RNA id: XM_007249375.3


Basic Information

Item Value
RNA id XM_007249375.3
length 5836
RNA type mRNA
GC content 0.47
exon number 28
gene id LOC103037930
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 21358464 ~ 21383000 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGCGTGCGGAAGGAATTTAGCGGGACTGAGAGTTGGTTAGCTGCAGCgcagactcacacacaccttattttttattctcttttgcaCTTCAGAAAACGATAATCGCCGTGTCGCCGTGGCTGTGCATGGACCGTGCTGTGTGACCGGCTGCTGACTGCAGAGTCTGCGGGCCCTGAGCAGAGGTCTGAGACATGGCTGCCTCCCCTCAGTCTCCTGAAAAAGAAGGTACACTGATGGAGAGCACATCCCCGGTTGGAGAGGACCCAGCGGCCTGTCACAGTGGTGATGTTCATTCCACTGATGGCAAAGACAATGATACATTAGATGATCATTCCAACTCACAGTctgcaaaagaagaagaatgcgCTTCGGAAGAAAACCAGGTGGAAGagggtgaggaggaggaggatgttGAAGGGAAGTCCGCAATAGAAAACGTCAACAACAAGCAACAAGAGGACCAACAGATGGATTGCGATCAGAAGGAGGCAAGTGAGGAAAACATGAAGgtcaaaaaaaatctaattagcTCAGGTGAAGAGAGGGACAAGGACGAGATACAACCCCAAGGTGAGGAGGCAAACAGAGATTTGGAAAAAGAGGATGCTGAGCATCATCTGGAAAAGGCAAAGGAGAAGAAAACTGATAAAGAGGAACAGAATCAACTTGATGAGGCGAGGCATGGAAACCTCATCCAGGAGACAGACCAGCAGGACACCACCGGGCAGCCTCAGGTGGATATAGTGacagaacacaaaaaaacagaagacaGCACAGGTGAGGAGGAAGGCATAGATGtcacaagacagacagacagaacttTTGTGATTAAAGAAAGTGAACAAAAACTGGAAGATGAGACGGACAGAACTTGTGCAGAAAACACTACAGAACACATTACGTTTCAAATGAGACAGGAGAAAGAGAAGCACAACATACCAGAAGAGATGGAAAGGCCAGAGGATGATGAGCCAAGTACTGAACAGGAAGACAGAGGGACAGTTGATGAAGAATCCACTGAATCACCAATGGATATTGATCACACAATTGAAAAGATGAAGGAGGATATTCCAGATGATTTTGATTCCTCTAATTCACAGGGCAAAGCTGAAAGTCCTTCTCAGGAACTAGGGCCTGAATTGAAGCATTCTGATAGTCAGGACCAGTCTAATGTGTCCTCTGAAGATGCGTCATCAAACAGATCCGAAAACCAGACCACCCAGGAGCTAAAGGATGAGATGGTGGAGTCTTCTATAGAAACACCTGGTCAGCCAGTGGTGGAGGCTGAGAAGATGGATTTTGAGGACTCTGGTGTCCTTTCTGTGAAAGTTAAAGATGAGCCTATGGATGAGGAATATGAAAAAGCTCTGACACTTCAGGATCCACCTTCAAAAATCAAGGATGAGCCAGACACAAGTGAAGAATGCATCCAGAAACCTGAAGAAGAGTTCaagatcagtgcagtgttctcaGTTGGGAAAAATCCTGCATCTTCAGGGACCAGCAGCACCTCAACAAAGTCCACCACCAACTCCCCTGCTCCTGCTCTGACTCCAGCCAGctctctgtgtgtggtgtgttcagGCTGTAAGAAAGTTCTCCTTAAGGGCCAAACGGCGTTCCAGCGAAAGGGCTCTCCCCAGCTCTACTGCTCACCACAGTGTCTCTGCACTACAGCAACGGACCTGATGACCAAGTCTATCCctaaaaaaacttgtcattacTGCCTCAGAGAGATTTCCAACCCAAAGGATGTAATCATTGCTCCGGTTGACTCAGCAGGAGCAGTAAAGGACTTCTGCAGTCAGAAGTGCCTCAGCGCCTTTAACTTCAAAAGGGACAGTGCAAAAGCTTCACTTGGAGGCAGCTCTAAAAGCACGAAGTGCAGCATGTGCCAAAAAGCCTGCACTACTCGTCATGAGGTTAATTTCTTGGGCAGTGTTCATAAATTGTGCAGTGATTTCTGCTTCAATCAATTCCGCTCCTCCAATAAGCTCACCATGAACTGCTGTGTCCAGTGTGGAGGCTATTGTTACAGTGGAGATGGTCAGTGCCACTGTATGGTAGTAGAAGGCACTGTCAAAAAGTTTTGCAACCAGAACTGCGTCTCTGTCTACAAAAAGAAATATGGGAAGCCTGTATCGTGCACAATGTGTCGAGGTTATCACTCTATGCAAGAGATGGTGgaaaacataaacacagagGGCAGCAGAGAGCTATTCTGCTCCACTGCATGTGTGACTGCATACAAAGTACAGTCTGTCAGCTCATCAGGTGCTGCAGTGGAATGCAACAACTGCAAGCTCGTTAATGTGCCTCAGTACCACCTTGCCATGTCAGATAGTACGATCCGCAACTTCTGCTCCTTACCTTGTGTGGTGTCCTTTCAGGATTCCTTTAATAAGACAAACTCTCACAACCAGCTGAATGTTGCACCATCTCTGAGCACCGCTGTGCCTCAGTCTGCTCCAAAGCTTGCCTCCACCAAACCTGTTTCTGCAGAGCCCAGCTCCTCTGGAGCTCCTCAAATCCCAGCAGTGACCAAAATTCCATGTGCACAGTGTCAGCGCTCCTTCTTCCGCAAGCCTGAGCTGCTGGACTTTAAGGGCAAGATGTATGTGTTCTGTGATAAGAGTTGTATTGACGAGTTCAGGAGGACCAACTATATTATGGCACAGTGTGTGTATTGCAAAATCGACAAGGTGGTGAAGGAGATAAAGAGGATTAACAACACAGACTGCTCTTTCTGCAGTGAGGGCTGCAAGTTACTCTACAAGCATGACCTTGTCAAACGCTGGGGGAAAAAGCACTGTCGCAACTGCCTCTACTGCAGCGGCACCTCTCAGACTTTGGTCACCAGCGTTTTTTCAGGCAAGCAGGAGGAGTTCTGTGGAAATGAGTGCTTGTCACAGTACACGCTGTTATTCTGCCAGGTGGCTAAATGCAGCATGTGCAAGCGTGCCAAGAAGATGGTGGAGTCTGTGAAGTGGCTGGGAGAGAAGAAGCACTTTTGTAGCCTGCAGTGTCTGATGTACTTCTGTAGTCTGCAGGGTAACTCTACAGCTGCCGTCAGAGCTTCTGTCAAACCCACAGTTACACAGCCTACCACTGTACAGCCTGCAGTCACACAAGCACCAGTCTCCACCACCCCTGTGCTCCAACCTGCACCCAGCACTTTGACCACCCAGACATCAGCGGTTAAAACTGAGGACACACCTGTAATTGCCAATGTTATATCATTATCTAACGCCACTAACGGGCAGCCTAATGTCCTCGGAAGTGCTGCCTTGCAAGGGGCTGTGCCTTCTTGTGTGAAGCTGATAGGACATGCCAGCACACAGACAGACGCTCTGAAAATACCCAGTGCCCCAACACCCAGACTACTAAAAAACAAAGCTTTGCTCTGTAAACCCATGAGCCAGAACAAAGGAACATCCTGCAAACCCAATACGTGTGATGTGAATCTACAAACAGATATAGCCTTGCCTGACATATTAGTGTTACCCATACCAGTGCCAGTGTATGTTCCTGTACCCATGAATCTCTACACACAGTTTACACCACATGCTATGGGACTTCCTCTGCCGGTGCCCGTTCCCATGTTTCTGCCCACAACATTGGACAGTGCTGAGAAGATAGTGGAAACCATTCAGAAGATCAAAGAAAAGATCCCAGATGACCCTCTAGAGGCAGACCTGATCATGATGGCTGAGATGGTGGCAGAGGACAATGAGAAAGATAAGACTGTCTCCCATGGAGACCAAGATGACAACTACATTGAAGATTTCGATTTGGACGCCCAGTCCGGTCATATAAGCTGGGACGAAGACAGCGTCTCTAGTGCCTCTCGATGTCGACAAACCTCAGAGTCTGAGAAAACTTATCCGCCTCCACCTCCACTCAAAAGAGGTCATCGGTCACCCAGCCCCAGCCCAAGCTCCACCTACACACCTGACTCCACCCCAACCCCACAAGAGCCACAGCTGGACCTGGAAGCAGACTTCCCTGCTGAATGTTTCGAGCTTCTGGAGCGGcgaaaggaaaaggaaaaaaccACAAGCCCCAGACAGCGACCTCGGCGAAAAGGACGGGATGGCTTCCCACAGAAAAAACGAGCACGCAAGCGTACAGGAGGCAGTCCACGATCACCATCTAACCTTCCCAACGTCTCAAAACTGCACCACGAGTATGGTGTCCAGGCGTGGAAAAGCTGGATACGCTGGAGGAACTCACAGCCCAATATAGAGGTGCCGAAGATGGGCTCTCGTAACATGATGTTGAAGGAGGACATGTTGCAGTGTagcacagctgagctgagctacgGTCTCTGCAAGTTCATCAGTGAAGCCCGGCGACCTAATGGAGAAATGTACCGTCCAGACAGCATCCATTACCTCTGCTTAGGCATCCAGCAGcaCCTCTTTGAAAATGGACGAATGGAGAACATTTTTGCTGATTTGTTCTACAGTAAATTCAGTCAGAGTATAAACACCCTTCTCAAAGACTGGAAACCAACTATTATGCCTAGTGGCTATGTGCACTCTCGAGTGGAAGAGGAGTATCTGTGGCAGTGTAAGCAGCTGGGTGCGTTTTCTCCCAGCGTGCTTCTCAACACCTTGCTCTACTTCTGCACTAAGTTCTTTAACTTTAAGACTGTGGCTCAGCACCGCCGTCTGTCCTTTGCACACGTCATGCGCTGCACTCGCTCTCACGGcaacagcaagacggcctgccTCCGCTTCTACCCCCCGGTGCCCAAAGAGGGCACTTCAAATGCAGAGGAAGTACCAGctaagaggaagagagaggatgaggaggatgaaGGTGTCGTGATGGAAATGCAGGAGAATGCTGGTAATCCGCTCCGCTGTCCTGTCAGGCTCTATGAGTTCTACCTCTCTAAATGCTCGTCCTCAGTAAAGCAGCGGACAAACATTTTCTATCTGCGTCCTGAGCGCTCCTGCATCCCCAACAGCCCGCTGTGGTTCTCCTCCTCGGCTCTAGATGACGAGGAGCTGGACATCATGCTCACGCGTATCCTGACAGTTCGAGAGCTGTATCTGGAGAGGGAGATACCAGCAAGTGTGTCCGACTCAGAAAACATCACAGATTCTGACTGAAACGGTCATGTACACACCCATACCTGAACTATTTTCAACTGAAACTTTACATCAGTGGAGCATCTACATGTGAACTGTCAGCAGGATATACAGTACATCCTCTTGTTAACGGTTGTAATGGTATTATACAAAACCAGAAATCTGACCAAATCTATTGTCCTTCCTCTCCGGTTCCAGAAAGTGCAGTGTCGGCACTCTGGAGTGGCTCATAATGAGAATGTTATCAAGCTCCAAATACAAAAAAGGCGCACAACTCTTTATAAAGAAAATTGGTCCTGTATTTTAAGTCACTCTGAAGTGCTTGTTGCCagtttcctttttgttttttttttatatctttttgttcttaattgtagcattttatgtttaaaatggtaAATGTTGATATAAAGGAAACAGAAGTGActgtaacaacaaaataaacagctACAACACAGTTTAAAGATCCCGTACAGGTCCTGACTGTTCTCAAAGACTGAGCATGATGCTAATGACTGTTGTACAATGCTTCTCCATTACACTCTTTGTGTATGCTCTTTGGTATCCTTGTGACTTCATTGAACTGCCATGTTTTCTGCAACACTAAAGAAACAAGACTGTCCGTTTCAAACTGCTGCCCGTATTCAGAAAGTGCGGATCATGCCTGTAAACAGAAGATTTTCCAAGATTTGTttcatgttctgtttttttatggatAAAAAGGTTTTGTGATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269992 lncRNA upstream 267563 21090756 ~ 21091031 (+) True G198848
TU269986 lncRNA upstream 298382 21060000 ~ 21060212 (+) True G198842
TU269983 lncRNA upstream 311705 21046592 ~ 21046889 (+) True G198839
TU269973 lncRNA upstream 427070 20931218 ~ 20931524 (+) True G198830
TU269962 lncRNA upstream 543023 20815141 ~ 20815571 (+) True G198820
TU270035 lncRNA downstream 15732 21398732 ~ 21399000 (+) True G198881
TU270105 lncRNA downstream 178002 21561002 ~ 21561215 (+) True G198939
TU270109 lncRNA downstream 236638 21619638 ~ 21619845 (+) True G198943
TU270113 lncRNA downstream 273416 21656416 ~ 21656764 (+) True G198947
TU270131 lncRNA downstream 422474 21805474 ~ 21805739 (+) True G198965
XM_015605816.2 mRNA upstream 2259 21351562 ~ 21356335 (+) True LOC107197622
XM_015605818.2 mRNA upstream 7497 21330005 ~ 21351097 (+) True LOC103038471
XM_015605819.2 mRNA upstream 7497 21330005 ~ 21351097 (+) False LOC103038471
XM_007249376.3 mRNA upstream 20163 21330005 ~ 21338431 (+) False LOC103038471
XM_007249420.3 mRNA upstream 1044613 20276631 ~ 20313981 (+) True lpcat1
XM_007249369.3 mRNA downstream 7138 21390138 ~ 21395528 (+) True otud6b
XM_022683172.1 mRNA downstream 8713 21391713 ~ 21395528 (+) False otud6b
XM_022683173.1 mRNA downstream 18489 21401489 ~ 21406189 (+) True lrrc69
XM_022683176.1 mRNA downstream 477578 21860578 ~ 21872452 (+) True fam92a
XM_007249360.3 mRNA downstream 477578 21860578 ~ 21872452 (+) False fam92a
TU269957 other upstream 555704 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 1269607 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 1280299 20053051 ~ 20078295 (+) False fndc5
TU269618 other upstream 2111198 19246972 ~ 19247396 (+) True G198540
TU269613 other upstream 2152936 19205077 ~ 19205658 (+) True G198535
TU270302 other downstream 836265 22219265 ~ 22223036 (+) True G199091
TU271111 other downstream 4234928 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 4235034 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 4235034 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 5227429 26610429 ~ 26613182 (+) False c23h18orf21

Expression Profile