RNA id: XM_022683163.1


Basic Information

Item Value
RNA id XM_022683163.1
length 3170
RNA type mRNA
GC content 0.43
exon number 3
gene id srfbp1
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 20137795 ~ 20142905 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCGCTCGcttctttccattttttttacgtacgctaaaaaaaagtaagatgGCGGCGCCCTGGGCGAGAAGTTTCCACGCATAAGAGAGTGAGTTTCGTGGTCTAAAGAAGTCTACAGAACAACCAGAGAAAGATGCCTGCAGCACTAAACCTCAGCAATGAGGTGGTGAAGATGAGGGCTGAAGTGAAGAAGGTGAAGGTGTTCGTCATCCGCAAACTCACCCGAACCATTGAAGtactgaagaaaaagaaaggaaatgaGGCTGTCTTGGAGAAACACAAGAGGCGAGTAGCGAGGCTGCATGAGGAGATCAGAGAGTTAAGGACACTGGCTCCCGACGTCATCACCAAGACTGCTCTACAGAAGGACATCGACTTTAAGAACGTGTGTCAGAATAATAACGCCAGCCTGTCAGAGCGTGCCATAGCACGCATTGCCTCACACCCAGACTTCAGCAATAAAATCCTTAAGCTCAAAAAGGCCATTGAAGCCTTCGAAGCAGAACGGAAAAGCGATGCTAAGActgacaaaaagacaaaaaaagaaactaaagccATCGAGCaacagagtgaggcagaaccGGGGACAGGGGACATGGAAGAGGCTGGCCAAATGGAAGACGCAGCAAAGCAGGATGAGGATGCTCCAATCACAGAAACAGAGAAATCATTAGAGACAGATAGCACATCAGCTGAGGTGATGAAGATGAGAAAAGCGGTAAAGAAACTGAGGATGCTAGTTATCCGGAAGCTCTCCCAAGACATTTCCAGTCTGAAGAAGATGAAAGGTGAAGAGTCTGATCTCAAAGAGTACAGAGACAGTGCAGCAAAGCTTCAAAGTGAAGTCCAGGTTTTGAGGGATCTTGTACCTGACCATGTTACCACAAGAGCCCTTCAGGGGAACATTAATATGGAAGAGGTGCTGCAGAACCCAGAGTCCAGTCCATTGGATAAAGCCACTGCACGTATCGCCACGCACCCACGCTTCATCGAGAAACTCCAGACTGTTCGGGAATCGATTGAACAGGAAAAGATGAAGGCTGCACTGATAGAAGAGGAGAATATGGTCAGAGAGGTGACTGTGGCTGAATATGGGGACAGTGATGATGAAGGGGATGAATCGGATTTGGAATCAGATGATGATGACGACGACGACGACGACgacgacgatgatgatgatgatgatgatgatgatgatgaggaggaggaggaggaggaagacaacgaagatgaagaagaggaggaggaggaggagggagaggatAAAGATGATATCAAAGGAGATGGTGAGAAAGCAAAAACGATTGAACAACCTGTAAAGGTGATTAAAGTATCTAATGTTGTAAAGCCACCAGTGGAGGCCAAGGCAGCTACTGTGGCTTCAGTATTAAAACCAAAAGAATCTGCAACTAACGAAGCTGTGAAAACAGCAGTGGTCACTCCTAGTGTTCCAGCAAAGAGCAAGAACTCAGCCACACCAGCCGGACAGTCCATCCAACCTAAAGccaaaaagacagaaaataaagaagataAAGAGGAAGAAAGTGACTTGGAGCTGTCTGATGATGAGCAGGAGAAGGAGTATTTTGACGACAGCACTGAAGAACGTTTCCACAAGCAGTCTTCTCTCTCTGAGGAGAGCGATGAAGATGACTTCTTCCTAGGCAAAGTAAGCaaactgaagaaaaagaaaagtgcatcATCTAGAGCCGAGAAAAAGAGTGAACCTAAAACAAGTGAAGTACAGACTGCTAAGGAGTCCAGCGACAAAACTCGGGAGTTCAAAATGCAGTCAGTCTTCTGCTCCGCCCTGTCTGAGTCTGGGGGATCCTCTCAGAAAGGGCAGCATCGTGGCTCAAAGCCACCACACTTCCAGAACCAGAAGAAACGTCCTGATGGAGATGTAAAACCATCCTGGTTCAAAAGCCAAGGCTCTGGAGCTGACAGGAGGCCTTCAGCAGCTGTATCTAAAGGTCCAGGTCCTAGGCAGATGGGTGCTGGAGGGACCAGGATGGGCAAACCTGAGTTTGAACGGCAGCAAAACCAGACTAATAGAGGTGCACATGGCAAGCCTTTCAGACCTCCTCAGCATTCCCAGCAGGCCATGCACCCCTCATGGGAGGCCAGTCGGAAAAGGAAGGAGCAGCAGTCTCAGATTACAGCTTTCCAAGGGAAAAAGATTAAAtttgatgacgatgatgattaAAATCTCTTCACATTTGCCACCAACACCCACTTCAAGGTCCTCTGAagttttgactgtttttttctttaccaagACATTTCTTTCTGATAAATTTATTCTGTTTAGACAATAGACAATTTTCCACTACATGGTACTAACTCTACCCATACCTAATGCTCTCTTCTTGCTAcctgaaaagtttttttttttccactacaTTTGCCCTGAAATGTAGTTGTTTATGTTGCAAAACACCAGACACTGCCATCAGAGTGACAACACAGTTACAATAAAGTAGAGTGACAATTATCTTGGGTCATTTAGTGCTCTACATGGaaccaagagtgtgcaggtTCTCAGAAAAGTACCCAGTTCCAGGTATGTATTccaggaaaaaacaaaactgagtAGCTAAGTAGAGTAGAGTTGAGTGGAGCAGGTAGCATGCAGTGGAAAAGTGACAATAATTTACAGCAGATTTTGCCAGatattttctataaatattttatttgccaTGAATTAGTCAGGTATTAGACCTAGTATTGGGTACACAGTAATCCGAATAGATTTTGGATGATAAAAGGAAAATGTAACAGAGGATAGGTCAAATCCTTGTCTAGCAAACTGAACAAAAactcacttaaaaataatggtgTTCCAAAAGGTTATTTAAACAGTACTAAAAATGAATGGCTtttgatttataaaagaaatacagagtgtaatgaaaaaaaattcaactgcaaCCAAAAGTGTAGAATGTGATTTTCCagtaacacatttaaacataggggatgtttaaatgtgttactGGAAAATCACATTCTACATTGTTccgttttatatattttgactGCATAAAATGTTTTGCCTCTTTTTCCATAAAGTCTGTGAAGTCTGTTCAGCTGTTTGTgtacatgcaaaaaaatgtgtttaatgtgtttaaagggCAAAGATTAAAAACGTTTCCAGTTGTTtgacttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269778 lncRNA upstream 155545 19981683 ~ 19982250 (+) True G198664
TU269765 lncRNA upstream 161738 19975753 ~ 19976057 (+) True G198661
TU269762 lncRNA upstream 181209 19956342 ~ 19956586 (+) True G198658
TU269744 lncRNA upstream 323873 19813701 ~ 19813922 (+) True G198640
TU269742 lncRNA upstream 326301 19810992 ~ 19811494 (+) True G198638
XR_002651705.1 lncRNA downstream 29051 20171956 ~ 20172807 (+) True LOC111195527
TU269849 lncRNA downstream 79141 20222046 ~ 20222287 (+) True G198727
TU269852 lncRNA downstream 125784 20268689 ~ 20271980 (+) True G198730
TU269856 lncRNA downstream 130116 20273021 ~ 20274831 (+) True mrpl36
TU269886 lncRNA downstream 201014 20343919 ~ 20344324 (+) True G198754
XM_015605834.2 mRNA upstream 59500 20053028 ~ 20078295 (+) False fndc5
XM_007249409.3 mRNA upstream 60595 20053051 ~ 20077200 (+) False fndc5
XM_007249401.2 mRNA upstream 456649 19675126 ~ 19681146 (+) True eif3i
XM_007249402.3 mRNA upstream 466579 19660446 ~ 19671216 (+) True txlna
XM_007249403.3 mRNA upstream 478502 19639667 ~ 19659293 (+) True kpna6
XM_007249412.3 mRNA downstream 990 20143895 ~ 20155470 (+) True LOC103022559
XM_007249436.3 mRNA downstream 106295 20249200 ~ 20254780 (+) True LOC103030452
XM_022683168.1 mRNA downstream 131503 20274408 ~ 20274854 (+) False mrpl36
XM_007249420.3 mRNA downstream 133726 20276631 ~ 20313981 (+) True lpcat1
XM_015605818.2 mRNA downstream 1187100 21330005 ~ 21351097 (+) True LOC103038471
TU269770 other upstream 48808 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 59500 20053051 ~ 20078295 (+) False fndc5
TU269618 other upstream 890399 19246972 ~ 19247396 (+) True G198540
TU269613 other upstream 932137 19205077 ~ 19205658 (+) True G198535
XR_454774.3 other upstream 955317 19166347 ~ 19182478 (+) False LOC103045134
TU269957 other downstream 659466 20802371 ~ 20802890 (+) True G198815
XR_002651708.1 other downstream 1215559 21358464 ~ 21383000 (+) False LOC103037930
TU270302 other downstream 2076360 22219265 ~ 22223036 (+) True G199091
TU271111 other downstream 5475023 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 5475129 25618034 ~ 25620129 (+) False ndufs5

Expression Profile