RNA id: XM_007254733.3


Basic Information

Item Value
RNA id XM_007254733.3
length 3564
RNA type mRNA
GC content 0.38
exon number 3
gene id LOC103036495
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13454703 ~ 13463236 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaattgtatgttttattagGATTGTGTGTCATTGTTCTACATACACGTGGAGTCACTCTTTTCATGGGAAGCACATTGTGTTAGCTGACACGGTGTGAATTACTAGAGGACGTGTCTGAGGAATGATTTATGACATAAGAGGAACGTGGGGAGGGCGTTCCCGTGACCAAGTTCAAGGTAGAAGCTTCTTTCGGTTTGTGCTCGGAGTATATAGTCTGTCTCAGACGCCTGTAGAAACAGTTATTTACAGATTGGGACGAGCcgatactgtgtgtgtttttttttttattttatcatggaAGAAGGCATTCCTTTCCATTTACCTGTAAAAGCTAGTTTGTTTTCACTACttggttcattttttttctgtctggaTGTGGCTTTGGACGTGTGGACAATTGTGTCGCTGTATAAGGAGCAGGAGTATGTCTACATGGGATTGCTAatagctctgctgctgctctcctCAATCCTAGTCCAGGTCTTCAGCTGGATCTGGTACAAAGAGAAGAACATGGAAACCAGCACAGACAAATTTGCAGAAAAATACAATTTGATAGGACCGCTGCACTTCTTGCAGTTGGGAGTGTTTCTCAGGTGTGCCAGTTTGGTGGAACTCTCCATCCGCAAAGTTTTAAAATTTGATATTTTCCAAGAAGCAGTAGCTGTGCATCTGAAGCATGACCTCAGTATGCTGCGTCTGTTTGAGACGTTCTCTGAAAGCATCCCGCAGATCGTTCTCATGATCACCATCATCATGCAGGAGCAGGAGCTGCAGCTTTTTACAGgtttcaaAGTTGCTGTTTCATTCCTTATGCTTGCCCTTACTGTGATGTCGTACCATCGACACATGCGTGAGTTTGTTCCTGAGGACAAGAAAATGAACTGGCTCTCGTCTGGGGCTTTCTTCCTGTGGAACCTGTTCCTGATTACCCCGCGGGTGGTTGCTGTGGCCCTCTTTGCCTCCGTCCTGCCTTGCTTCATCGCCGTTCACTTCCTGTGTCTGTGGTTGCTGCTGGTTCTTTGTGTCTGGAGACAGAAGACGGACTTCATGGAAAATGCTGCAGGTGAATGGCTCTACCGGGCCACTGTAGGACTTATCTGGTACTTCAGCTGGTTTAATGTATCAGGCAAGAACACCAGAATCAAGAGGATCCTTTACCATGTGTTAATGGGGGCCGACACGGCTCTTCTATTGGTGTTGTGGTTTTGGAGAACATCCGTGGAATCAGCTTGTAGGAATCCTCTACCCATTAATCCCTACGTACTGCTCGTGGCACTGCCTGTGCTTTACATTATCGGCCTCCTGCTGAACCTGCTTTACTACTGGAAATTCCATCCCAAGAGAGAAAAAACGCCACGGTTAAGGTCAGCTTCTGTGGGGCTGCTGGACACAGATTCGGCTGCAGAAACTCCACAGACTGGTGTCCATAAGAGGATGAAAAACATGGATAATAATTTTTGGTAATATTTTTATGGTTTTCTAGACCCAAATAAAACAAGTCTTGATAggatttttattgttaaatcaGCCCAATTGTTACACAGCCTAATGCATATATGACTATATGCAGGCTAGACTCTTATCAGTTTCTCCTTTTTTTACAAACTACATGCAAGTTCTGGATGCAATGGGTTCCTTATAGTAGTATTTTATTTGTGAggtgttgatgttttttttttatcactttatgtatttattagatGTTTGTGTCATACTTGCTCATTTTATGCTGCTTATCTATATTTAAATTAGCGATATGCCACTATGAGACCTGAGAGAGTGGatcatacagtattttttttttttaaacgtagAGTATATTACAGTAACTGATAggtggaaacaataaaaaaaagttcatttattatctttattgtAATTTCACAAATGTTTCATATCACTATTCATACAGTAGGCTGCCCTAGCTACAGTGGATTTAGCTGTTAgctacagtaatatttcaggagaTGGGGATTGATAGTATGCTTTGATTCATACTATACTATCAATTGTCAAACCCATCCCTGCACCCTTGCAAATAAGTACTGGTATGTCTGTGTGCTTTTACAGTGCAGGTGTTGCATTTCCTTGTCAGGATTTTCTATAATTTGTAACTTATTTACATATAGCCATTGCTTATCCACCAGTCCTAGCTTAgcctttctttgtttttagctGTTAGCTGTGGCTCCTTCCTAGCCTCAGTTTAAGCTTTTAGCTTTTGCTGTTTTACATTTGAAATATTCTTTAGTCTTGATTTTTGTTGAATTCTTTTTGAAGAGGTTTACCTCGTCAGACATTGTCTCAAATACTACACTAGTGTAGCATTCTTAGCAGTATTTATTTCATAAGTGTGTATTTTGTATAGCTGTAAAAGCCACAtttataattttgtattttgtgctgTTTACAGGTTTAATTACTTGCTACACaataatcataatttattattacaggGAACATTTcaggttaaaataaaataaaataaatttataatgAACCTCGCCTCACCTCAATACACACCTTCTCAGGTATTGGTTTCAAACATCATTCAGTTCTGAAGATCAGTATGATGCTCATTAATctgcacatttaaatatttataaaatatcatTACAAGTTcctagtttaaatgttttactctTATACTACTATTGATACTGtggtgtgaaatgtttttttcctctggAGGAAAATGGAAAGTGCAATAACATCAGCAGGACCTGCAAATGTGCACTCAAAGGATTACATGAAGAGTTCACAGATAAAGAGcttaaatgtacattttctaCAGGAGAACATCTCAGTGGACATATGCATTTAtcttattaatgtgtttttaattatgttcatttgtattttgtatttagttaAATAAGCTATGaacccatttaaacatactttatgtattaaaaaaaaaaagtttgactaTTGATATTCatcatttctatttttattaaggAAAGGGTTTCTCACATTTTCTTTGAATTTCATTGCAGATGTTACAGGTCATCAAAAAATCTTATTCTTTTGTTTATTCTGTTGTTAAAAATCACTGCATAAAATCGGTTGATCgcagttttgtggtatatcaccatattattattaaaattaataaaataaaatgaacttaTTAACACAAATGTGATCACATTTTGTGAGTTCATTTCCCACTTCTAGTACATTAACACTGTCTTGGGTGGATCTTCTAACTTCCCCAAACTGAATATCAGTGGTTGGGGTCAGAGTGGGACTGGGAAAACTATGCACCATTGCAGGGTCATCCACTTGACTGGTGCAGTAGGTTTCGGTGTAGAACACGTGACTTTGACTCATcattttgaggtgttatcttgtataCGGGGGTTTTCAGACTCTCTTCTCCTTATTACTTTTAGATTTCTTTTTTCCACGTGCACGGGATCTATTTTCAGATGCAATGCAGTAAGCCTCAGCCAATCTCTATCTCCATTTCTCAGCATAACTTATTGGGGTCTGAGCCTCTTCATCTACCTCCAGAATAAAAGGACGTAAACTCTGAGACATAgacggtatata

Function

GO: NA

KEGG:

id description
ko04978 Mineral absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267842 lncRNA upstream 16199 13378047 ~ 13438504 (+) True G197331
TU267843 lncRNA upstream 72330 13378047 ~ 13382373 (+) False G197331
TU267846 lncRNA upstream 72330 13378047 ~ 13382373 (+) False G197331
TU267852 lncRNA upstream 125994 13324386 ~ 13328709 (+) False G197334
TU267827 lncRNA upstream 170186 13281682 ~ 13284517 (+) True G197325
TU267963 lncRNA downstream 103132 13566368 ~ 13567811 (+) True G197406
TU267967 lncRNA downstream 122997 13586233 ~ 13605958 (+) True G197410
TU267969 lncRNA downstream 125769 13589005 ~ 13593041 (+) True G197411
XR_002651690.1 lncRNA downstream 190448 13653684 ~ 13658560 (+) False LOC103039008
TU268008 lncRNA downstream 190452 13653688 ~ 13658112 (+) False LOC103039008
XM_007254732.3 mRNA upstream 7480 13439492 ~ 13447223 (+) True LOC103036187
XM_022683075.1 mRNA upstream 135012 13301895 ~ 13319691 (+) True LOC103042102
XM_007254725.3 mRNA upstream 155824 13289714 ~ 13298879 (+) True chtop
XM_007254718.2 mRNA upstream 338732 13114501 ~ 13115971 (+) True LOC103032168
XM_022683070.1 mRNA upstream 343942 13099038 ~ 13110761 (+) True LOC103031854
XM_007254751.3 mRNA downstream 63 13463299 ~ 13468103 (+) True LOC103042421
XM_022683083.1 mRNA downstream 196651 13659887 ~ 13666328 (+) True LOC103043039
XM_022683084.1 mRNA downstream 196651 13659887 ~ 13666328 (+) False LOC103043039
XM_007254742.3 mRNA downstream 207107 13670343 ~ 13794112 (+) True LOC103039331
XM_015607225.2 mRNA downstream 209036 13672272 ~ 13725147 (+) False LOC103039331
TU267853 other upstream 92045 13324386 ~ 13362658 (+) True G197334
TU267673 other upstream 490359 12956860 ~ 12964344 (+) False s100a14
TU267630 other upstream 526179 12889358 ~ 12928524 (+) True LOC103029421
TU267531 other upstream 680207 12715368 ~ 12774496 (+) True G197106
TU267214 other upstream 2037115 11402194 ~ 11417588 (+) False mrpl24
TU268310 other downstream 1003183 14466419 ~ 14468882 (+) False tac1
TU268380 other downstream 1331184 14794420 ~ 14796728 (+) True G197665
TU268755 other downstream 2858767 16322003 ~ 16328158 (+) False ppp1r11
XR_002651696.1 other downstream 2881881 16345117 ~ 16359668 (+) True atat1
XR_002651698.1 other downstream 2961697 16424933 ~ 16430534 (+) True LOC111195522

Expression Profile