RNA id: XM_007249412.3


Basic Information

Item Value
RNA id XM_007249412.3
length 3433
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC103022559
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 20143895 ~ 20155470 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACCGCATCCCCTTCATTCATTGTCCGCTTCCTGGAGCCATTTTTGAGCGCCTACGAAGAAGTTCGCTTCTTCATATTTAATCGTTTCCATCTGCTGCTTTTGCGCGCCGATATTACAACGTCTTGGCGATCACAGGTCCGCGAGGGTCTCCTCTCTCGGCATTGGGGTCTATTTTTGGTGTTTGGTTGTTGAATTTGCAGAAAAAGGTTCATAAACAAAAGCGACCGCGCAGGAGAGTTGGAGTGTGTTGAAGATGAAGAAGGAGCTGTCCTCGGCCCCACACAGGGCGATGATATCGGGACTTGGCGGCTCTACACTGGAGCAGAACGGCGGGCTGTACAGCGCTTCAGATCGCCGTGGTGTATCGTATTCTTCAGGCACTTACATTCAGATGATCACCTCGCCGTCGTACGCTGCACAGTCCGCTGAAGTCCGGGTGTCGGAGTCCTCCGCGGGCAGCTTGTACACAACCCCACTCCAGGGGCCTTCAGTCGGGGCAGAGCTCCGAGCCGCCGCCGGGCGTTCTCTGGTTAAGCGGCGTTTAGAGCTGGACACTGTGGAGCACCAATACAGTGAACCAGCTAGGATGCCCAGGGGTCGCAGAGTAGCTATTCGAATGAAGAGTCCCAAAGCTCCTAAAACTCCTCCAGAGAAGACACGCTATGATACGTCCTTGGGTCTCCTGACAAAGAAGTTCTGTCAGCTGTTGGCTCGGTCTTCAGACGGAGTGCTGGACCTGAACCGGGCTGCTGACTTGCTCAACGTCCAGAAGAGGCGACTGTACGATATCACCAATGTGCTGGAAGGTGTGCATCTCATCAAAAAGAAGTCAAAGAACAACATCCAGTGGCTgggATCAACCCTGCCATCTGATGCAGGGCAGCTCACTATGCCCCCATTGCAGACTTTGAGCAGAGAGATGATTGCCCTCAGAGATGAAGAGAGACGACTAGACGAGCTCATTCAGGCCTGCTCTAACAATGTCCAGCAGATGACTGAGGAGACGCACAACCAAAAATATGCTTATGTCACGTATCAAGACATCCGAAGAATCAAAAGTTTGCAGGATCAGACTGTAATTGCTGTTAAAGCTCCATCAGAAACCAAGCTGGAGGTGCCTGACCCAAAGGAGaGTTTGCAGGTCCATTTGAGCAGCTCGAAAGGCCCCATTGATGTGTTCCTCTGCACAGACCCCAGTGGTCCTGGCAGTGCGCTGGACAATGGCGTGGATGTAAATGGAAATGACACAGCCTTCCTCAGAGTATCCAAAGAAGGTGCAAACTCTGATGTGATGGATTCTGCCCAGGTAACCAGCACCTGCACTAGTGCTCCAGTTAATGGGAATTCTGCACAGACTGGAAACATGTCTCCACTTAGCTCATCACTGTCCTCCATCCTCCAGCAGCCCATGGAGATGGTACCTTTTGTATCTCTTTCACCTGCTTTACTCAGTGAGGACTACATGCTGGGTCTGGATGATGAGCAGGGCATAAGTGATCTTTTTGACTCGTGTGACTTGGATATGCTGCCTCTGGATGACCTGCTGATGGTATGAGCTCTGCTGGAGTTGGCAGGTGAATATGGAGGGTAGGAACTGTTCACAGATGGAATTTACCAATGAGTGTCTTCAGTGGAAATGGACTTGTGTGGGGTTTTCTGCCCATTTTGGATGGCCTATTACCTGTTTGTGTGATGTGACTCCACgcatcctttttttctttttatgaattCCCTTACAAAGATCAAGAATCTTAAATCTAAGATGCATGGAATTGTTAATGGTCTTAATCTGTGAAGTTAAAGCCCCCAAAACGTCACAAAAAGAccttatttatttgactttttttctttcacagtGATCATTGTCAATATTGTAAGGCTGGTGAATTTGCACAAATTCACATGGCTGTTTGTATGTTTACAAGTTAACCATTCAAGTTTATAGTTGGTTATTTACCACATGACCATGTCTGGCTGGTGGTTGCATTTATGGAAAATTGTTTAGCAATATAACTTGCGTACTAACAGTACCTAATCCAGAAACACTACCATCTGGCTTAGCAGAACTGTAAAAGTTACTTTAGAAAATACATTGTGGGTGTATTCTTGTAATACTAAAATGTAATGTGCTTGAAAGTTCACAGCAGAGGATTGTACAAATGAATTTATATACTGTGCTTTAGCTGCATTACTCACTTTCTCAGGGTAATCACCAGTGCTCCCTTTTTCACACAAGCAGTGtgctaattttatattaaataatgctattTAAGAGCCCTTAGTCATTATAAAGCTTTAGGACTATTGCATAATGTTCCAAATATAAATTTCCCAACATGAAATTGTCATGTGTATATAGATTATGTACTGTCTCATGCAACATTTGAAATCCATTTTGAAAAGCATTATGCTAAGTTAAAGTAATGGGGAGGGTAATGCggtgtttttgttttgaaatGCTTAAACCTTGACTAATACTCTACACTCAAacatgcttaacaaacatgtaAATGACTTGAACAAGTTTGGCTGTTAGACTAAAGTGTATGGTGCTACTTATTGGCAGCTTATATggttatatactgtacttttaccCTGGTCTTGGTGAGGGGCTTGGGAGAGTTTTGATTAGTGTGGTGGCATTTcttgttggtgtgtttttttttttttttttttttttttttccccaattaaTTGTGCTGAATTTTGTAAACCTAACTCTCTCTGACTGGATTTCTCATTTTGGAGAGCTAACGTGGACTGTTTGTTGTCTTCCATGGgctgtgattaataaacaaaatgaatgaacgaatgaatgaataaataaatgttctaaattaaaTGAGGTCTGCTGAAGCAGATCAGCCACTATACCAGCCTGAACTTGTATCAAGGACCACTGGTTGAACGGTACTGTTGGACTGCCTTTTAAGGTAACGAATGTAGCTTCGACTAGCTCGGTGTACTAATTAAATGGACTTGgtgctattgtttttttttttttttttattgttttgttttgtttttttccctcttcccTTTACACTCCAATGAAggaaatttgtatttttttttttttcttcaatattAGCCAAAGCTTGTTCCACAGCATTTTTCCACTGCATAATTTCCAGTAACATTGGAAATGCCTTGTATGCTACTTTGTCCTTCCTTGACCTTTTGTTTGGTTTTCTGTGATGTGTTCGAGTTTGCATGTGCCAGTGGGAAGCCAGCAGAGTTTTCAGTAAGCTTTTACAAATTGAGGACAAATGCAGATAAATCAGgtttgggccaaaattccctTATTGGACTCCCCATCTCAATATCTTGCTTCAGTGTGCAAGCAGGCCTGTTTTTGTGAAGCTGTTTTGTATTTGGTGTGGTCTGTACATAGTGTTGcaaactgtttttaataaagttttgaaTGCTTTG

Function

GO: NA

KEGG:

id description
K06620 E2F3; transcription factor E2F3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269778 lncRNA upstream 161645 19981683 ~ 19982250 (+) True G198664
TU269765 lncRNA upstream 167838 19975753 ~ 19976057 (+) True G198661
TU269762 lncRNA upstream 187309 19956342 ~ 19956586 (+) True G198658
TU269744 lncRNA upstream 329973 19813701 ~ 19813922 (+) True G198640
TU269742 lncRNA upstream 332401 19810992 ~ 19811494 (+) True G198638
XR_002651705.1 lncRNA downstream 16486 20171956 ~ 20172807 (+) True LOC111195527
TU269849 lncRNA downstream 66576 20222046 ~ 20222287 (+) True G198727
TU269852 lncRNA downstream 113219 20268689 ~ 20271980 (+) True G198730
TU269856 lncRNA downstream 117551 20273021 ~ 20274831 (+) True mrpl36
TU269886 lncRNA downstream 188449 20343919 ~ 20344324 (+) True G198754
XM_022683163.1 mRNA upstream 990 20137795 ~ 20142905 (+) True srfbp1
XM_022683165.1 mRNA upstream 990 20137797 ~ 20142905 (+) False srfbp1
XM_022683166.1 mRNA upstream 990 20137915 ~ 20142905 (+) False srfbp1
XM_007249414.3 mRNA upstream 990 20138562 ~ 20142905 (+) False srfbp1
XM_022683162.1 mRNA upstream 990 20138584 ~ 20142905 (+) False srfbp1
XM_007249436.3 mRNA downstream 93730 20249200 ~ 20254780 (+) True LOC103030452
XM_022683168.1 mRNA downstream 118938 20274408 ~ 20274854 (+) False mrpl36
XM_007249420.3 mRNA downstream 121161 20276631 ~ 20313981 (+) True lpcat1
XM_015605818.2 mRNA downstream 1174535 21330005 ~ 21351097 (+) True LOC103038471
XM_015605819.2 mRNA downstream 1174535 21330005 ~ 21351097 (+) False LOC103038471
TU269770 other upstream 54908 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 65600 20053051 ~ 20078295 (+) False fndc5
TU269618 other upstream 896499 19246972 ~ 19247396 (+) True G198540
TU269613 other upstream 938237 19205077 ~ 19205658 (+) True G198535
XR_454774.3 other upstream 961417 19166347 ~ 19182478 (+) False LOC103045134
TU269957 other downstream 646901 20802371 ~ 20802890 (+) True G198815
XR_002651708.1 other downstream 1202994 21358464 ~ 21383000 (+) False LOC103037930
TU270302 other downstream 2063795 22219265 ~ 22223036 (+) True G199091
TU271111 other downstream 5462458 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 5462564 25618034 ~ 25620129 (+) False ndufs5

Expression Profile