 56182 22391366 ~ 22392565 (+) True G199137
TU270314 lncRNA upstream 148276 22299894 ~ 22300471 (+) True G199103
TU270308 lncRNA upstream 186972 22261114 ~ 22261775 (+) True G199097
TU270301 lncRNA upstream 230360 22215879 ~ 22218387 (+) True G199090
TU270362 lncRNA downstream 18670 22477548 ~ 22481616 (+) False G199145
TU270365 lncRNA downstream 20975 22479853 ~ 22485763 (+) True G199145
TU270440 lncRNA downstream 220229 22679107 ~ 22684436 (+) True G199192
TU270447 lncRNA downstream 244633 22703511 ~ 22704656 (+) True G199197
TU270453 lncRNA downstream 247608 22706486 ~ 22709232 (+) True G199202
XM_007249324.3 mRNA upstream 3592 22438713 ~ 22445155 (+) True zbtb8b
XM_007249330.2 mRNA upstream 41054 22394609 ~ 22407693 (+) False LOC103026000
XM_007249329.3 mRNA upstream 41054 22394610 ~ 22407693 (+) True LOC103026000
XM_015605831.2 mRNA upstream 41054 22394610 ~ 22407693 (+) False LOC103026000
XM_022683182.1 mRNA upstream 76398 22313052 ~ 22372349 (+) False LOC103025175
XM_007249323.3 mRNA downstream 368 22459246 ~ 22474209 (+) True LOC103024228
XM_022683184.1 mRNA downstream 255281 22714159 ~ 22777841 (+) True LOC111195531
XM_022683185.1 mRNA downstream 266810 22725688 ~ 22777841 (+) False LOC111195531
XM_022683186.1 mRNA downstream 352891 22811769 ~ 22828432 (+) True LOC103021724
XM_007249311.3 mRNA downstream 371353 22830231 ~ 22869257 (+) True znf704
TU270302 other upstream 225711 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 1065747 21358464 ~ 21383000 (+) False LOC103037930
TU269957 other upstream 1645857 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 2359760 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 2370452 20053051 ~ 20078295 (+) False fndc5
TU271111 other downstream 3159050 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 3159156 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 3159156 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 4151551 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 4825342 27284220 ~ 27284567 (+) True G200104

Expression Profile