RNA id: XM_022683204.1


Basic Information

Item Value
RNA id XM_022683204.1
length 1677
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC103042327
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25529404 ~ 25560124 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCAGTGTGAAGTGTGAAGAGGAAGGAGAGCCTGCAGAGCGGTTACCGACTCCGATCCACTTTCTCCGGCGATTCTCACGGGATTTCAATGTTCAGCCTGTTTTTTtgtttctgtgtagatttgggcCGCACATTTATGGCGTTTGTGAGCGGAGACTTCTGCCAGGCACAGCACCTCTCCTTTGAGAACAAGTGAATCATCAGCCCCCTGCGGGACTACGCTACCCAGAAACCCCCCTGACAGCAAACACACTGGGCCTTGTgtgtttctcattctctctcatatCCCCCTGGGATCAAGCATAGTCCTCAGCCTGAGCTCAAACGAGACCTCCCTCCCTTCCCTGCAGCTTTCTGTCTGTACAGTCAGTCAGAAACACCTCTCCTGAATGGGGTAATCTACAGTTGTCTCATTGGATGACTGAAGGCCGTCTCGCCAACATGAACCGCCCTGCCGCTGTTGAAATTACCTATGAGTGCATGAGGTTCCTCATCACGCATAACCCCACCAACTCTACCCTCAACAAGTTCACTGagGAGCTGAAGAAGTTTGAGGTGAATACacttgtgcgtgtgtgtgaggccACATACGACAAGGCACCTGTAGAGAGGGAGGGCATCCAAGTCCTGGACTGGCCCTTTGATGATGGAGCTCCACCCCCCACCCAGATTGTTGATGATTGGCTAAACCTCCTGAAGACTAAATTCCGAGATGAGCCAGGATGCTGCATTGCTGTCCACTGCGTGGCGGGATTGGGCCGAGCACCTGTATTGGTAGCCTTGGCCTTGATAGAGAGTGGGATGAAGTACGAGGATGCGGTGCAGTTTATACGACAgAAGAGACGTGGAGCCTTCAACTCCAAACAGCTTCTTTACCTCGAAAAATACAGACCTAAGATGCGGCTGCGGTTCAAGGATGCCAACGGTCACAATTGCTGCATCCAGTAACATGTCAGTTGTACACAACTAATGGGAAATTTTGCCTAGGGGAGAAAGTACATGCCGTGGGTAATTATTGTGATGATGATTTATACTCTGAGTCATGGCTAATCGATCACAGAGATGTAATGAATGAAAGCTATTCTGTGGATTCACCAGCTGTATGAATGAAAGAGGTCAAAGCACACAGATAAGCCTGGCCTTCTGGTTATCAATGTACCAGTACCAGGCTACAATAAACAAGGTGTGGCCCTTCTGATCTCCCAATTGTCCAAACTTGGgatagctttttatttttaattgttttgaaaattatgatttcaaCCATGGTGAAAGTATTTACAGTTGTGGAATGCTGATGATGCTTTTGATTATGATGAACATCACTGTTGTAATTGGAAAAGATGATGTgcatagcttaaaaaaaaaaagtcacaagaTAGTACcttgttttattaaaacaacaacTCTTAAGTTGTTCAGAGGAACCGGAGCATTCTTTGGAAATACAGTGCTGTTCTCCCCCTTCCTTGAAGTCACTTTTAATTTAGGGTCAGGCTGGGTTTAAATGTCAactgtatttattcactataatTAGTGTGTCTTGTCAGGAGTACGGTCGGGGCCagggcacttttttttttcttcctaatGGAGCCATGTTATCTTCACTTTTGTTTTCTGAATCTTTGGGGAGTGCAATATTCAGTCCAGCTTAGAGAGCAGTCATCTTTAGGAC

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18041 PTP4A; protein tyrosine phosphatase type IVA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271050 lncRNA upstream 150579 25378579 ~ 25378825 (+) True G199684
TU271049 lncRNA upstream 151258 25377397 ~ 25378146 (+) True G199683
TU271032 lncRNA upstream 220457 25308642 ~ 25308947 (+) True G199669
XR_455590.3 lncRNA upstream 228548 25297042 ~ 25300856 (+) True LOC103041709
TU271134 lncRNA downstream 364095 25924219 ~ 25925193 (+) True G199739
TU271135 lncRNA downstream 364095 25924219 ~ 25924536 (+) False G199739
TU271136 lncRNA downstream 364790 25924914 ~ 25925193 (+) False G199739
TU271137 lncRNA downstream 364790 25924914 ~ 25925353 (+) False G199739
TU271139 lncRNA downstream 369800 25929924 ~ 25930410 (+) True G199741
XM_022683203.1 mRNA upstream 3318 25416568 ~ 25526086 (+) True col8a2
XM_015608253.2 mRNA upstream 3318 25416568 ~ 25526086 (+) False col8a2
XM_015608266.2 mRNA upstream 152202 25370501 ~ 25377202 (+) True trappc3
XM_022683200.1 mRNA upstream 453613 24648033 ~ 25075791 (+) True csmd2
XM_007249264.3 mRNA upstream 1278015 24241364 ~ 24251389 (+) True LOC103034043
XM_022683205.1 mRNA downstream 7548 25567672 ~ 25579392 (+) True anln
XM_022683207.1 mRNA downstream 7548 25567672 ~ 25579392 (+) False anln
XM_022683206.1 mRNA downstream 7548 25567672 ~ 25579392 (+) False anln
XM_007258838.3 mRNA downstream 20864 25580988 ~ 25587640 (+) True ak2
XM_007258839.3 mRNA downstream 20864 25580988 ~ 25587640 (+) False ak2
TU270302 other upstream 3306368 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 4146404 21358464 ~ 21383000 (+) False LOC103037930
TU269957 other upstream 4726514 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 5440417 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 5451109 20053051 ~ 20078295 (+) False fndc5
TU271111 other downstream 57804 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 57910 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 57910 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 1050305 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 1724096 27284220 ~ 27284567 (+) True G200104

Expression Profile