RNA id: XM_022683182.1


Basic Information

Item Value
RNA id XM_022683182.1
length 2625
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC103025175
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 22312255 ~ 22372349 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGAGGGGACGTGACTCAAAGCggttcTGACTAGGGGCCTTGGTGTTGTCGCTGTGCACACAGAGACTCGTCGCCATGGGAAAGCAGAACAGCAAGCTCAGGCCCGAGATGCTACAGGACCTGAGAGAGAACACTGAGTTTTCTGACCATGAGCTGCAGGAGTGGTACAAGgGGTTCCTTAAAGATTGCCCAAGTGGCCACCTAAATGTTGAAGAGTTTAAGAAGATCTATGCCAACTTCTTCCCATACGGTGATGCCTCCAAGTTCGCAGAGCACGTCTTCCGCACCTTTGATACCAACAACGACGGCACCATCGACTTCCGGGAGTTCATCATCGCTCTGAGTGTGACATCACGGGGAAAGCTGGATCAGAAGCTGAAATGGGCCTTCAGCATGTACGACCTGGACGGCAACGGCTACATCAGCCGCGACGAGATGCTGGAGATTGTGCAGGCCATCTATAAGATGGTGTCGTCGGTGATGAAAATGCCTGAGGATGAGTCCACACCGGAGAAGAGGACAGATAAGATCTTCAGACAAATGGACTTGAACAATGATGGTAAGCTCTCTTTGGAGGAGTTCATAAAAGGTGCCAAAAGTGACCCCTCCATTGTGCGGCTACTGCAGTGCGACCCCAGCAGTGCCTCGCAGTTCTAAGTCCCCCCGTACCCCACCCCAGAGGAGCAGACGCTCAATGCATGAAGGTCGTCGTCTCTTATTGTTATTAGTGTTCCGGATGGATGagtttaaagagaaaaaaaagtgcatcAGTTttcctttcagttttttttttttcttttgaaaaagGACACGCATACATCTGAAGAACAAAAAGGCAACACCTGCAAACGACGTCTCGTGTCTGCTGCGCTGCGTCTGTCCGTGTCTCTGTGGAGGCCCGTGGAGCGCTCGGCTCACAGCCCCGCTACTGACCCTGCTCCAGGCTCCTGGTTTTTGGGAGGGACTGTTCCCTGGGAATTGTGCATGCATGCCCCTCCACCAGCTATTCCACCACGCCCCCTCCACCAtgaccaccaccactaccaccaccactcCTGCCCAGCCTCACCCCTCCCTTCACCACTGCCCTCCCTTCTCCTCACTCCACCTTTCGTGTTTGATATGtctgctcttttttctttttcttttttttttttttgttctctgaTGTCACAGTTCTCCTTTTTATATCCATACtgatgtgtatatacagtataaatacgtATAGGACATATTAGAGAAAAGGCGACTGTAGATGTATTTTTACTCACTTGCATTCAAAGACAGTATTGTGTAGCTTAAGGAAGTATTCAAATCCGTAGCCTCCAGTAGATGCAAACTGATGGACTGAGAGTTGGGATTTGTTTCTGATGTTGTTTCTATGGCGCTTATGATCTTTCTTTTGTTAAGAGAAGGCTGAACATcccattgttttgttttgttttattttgttgattttgatttgaatttttttgtacatatgtACATGTATTGTTTACTCCAtatgttctttatttatttttttgcattttttcttgAGTTGTTATTTGAACAAATCTGTGAAATCATCAGTGCTTGATTCTCTCCGGGCCGGTGGGAGTTAACCGCTGCTGATTTTGCTGTGAAGGTCTTATTTTGTTACTGCTGAACAGAGATATTAGAGAGACTTGAAGCTCTATCCGGCGTCTGCGGTGAACTGTTATAAGCTGACGGCTTGGCCAAGCATTGTGTGACACATTCGCATCAGGGGATACATTCCATTGTGTCCAGAATCAGATGCTTGTAGCACATATGATCTGAGGCGCTTTGTGCGTATGCACGCGTGAGAATGTGAGTGTGGCGTACGCATGTTTTCAGTGcatgtatgtgcgtgtgtggaTGTGCGAATGGGTGTGTTTGTATGCGCGTTAACTTTATAGTACCACTTTGTGTCGTTAAAAACTACGGTACGTTTTTAAggtaatgctgtgttttttgaaCCCCTGTTCTAAGTGGCAATTTCCTCTGCACCACGTAATACTCTGAATTTTGCAAAAGGTACTCGCAAAAGATCTGTTTGTAATTTCATAATCTTTATCGTACAACACAGAAGGAATGTACAGCCCAGTGATTCAGGATTTCACATCCCACCCACAAGCCAAATTGCATCTGTAATCCAAGAGGAGAGGTATCAGAGGTATCGCACGACAGCACTAAGGGCTTGTTTCCACTCTTGACTGAAGGAgtgtacaaaaatatatcaCTGCTTTCATCTTTCTATCTCGTGCATCAACGTCCGAGAGCATATCCCCTCATGCACACCagtccccccccccacacactaTTTCAATCCTTCAGTCACTCTTCTCCTGCCCTTTGTGCGCACACAGTAATGGAGCTTCAGTCCCTGCAGCTCTAATATCAACACTGTCCCACCTTTTCTCGCACTACAGCTCTTAGTATCTCAGCATCTCATCGCTTCCATATTTGTACTGAGAcgatatacatataatatatatgactGCACCCTTATGGCAACCCCATGTCCCTCTCTTTTATGTTGCATGGAAACCTCATGCGAGGACGTCATGATTGTCCCCCCCTTTGCTGATACTGATAATGACAAATATACTTATGTGTTTAAAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270314 lncRNA upstream 12581 22299894 ~ 22300471 (+) True G199103
TU270308 lncRNA upstream 51277 22261114 ~ 22261775 (+) True G199097
TU270301 lncRNA upstream 94665 22215879 ~ 22218387 (+) True G199090
TU270257 lncRNA upstream 112341 22197778 ~ 22200711 (+) False G199056
TU270352 lncRNA downstream 19017 22391366 ~ 22392565 (+) True G199137
XR_002651711.1 lncRNA downstream 41898 22414247 ~ 22422376 (+) True LOC111195530
TU270362 lncRNA downstream 105199 22477548 ~ 22481616 (+) False G199145
TU270365 lncRNA downstream 107504 22479853 ~ 22485763 (+) True G199145
TU270440 lncRNA downstream 306758 22679107 ~ 22684436 (+) True G199192
XM_007249331.3 mRNA upstream 61012 22227122 ~ 22252040 (+) True LOC103026526
XM_015605813.2 mRNA upstream 104014 22201552 ~ 22209038 (+) True LOC103028033
XM_007249337.3 mRNA upstream 104014 22201579 ~ 22209038 (+) False LOC103028033
XM_007249339.3 mRNA upstream 121900 22176880 ~ 22191152 (+) True LOC103028646
XM_022683442.1 mRNA upstream 143194 22160809 ~ 22169858 (+) True mtdh
XM_007249330.2 mRNA downstream 22260 22394609 ~ 22407693 (+) False LOC103026000
XM_007249329.3 mRNA downstream 22261 22394610 ~ 22407693 (+) True LOC103026000
XM_015605831.2 mRNA downstream 22261 22394610 ~ 22407693 (+) False LOC103026000
XM_007249324.3 mRNA downstream 66364 22438713 ~ 22445155 (+) True zbtb8b
XM_022683183.1 mRNA downstream 76397 22448746 ~ 22458878 (+) True fuca1
TU270302 other upstream 90016 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 930052 21358464 ~ 21383000 (+) False LOC103037930
TU269957 other upstream 1510162 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 2224065 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 2234757 20053051 ~ 20078295 (+) False fndc5
TU271111 other downstream 3245579 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 3245685 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 3245685 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 4238080 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 4911871 27284220 ~ 27284567 (+) True G200104

Expression Profile