RNA id: XM_015607239.2


Basic Information

Item Value
RNA id XM_015607239.2
length 1759
RNA type mRNA
GC content 0.50
exon number 9
gene id seh1l
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 11852011 ~ 11862695 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agaGTCTAGATTGTGGAGTTCAGACCGAGGCGCTGTCGGGCTGCTGTTGCTCCTCCAGTCCTACTGCTCTGAGAGCGGCGCTGCTGAGTCTCTGACTGGCAGGAAACAGCAGTGAGCGGTAAAATGGCGCATTGCTGAGCGACCCGCCAGAAGTGAgcagaaacattaaaaagtttaaagcGGTGTTCTGTATTTACTCTGTTTCTGAGAGCGAACAGGGATTCAGTGTTTTCACAGCGATCAGGAACGGAGAGTAGAGGAGCATGTTTGTGGCGCGAAGCATCGCTGCAGATCACAAAGATCTGATCCACGATGTTTCCTATGATTTCCACGGCAGGAGGATGGCGACCTGCTCCAGCGACCAGAGCGTGAAGGTTTGGGACAAAAGTGACGATGGAGAATGGCATTGCACAGCCAGTTGGAAGACCCACAGTGGCTCAGTGTGGAGAGTGACGTGGGCTCACCCAGAGTTCGGACAGGTGCTGGCGTCCTGCTCTTTTGACCGCACCGCAGCAGTGTGGGAAGAAATAGTCGGCGAATCCAACGACAAACAGCGAGGACTTAGTCACTGGATCAAGAGAACAACTTTGGTGGACAGCAGGACTTCAGTAACAGATGTGAAGTTTGCACCAAAGCACATGGGCCTGGTGCTGGCCACTTGCTCTGCAGATGGAGTGGTGCGCATTTATGAAGCTCCAGACGTGATGAACCTTAGTCAGTGGAGTCTGCAGCACGAGATATCCTGCAAGCTCTCCTGCTCCTGCATCTCCTGGAACCCCTccagCTCCCGTGCTCATCCTCCTATGATCGCTGTGGGTAGTGATGACAACAATGTGACCTACAGTGGAAAAGTACAGATCTATGAATACAATGAAAATACCAGGAAGTACACCAAAGCAGAGACGTTAATGACCGTTACAGATCCTGTTCATGACATTGCTTTCGCTCCTAATCTCGGGAGGTCTTTCCATGTGCTTGCCATAGCAACCAAAGATGTCCGCATTTTCAAGCTTATACCTCTCCGGAGAGAAAGTACCACAAGCTCTGGACCAACTAAGTTTGAGGTGCAGGTGATGGCTCAGTTCGACAGCCATAACTCTCAGGTGTGGCGCGTCAGCTGGAACATTACCAGTACCCTACTGGCCTCCTCCGGGGATGATGGCTGTGTTCGCCTATGGAAGGCTAATTACATGGACAACTGGAAGTGTACAGGGATCCTGCGGGGTGATGGCAGCCCAGTGAATGGCTCCTCAGTTCAGGGTGCGGCTCTCGGTGCTGTGGGGTCTGGTGGAGCACAGACACAGAATAGTGTGGTGGGAGCAGCTTCTGCCGGCAGatatttTTTCCCACATCTGGATCCCCCTCGAGCTGGATCCAGACTGGCCCTCCTACTGCCCCCTCCCTCACTGATTGAGCAGATCTTTGAAACTGatcacacacaccaacaccaaccaccacagatacgcCACCGATACACACCCACTCAACCCATACAGCCTGCAGAGCAcgactgaccacacacacacacactctttatcctcaagtcattttttgttttcttaaatcAGCATTTTGCTGAATTTCTCTCCTAATTGAAAATTTCCTTCTGCCATAAATGTCATGGATTTTGGAATATCAGGTAAAATCAGACATAAATGTTACAGTTCTGGAATGATAAAGGCATTTTTTGTACTAGATTTTATGTAACAAAGTAAAGTTTCAGTTCCTctgtattaataaaaacactgctggaagtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267339 lncRNA upstream 1270 11823203 ~ 11850741 (+) True G196974
TU267325 lncRNA upstream 100296 11750741 ~ 11751715 (+) True G196964
TU267326 lncRNA upstream 101508 11749118 ~ 11750503 (+) True G196965
TU267319 lncRNA upstream 105776 11687399 ~ 11746235 (+) False grhl2
TU267307 lncRNA upstream 150330 11699598 ~ 11701681 (+) True G196955
TU267348 lncRNA downstream 11267 11873962 ~ 11929251 (+) True G196981
XR_002651687.1 lncRNA downstream 65141 11927836 ~ 11929113 (+) True LOC111195509
TU267353 lncRNA downstream 76684 11939379 ~ 11959950 (+) True G196984
TU267355 lncRNA downstream 130487 11993182 ~ 11994321 (+) True G196986
TU267511 lncRNA downstream 759314 12622009 ~ 12624605 (+) True G197090
XM_007254674.3 mRNA upstream 30167 11813225 ~ 11821844 (+) True psmg2
XM_007254671.3 mRNA upstream 106373 11714815 ~ 11745638 (+) True grhl2
XM_022683054.1 mRNA upstream 106373 11715203 ~ 11745638 (+) False grhl2
XM_022683055.1 mRNA upstream 106373 11715305 ~ 11745638 (+) False grhl2
XM_022683423.1 mRNA upstream 169538 11678931 ~ 11682473 (+) True LOC111195553
XM_022683057.1 mRNA downstream 11246 11873941 ~ 11991483 (+) True ldlrad4
XM_022683058.1 mRNA downstream 24453 11887148 ~ 11991483 (+) False ldlrad4
XM_007254679.3 mRNA downstream 85592 11948287 ~ 11991483 (+) False ldlrad4
XM_007254677.3 mRNA downstream 142131 12004826 ~ 12019861 (+) True rnmt
XM_007254697.3 mRNA downstream 672736 12535431 ~ 12615182 (+) True LOC103026238
TU267213 other upstream 434423 11402194 ~ 11417588 (+) False mrpl24
TU267214 other upstream 434423 11402194 ~ 11417588 (+) False mrpl24
TU266794 other upstream 1359910 10491546 ~ 10492101 (+) True G196633
trnap-agg_20 other upstream 1624208 10227734 ~ 10227803 (+) True trnap-agg_20
trnap-agg_19 other upstream 1624517 10227422 ~ 10227494 (+) True trnap-agg_19
TU267531 other downstream 852673 12715368 ~ 12774496 (+) True G197106
TU267630 other downstream 1026663 12889358 ~ 12928524 (+) True LOC103029421
TU267673 other downstream 1094165 12956860 ~ 12964344 (+) False s100a14
TU267853 other downstream 1461691 13324386 ~ 13362658 (+) True G197334
TU268310 other downstream 2603724 14466419 ~ 14468882 (+) False tac1

Expression Profile