RNA id: XM_007249389.3


Basic Information

Item Value
RNA id XM_007249389.3
length 4071
RNA type mRNA
GC content 0.52
exon number 24
gene id bag6
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 19047940 ~ 19067708 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAATTGTTCGCGCAGTGGTGCGGTCGATGTTGCTCGGAAACGGTGCTGGATTGGCTCTGGATTAGCTGGTTAGCTAATTTAGCTATCAGGCATCAGATGAACTGGGATTAAGAGCGAGCGTCGCAGATTTATCTCACTGAGAAAGCAAAACAAGTTCAGGGGTCCATGGAGGAGTCAGGGACTATTGAAGTAACAGTAAAAACTCTGGACTCACAGAGCAGGAGCTACACTGTCCGCGGAGAGtggACAGTAAAAGAGTTTAAGGAGCATATTGCTTCCTCAGTTGAGATTCCTGTGGATAAGCAAAGGCTGATATATCAGGGCAGGGTGCTGCAGGATGAGAGGACACTGACAGAATATAATGTTGATGGTAAGGTTATTCATCTTGTTGAGCGGGCCCCTCCTCAGACTCCTCAgtctggtggtggaggaggtgcAGTTCCTGGTTCATCAGGTGCAGCTGAGGgaggctccagctcttctcactCATCAACTTCCACCTCTCAGGGAGCTCCACACGACCGAAATGGCAACAGCTATGTCATGCTGGGCACCTTTAACCTTCCTGTCAACATTATGGACCCCCAACAGATACAGATGTCTGTGCAGCAGATGATGGCTGGTGTTGGGGAGGCTGGTCGAAATGCAAGAGTCAGCACCAGTACAGGGTTACAGAGTAATGGGTCCGTGGACGTGCATATCAACTTGGACCAGTCAGTACAGAGTGAACCAAGGATAAGGCTTCAGCTGGCAGAAAACTTGTTACGAGAGACTCAGACTTTGATTCACCAACTAGAGGGACCAGGTGAAGCATCTGCCCAGCAAGGTGCTGCAGCACCACAGCCATCCTCcacttcctcttcttcctctccttcagcACAACCAATGGAAACGTCTCCACCTCCAGCCCCTGCATCTTCATCTGCCTCCACACAAACAGAAGGGCCTCCTCACTCTGGACCCAACCATCCAAGCCCATTGGAGCTGGTGGAGGTCCTCTCGGAGGTGCGGAGGGTGGAGGAAAGACTCCGCCCCTTTATGGAGAGAACCCACTCTATCCTGGGAGCAGCTAGTTTAGCTgattacaataataatACACAAGAGCGTGAGGAAGACCAGCGCACTCTCAATTTGGTTGGAGAATCCCTCCGTCTCCTAGGCAACACCTTGATTGCTTTGAGTGATCTGCGGTGCAATTTAGCTGCTCAGCCTCCTCGCCACCTACATGTGGTCCGACCTATGTCTCACTATACATCTCCTCTTCTGCTGCAGAGTGGATTACCCCATATACCAATTCCAATGAACATTGGCACCACCGTTACAATGACCTCGAATGGCAGACAGGCAGGTGAAGGTCAGCCTCCAGCATCTCAGCCATCTGGCCAGGCTGAAGAGCAAGGCCGGGCACAGGCTCCACCCTCTCCCCCCAATGGAGCCAATCAGCAGCCTGGTCAGGGGACTCCTCGTGTGATCAGGATCACTCACCAGACTATGGAGCCTGTGGTCATGATGCAGATGAATCTGGATGATTCAGGCAATGGAGCTCAGGCCCCAGGCCAACAGAATCCCAACGCTGCTGGACAGACTGGAACCACTCCCCCCTTACACATACCAGGCCTGCCTCCTGAGTTCATGCAGGCCATTGTGCATCAGATTTCTCAGCAGGCTGCTGCAATGGCTACTGCGGCCTCAGCTGGCCACCACGGACAACAGACCAGTGCTACTGGTCCAGCTGCCCAGAATGGAGAAGccccagctgctgctgcttctgctgctgctcctccgCCTCCCCCTCCACCCCAAGCCAGGGTAGTCATCACTCGTCCCTCTTTCTCCCCACGCATTCCCCAGCCTACGGGCACCAGAGGGACAACAATCAACCTGCGGGCGACGGTGCCCCCCACAGCCGGCCAACAACCTGGACAGGGTAATCCTATGGCTCCCTCTCCTCTTACTCAGATGGTCAGTGGTCTGGTTGGACAGCTGCTAATGCCGATGCACACAGCCAACACCTCTGGCCAGACGTCTACTCACACCACCAGCACAGCTTCAATAGGTCAGTCTCAGGAAGGAGGCGCAGAGGGCAGTCTTGGCCAGTTCCTTGACTCTCTGTTGGGTGGTGCCACTGGAGTGGGAGGTGGAAATGTCTCGGGAGGTCCTCCTTCAATCACAGTGACTGTTCCTGGTGTTCCTACATTCATCCAGGGCTTGACTGACTTCATCCAGACCAATCAGCCAGTGTTCCCTACCCCAAACCCGCAACCTCCACCAGCCGCTTCTGCCCCATCTGGTCCCACACCAGCACCCCCCAACCCTCCCCAGCCCCCCAGTGCAGGAGGAGAAACTCTGAGCCCGGAGCTGTTCACAGGTATTGTTCAAGGTGTACTGTCCACCATGATGGGCTCACTGGGGGCCGGCCAGGGCAACAGTGAGAGCATCGCCCAGTTCATCCAGAGACTGTCCCAGACCAGCAACCTCTTCACACCTGGGTCTGGAGATGCAGTGGGGTTCTTTGGAGATCTGTTGTCTCTGGTCTGTCAGAGTTTCTCCATGGTGGACATGGTGTTGTTGCTGCATGGAAATCCTCAGCCTCTGAGTCGTATCCAACCTGAACTTACCGCCTTTTTCACTGAGCACTATCTCCAGGGCAGAGAGCCCACTGATGCCAACATTGCTACTGCTGCTGAAGATCTTATCAATGGACTGGAGGAGTATATCGCAGAGAGCTTTtctACAGTTACTGTTCGGGAAGGAGTAGACATCATCCAGACTAACATGTCCTTCCTCAGACAGCAGTTCACACAGATGGCCACGCACATATTCCGCTGTACAGATCACACCTTTGGTTCTCGCCTGCTGTTTCTGTGCACTCAGGGTCTGTTTGAATGTCTGGCTCTTAATCTGTACTGTTTAAGAGGAGAGCAGAGGGCTCTTACTGCAGTCATCAATCACCGCATTAGAAGAATGTCTGCAGAAGTGAATCCCAGTCTAGTGAACTGGCTAACCAGTATGATGTCCATGAGACTCCATGTAATCCTGGACCATAACCCAGTTACAGAAAACCAGATCCAGCATTATGTCATCTACACACAGATGGAAGAGGGCCTGTCTCCAGCTCCTGCCACCACTGCGGAGGAAGCCATGGCCTCTTCAGGAGAGAGTGCCGATAGCAGAGAGCCAGCTGCAGATCTCGCCCCTCCTTGCAGGCCTTCATCAGGGGAGGCGCGAGGGACTGCTGGAATGGCAGCTGCTGGGAGAGAGGAGTCTGGTGCAGAGGCAGAGCCATGGGCAGCATCTGTGCCACCTGAGTGGGTTCCTATCATAAGGCATGACATGATGTCTCAGAGGAAAATCAAGGCTCAGCCTCCACTCTCTGATGCTTACCTTCAAGGAATGCCAGCCAAAAGGAGAAAGACTGCTCAAGGTGAGGGCCcacacctttctctctctgaggcTGTGAGTCGTGCTGCCAGAACAGTAGGAGTGCGACCTGTCACTAACCCAGACAGCCTGCAAGGAGAGCTGGAGAcgccagagctgcaggaggcCTATACACAACAGGTCAAGGATGACTTGAAGAAAAGGGTTACTGAAGATCCAGACTACAACTCTCAGCGGttccccaacacacacaagGCTTTCTCAGAGAACTCATAACATCTAAATTGAATTTTGCACATCATTATACATTCAAATGTATTAGTGACTCTACATGTAGTGAGTGAGAAACTCGGACAGACATCATCACACAATCAATAGAGGAGCTGGATTCTTCTGTGAAGGGGATTCATCATTGTACTCTTCATTTGGTGTGCAATAGCCATTGATGCCCATTTGTTGTGAACAGTATCTTAGCTCTTCAGATCAGTACACCACATCTTTGGGACCAGATGTCTCACATCAACTTTCAGTCTTTATGAACTTATGTATATCTCTAAGGCTTCCTTTGTAATGTCTGTTGTAAATTAGTTGTATATTGTTgtaatgatttgtttttaatagTGGCAATAATAGCAAGTACTATACACGGTTACTATCATGCATACTTGAAATATAAATGTGCTTGATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269374 lncRNA upstream 184574 18858532 ~ 18863366 (+) False G198397
TU269372 lncRNA upstream 184718 18858532 ~ 18863222 (+) False G198397
TU269377 lncRNA upstream 184718 18858532 ~ 18863222 (+) False G198397
TU269380 lncRNA upstream 184718 18858532 ~ 18863222 (+) False G198397
TU269385 lncRNA upstream 184718 18858532 ~ 18863222 (+) True G198397
TU269513 lncRNA downstream 5363 19072800 ~ 19073616 (+) True G198468
TU269615 lncRNA downstream 144558 19211995 ~ 19212328 (+) True G198537
TU269665 lncRNA downstream 403922 19471359 ~ 19471750 (+) True G198584
TU269669 lncRNA downstream 419503 19486940 ~ 19490316 (+) True G198588
TU269670 lncRNA downstream 419503 19486940 ~ 19490316 (+) False G198588
XM_007249383.3 mRNA upstream 36473 18999374 ~ 19011467 (+) True tmem64
XM_007249380.3 mRNA upstream 123619 18906586 ~ 18924321 (+) True pip4p2
XM_007249381.3 mRNA upstream 123619 18906590 ~ 18924321 (+) False pip4p2
XM_007249433.1 mRNA upstream 196655 18850527 ~ 18851285 (+) True LOC103029482
XM_007249378.3 mRNA upstream 920419 18103816 ~ 18127521 (+) True smap2
XM_022683152.1 mRNA downstream 11648 19079085 ~ 19100818 (+) True abcf1
XM_022683153.1 mRNA downstream 11648 19079085 ~ 19100818 (+) False abcf1
XM_022683155.1 mRNA downstream 36970 19104407 ~ 19116302 (+) True ppp1r10
XM_007249395.3 mRNA downstream 36970 19104407 ~ 19116301 (+) False ppp1r10
XM_022683156.1 mRNA downstream 37362 19104799 ~ 19116302 (+) False ppp1r10
TU269406 other upstream 156326 18887469 ~ 18891614 (+) True G198400
TU269387 other upstream 184718 18858532 ~ 18863222 (+) False G198397
XR_002651704.1 other downstream 37364 19104801 ~ 19116301 (+) False ppp1r10
XR_454774.3 other downstream 98910 19166347 ~ 19182478 (+) False LOC103045134
TU269613 other downstream 137640 19205077 ~ 19205658 (+) True G198535
TU269618 other downstream 179535 19246972 ~ 19247396 (+) True G198540
XR_454777.3 other downstream 985614 20053051 ~ 20078295 (+) False fndc5

Expression Profile