RNA id: XM_015605818.2


Basic Information

Item Value
RNA id XM_015605818.2
length 2655
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC103038471
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 21330005 ~ 21351097 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCTTTGTTGCGCGGCTCTGTCAGCCATTTTACGAAGAGCAGTCGGTGTAGGACAGACGGTGGTGTGACTCTTAGTCGCTGAGTTTCTACTGTTTGTACCACTGAGtgtagttttatatttactgaaatCTATTTAACGGTTTTTACGCCCTAAAGCTCCAGCCATGTCTCGGGACCGGTTCAGGAACAACCGCGGAGGAGGATTCCAGCCACGCGGCCGCGGTGGGATGGGGATTGGAGGAGGGATGCGCGGAGGAATGGGGATGGGGATGAGAATGGGAAGTCCGAATTTCCGCAATCAGAACAATCCTCAGTTTCCCTTTCAGAACCGCGGCAACCAGATGAGCGGCGGTTTTAAACAGAACCAGGGGAATCAGCAGAACCAGGGGAATCAGCAGAACCAGGCGCAGACTCCTAAACAGACCACCCCCCAGAAACAGGACGGAGCTAACGCCGCACAGAAGCCCGAGATCAAATCTCCCCCACCATCAACACCACAGCCACAGCAGAAGACTCCACAGCCACAGGAGAAAACACCACAACAGCaaactcagcagcagcagcaacagaagACCCcgcaacaacaacagcagcagcaacagaagACCccacagcagcaacagcagccaAAACcgccgcagcagcagcaaggCCCGGCCCCCCAACAGAACAAACCCCCGGCACAGCAGACCCAGCAGCCGCAGGTCGGTAACGCAGGTCCGCCGAAACTGCAGTCGCCTCCGCCCAAAAACACCAACATGAAGCAGGAGCAAATAACCCCACAGAACCAGGCCCGAAAACCTCCACAGAGACCAAACGCTGGAAACAACCAGAAACCGCCCCAGGCTGAGCAGGAGTCGGCCTCGCACACGGAGTTGAAGGCGAAGCTGTCAATGCTGCGCAAACCTGGAGAGAAGACCTACACACAGCGATGCCGTTTGTTCATTGGAAACCTGCCCAATGATATCACTGAGGCAGAGTTCAGAAAGCTGTTTGCAAAGTATGGAGAGCCCAGTGAGACCTTCATCAACCAGGGCAAAGGTTTTGGATTCATCAGACTGGAGTCCCGTGCTGTAGCTGAGATCGCAAAAGCTGAACTGGATGACATACCAATGAAGGGCAGACCACTAAGGGTTCGCTTTGCAACTCACTCTGCTGCTCTGTCTGTGCGCAACCTGTCCCCCTTTGTCTCCAACGAGCTGCTCGAAGAGGCGTTCTCTCAGTTTGGTCAAGTCGAGAGAGCCATTGTCGTTGTCGATGACCGCGGACGCTCAACTGGAAAGGGAATTGTTGAGTTTGCCACCAAGCCTGCGGCACGGAAGGCACTTGATCGGTGTGCCGATGGCGTCTTCCTGCTTACCTCGGCACCACGTCCAATTGTTGTTGAACCATTAGAACAGTATGACGATGAGGATGGTCTGCCAGAGAAGCTTGCCCAGAAGAATCCAAATTATCAGAAagagagagagcagcctCCACGCTTTGCTCGACCGGGTACCTTTGAGTTTGAATACTCCCAGCGTTGGAAGTCCCTTGATGACATGGAGAAACAACAGAGGCAGCAAGTTGAGAAAAATATCCGCGAGGCCCGTGAAAAACTGGAGGCGGAAATGGACGATGCCTATCATGAGCATCAAGCTAATTTACTTCGCCAGGatcTTCTCAGGCGCCAGGAGGAGCTGCGACGCATGGAAGAGATGCATAGCCAGGAAATGCAGAAACGGAAAGAGATGCAGCTAAGACAAGAGGAGGAACGCCGTAGACGTGAGGAGGAACTGCTTCGGCAGAGGGAGCTGGAGGAGCAGATGAGGCGCAAGCGTGAGGAGTCCTACAGGATGGGTGGCTTCATGGATAATagggagagggagatgAGGATGAATGCTGGAAGTGGTCTTGGGATGGCAGaTATGCCTTTTGGCTCCTCCAACCAGAAGTTTCAGTTGTCTGGAATGAACTTTGACGGTCACCAGGGAATGGGTGGAGCAGGAGCAGGGGGCATGGTGCCCAATGAAATGGGGCATCGAGTGGTGGACGCAGGGTAACCGCCAAGCCTTTTGCAAATAAgATCCTCACAGCACACGTTAGTACTTTTCTTCAAACCTACTCTATAGGTTGTTGGAGAATAAATGTAATCTGAGACAGCACTCATTGAGGCTCTCAACCACACACTCCTTATGAAGAAGAAACCTAAAGGGAGAGTGACAGAATGTATTGGACAGCAGAAGGATAACCGTTGTATTTTGCAATGCTTCAAGTCACCTGTTAGATTACGatcggattttatttttttattttttttttttttggacataaACAGTTGTAGGTGAACAACTGTTCCCATTGATTTATAACGAAGGAAATTAAATTccatctgttccaatactttacAACTTATCTTTACACGTATCTGTGCTATGTTGTCCACAACAGGTTAAATTCTGGGGGTTGTGTTTCACTTTTATCACTGTTGTATCTGGAGTTGCCGTTAATTCTGGCGCCGATCCAGTGTAGAGGTCAGGAGCATGCAAGCTGATAGCGCCGAACACAAGGTTCTGTGAATGTGGGTCAATAGTCCTGTCTGACCTGCATTACACAGTGGCCAGCTAGGGTGTTTTGTAAAAGGTTTGTAAAATAAAGATTGTTTTTACCATCTGA

Function

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13219 SFPQ, PSF; splicing factor, proline- and glutamine-rich

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269992 lncRNA upstream 238974 21090756 ~ 21091031 (+) True G198848
TU269986 lncRNA upstream 269793 21060000 ~ 21060212 (+) True G198842
TU269983 lncRNA upstream 283116 21046592 ~ 21046889 (+) True G198839
TU269973 lncRNA upstream 398481 20931218 ~ 20931524 (+) True G198830
TU269962 lncRNA upstream 514434 20815141 ~ 20815571 (+) True G198820
TU270035 lncRNA downstream 47635 21398732 ~ 21399000 (+) True G198881
TU270105 lncRNA downstream 209905 21561002 ~ 21561215 (+) True G198939
TU270109 lncRNA downstream 268541 21619638 ~ 21619845 (+) True G198943
TU270113 lncRNA downstream 305319 21656416 ~ 21656764 (+) True G198947
TU270131 lncRNA downstream 454377 21805474 ~ 21805739 (+) True G198965
XM_007249420.3 mRNA upstream 1016024 20276631 ~ 20313981 (+) True lpcat1
XM_022683168.1 mRNA upstream 1055151 20274408 ~ 20274854 (+) False mrpl36
XM_007249436.3 mRNA upstream 1075225 20249200 ~ 20254780 (+) True LOC103030452
XM_007249412.3 mRNA upstream 1174535 20143895 ~ 20155470 (+) True LOC103022559
XM_007249414.3 mRNA upstream 1187100 20138562 ~ 20142905 (+) False srfbp1
XM_015605816.2 mRNA downstream 465 21351562 ~ 21356335 (+) True LOC107197622
XM_007249374.3 mRNA downstream 7367 21358464 ~ 21383000 (+) True LOC103037930
XM_007249375.3 mRNA downstream 7497 21358594 ~ 21383000 (+) False LOC103037930
XM_007249369.3 mRNA downstream 39041 21390138 ~ 21395528 (+) True otud6b
XM_022683172.1 mRNA downstream 40616 21391713 ~ 21395528 (+) False otud6b
TU269957 other upstream 527115 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 1241018 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 1251710 20053051 ~ 20078295 (+) False fndc5
TU269618 other upstream 2082609 19246972 ~ 19247396 (+) True G198540
TU269613 other upstream 2124347 19205077 ~ 19205658 (+) True G198535
XR_002651708.1 other downstream 7367 21358464 ~ 21383000 (+) False LOC103037930
TU270302 other downstream 868168 22219265 ~ 22223036 (+) True G199091
TU271111 other downstream 4266831 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 4266937 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 4266937 25618034 ~ 25620129 (+) False ndufs5

Expression Profile