RNA id: XM_015607225.2


Basic Information

Item Value
RNA id XM_015607225.2
length 2585
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC103039331
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13670343 ~ 13794112 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGACACTACAGttcacgtctctctctctctttctttttcctgtcCTCTTCCGCTCTCCTCTCCATCCGTGGTCCTTTAGGCAGGCTGTAAGCAGGGATGGCGGAGCTGGAGGGCTTCGAGTTCGGCAAGTCGGACTTTGTCCTCCTGGACGAAGTGACAATGGAGCAGTTCCTGGACAACCTGAAGATGAGGTTTGAGAAAGGCCGGATCTACACATATATTGGTGAAGTCGTGGTGTCGGTCAACCCCTACAGGCAGATGGACATTTATGGTAAAGATGCGATTGATGCGTATAGAGGAAGAGAGCTGTATGAAAATCCTCCACACCTGTACGCTGTGGCTGACGCAGCCTACAAGGCCATGAAGAGACGAGCGAAAGACACCTGCATTGTCATATCAGGTGAGAGTGGAGCAGGAAAGACAGAAGCCAGTAAATACATCATGCAGTACATTGCTGCCATCACTAACCCCAGCCAGAGATTAGAGGTTGAGAGTGTGAAGAATGTGCTTCTGAAATCCAATTGTGTGTTGGAGGCTTTTGGGAATGCTAAGACAAACCGCAATGACAATTCCAGCCGCTTCGGAAAGTACATGGATATTAACTTTAACTTCAATGGAGACCCTACTGGAGGACACATCAACAACTACCTGCTGGAGAAGTCGAGAGTTGTGCAGCAGCAGGAGGGGGAGAGGAACTTCCACTCTTTTTACCAGttactGCGAGGAGGATCTGAAGACATGCTGAAGTCTTTACACCTGAACAAAGACCCAACAGACTACACCTACACCCAACAGGGAGCCTCCGTCACTACTGCATCCTCAGATGATCGTTGCTGTCACAAAGCGGTTATGAGTGCACTGAAGGTGATCGGTTTCACTGAAGCGGAGATCAACTCCATATATAAAATTCTGAGCACTATTCTACACTTGGGGAACCTGCAGTTTGTGAGTGATGGAGAGAGCGTCCAGCTGTCAGAAGGAGATGCAGTACAGCACATCGCTGAGCTGACCTCCACTGAACCAGAGAGTGTTAATAAGGCCCTGCTGTACCGCACTGTGGCCACCGGGGGAGGAGAGGTCATTGAAAAAGGTCACAGTGAACAGGAAGCAAGTTACGGGCGTGATGCTTTCGCTAAGgcCTTGTATGAACGATTGTTTGGGTGGATTGTGGGGCGAATCAATAGCGTGATTGAGGTGAAGGACTACAATCCAGCACTGCACGGAAAAAACACGGTCATAGGAGTTCTGGACATTTACGGCTTTGAGATATTTGACAATAACAGTTTTGAGCAGTTCTGTATTAACTACTGCAATGAGAAACTGCAGCAGCTCTTTATTGAGCTCATCCTGAAACAGGAGCAAGCTGAATATAACAGAGAAGGCATTACCTGGCAACATATTGACTACTTCAATAATCAGATCATTGTGGATTTGGTGGAGCAGCCCCATAAAGGCATCATTTCTATTCTGGATGACGCCTGTCTGACTGCAGGAAAAGTTACAGACACTGTCTGCCTGGACAGTATGAACCAAAAACTCGGACAGCATGCTCACTATACATCCCGCAAGCTGTGTCCCACTGACAAGACCATGGAGTTTAACCGCCACTTTCGCATCCGACACTATGCTGGTGACGTCACGTATTCAGTGGAAAGCTTTCTCGACAAGAACAAGGACCCGCTATTCCAGGATTTCAAACGGCTGATGTTTAACAGttTGGACCCAGTGCTTACAGAAATGTGGCCTGATGGGAAGTTGAGTATTACAGAGGTGACGAAGCGGCCGCTGACCGCTGCTACTCTCTTCAAGAACTCCATCATCGCTCTTGTTGACAAGCTTGCCTGCAAGatgctgtgaagtttCGTAGGGAAGCTTTCCTAGAGAGAAGAtttacagtattgtgatatcatcatTATCGTGGGTCATTATCATGTACTGTAATAGTATCATAGCATGGATGCCCTGTGATTAGAGATTGGCAGATGtttgatttaaattaaatattcagtaatttattcatattttagatAGAACTTTATTGGCTAACTATGCATGCCTGAAAAAATGATCGTAGTCCTATACAAATCTAATGCTGGGGCCACAAGCAGTACTGATACTAATTCACCATCCACACCCCCATCCTGGCCTGACCTACTTCAGTCTCACTCtcagaaaactgtaaaacttgGCAACCCTGAAACTACACAGAGTGCAGGTACAGGTCACAGAACAGTgagtacaaaggacaataaacacacagattataactacagtaaatacatGTAGTTTTGACAGTAgtacaataaatgaatatgTACATTCAAAAGCACTTTAATAGgaacattatattttaaaactgtaggAATTCTCTGTCTTCAAGACTCAAAAACAGCTTTAATCCTTCAAGCGATGGATTCCACAAGACCTTAGAAGGAAATGTTTGAGATTCTGATTCATGTTGAAATGATTTCATCATGAGATTTCTGCAGATTCAGTGGGATAGAGCTGAGCAGTATGTTATTTCAGCATCGTCATCAGTAGATCTTTTGTGATatttacattattgacttaaaattagaattag

Function

GO:

id name namespace
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268013 lncRNA upstream 13619 13653688 ~ 13658653 (+) True LOC103039008
XR_002651690.1 lncRNA upstream 13712 13653684 ~ 13658560 (+) False LOC103039008
TU268082 lncRNA downstream 144399 13869546 ~ 13876652 (+) True G197480
TU268090 lncRNA downstream 173816 13898963 ~ 13900419 (+) True G197487
XR_002651731.1 lncRNA downstream 188937 13914084 ~ 13917087 (+) True LOC111195567
XR_002651732.1 lncRNA downstream 188937 13914084 ~ 13917087 (+) False LOC111195567
TU268104 lncRNA downstream 192201 13917348 ~ 14032282 (+) False G197495
XM_022683083.1 mRNA upstream 5944 13659887 ~ 13666328 (+) True LOC103043039
XM_022683084.1 mRNA upstream 5944 13659887 ~ 13666328 (+) False LOC103043039
XM_007254751.3 mRNA upstream 204169 13463299 ~ 13468103 (+) True LOC103042421
XM_007254733.3 mRNA upstream 209036 13454703 ~ 13463236 (+) True LOC103036495
XM_007254732.3 mRNA upstream 225049 13439492 ~ 13447223 (+) True LOC103036187
XM_022683430.1 mRNA downstream 177620 13902767 ~ 13905038 (+) True LOC103030231
XM_022683434.1 mRNA downstream 261890 13987037 ~ 13988938 (+) True LOC111195557
XM_022683094.1 mRNA downstream 562887 14288034 ~ 14293068 (+) True rpa3
XM_007236460.3 mRNA downstream 576763 14301910 ~ 14339402 (+) True col28a1
XM_022683091.1 mRNA downstream 624910 14350057 ~ 14364677 (+) True sdhaf3
TU267853 other upstream 309614 13324386 ~ 13362658 (+) True G197334
TU267673 other upstream 707928 12956860 ~ 12964344 (+) False s100a14
TU267630 other upstream 743748 12889358 ~ 12928524 (+) True LOC103029421
TU267531 other upstream 897776 12715368 ~ 12774496 (+) True G197106
TU267214 other upstream 2254684 11402194 ~ 11417588 (+) False mrpl24
TU268310 other downstream 741272 14466419 ~ 14468882 (+) False tac1
TU268380 other downstream 1069273 14794420 ~ 14796728 (+) True G197665
TU268755 other downstream 2596856 16322003 ~ 16328158 (+) False ppp1r11
XR_002651696.1 other downstream 2619970 16345117 ~ 16359668 (+) True atat1
XR_002651698.1 other downstream 2699786 16424933 ~ 16430534 (+) True LOC111195522

Expression Profile