RNA id: XM_007258836.3


Basic Information

Item Value
RNA id XM_007258836.3
length 4602
RNA type mRNA
GC content 0.49
exon number 10
gene id rnf19b
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25589548 ~ 25614781 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGCTATTCAAAGTTTTAGATTTTTCGAAGATCTCACATTTGTTTTGACTAAATGGACCAAATGGAAAAAATGTGatatatgtttatttctttatataaaaGAGAGACGTCAGGATATCATTAAGAAAATGGTGGTGTATGTTTATATTAGCTACAGAGGCTGTGATCACCATTctctataaacaaaataatgtgtaatttatCCAAATTTAGTACTTATTCAAAGTTTCAGAATCAGTCAGAATGTCCTAGGCGTCTAAAAGGTTTTCTTGTTCTGTAGCAGGAGGTATCATCTGTGTTGTTTACGCCTTTCAGACGAATGAATCAGTGACTTAATAATGTGGCTGTGTTAGTCATGCTACACCTTAATGCTCTGTAAGCTAACCCTCCATTCATTGCGAAGGAGAATGTTGTCAGTGTTGTGCGTCACTGATCCTGAGATATCAGTCTGGTGTTGTTATGATTAAATGGAGGTGGTCTTGTGTTTTTGAAGAAGTTTGAGAGACTCAAACCAGCTCCAGAATGAATTCAAGACACAGCAGGGGCAGTcgcagcttgctggttttgtaaGGATGGGACAGTGATCAACAGAGCCACCTGTTCCACACAGACAGTCACCCAGCTTCCCAGCTTAAAGGGATTTCAGTAAGCACAAACAGCCCAGCAAAGGAGTTCATTTGTCTGTCTGATACTGCTACCTCTCATTGCTTTTGTCAGACTGCAGGCCGATTCAGAAAGGAGAGTGGAACAAACTGGAGCAGCTCGGCTCAGTGTAACCTGGAGAATACAGCTGCGGGAATAGAGGACATTAGCAGCAAACAAGCCTCCTGAAAGCATCGGAAGAGGACATCTTTActagccttttttatttattattttatttttaatggttatagaatatagcaaataaatgtatagatgattttgtgttttatgtatttttaaaaatctcagtttgcAGTAACAGTAAGTACATTTTTGAGTTGTTAGTATTGCTTATGTAATTGTTTGGCAATCGGCCTACTTGACTGTTAAGAGAACAAACTTGTAGGACAGCGAGGGGACTTTTTCAGTTTCTCTTTCCCTTCCTTTAGCCTTGCTGTGTGAAGGTTATCTTTCCGTTGATTGTATTATCGCTGGTTCCTGGTTAAACAAAGAAGGAAGATATGACTGTATGACTGGAATCGAATCCTCCAtcagtgtcagtaacaggaattcacttcctttttggacagttagggttttttttattttggtatcaGAAGTACGTAAGTGTTCTTCAGAAACAGGGCTGTGTAGGACTGAACAACTGAGAATTAGAAATCTTACACAAGTTTGTGTGGGAAGATTCAGCATTAAAACCCAGAGAGCCTTACAAGGACACAAGGTACAAGGCTCCATCAGGTCATTTCTGGGCAATGGGATCAGAAAAAGACTCTGAATCACCTCATTCGTCTGTCAGTGGCATTCCCAATCCCAAATGTCGTGGACCGGGCAAGAAGCAGAACAGGATCTCCTTCTCTAGCCTCTTCCACAGTAAACGGAGTTCTAGGGGCAGCAAAGCTAGCGTGGGCACACCTTCCCAGCAGCTTCACCAACAGCAGCAActccaacagcagcagcagcagcaacagcaacttCTTCAGCCTTCTACACCTACCGCAAATGCATCCCCGGACCCCCCAACCACCGGCGACTCAGCCGAGCCTTTGTCCTCCAGCCAGGCATCACTGGGAGGACAGGATCTTCTGGAATGCCCACTGTGCCTGGTGCGGCAGCCCCGAGATCAGCTGGCTGAGCTGCAGGGCTGCAGTCACCGCTCCTGCCTCTGCTGCCTGCGCCAGTACTTGCGCATCGAGATCACAGAGAGCCGTGTACAGCTCAGCTGCCCCGAGTGTGCAGAGAGGCTGGCCCCCAGGCAGGTGGCCCTCATCCTGGACGATCCTGCCCTGCTGGAGAAGTATGAGGAGTTTCTGTTAAGGCGATGCCTCGCCTCGGATCCCGACTGCCGCTGGTGCCCTGCCCCAGACTGCGGGTTTGCAGTCATTGCCTCAGGTTGTGCCAGCTGTCCCAGACTGGTATGCCGCAGGGAAGGGTGTGGCGCGGAGTTCTGCTATCACTGCAAGCAGGCCTGGCACCCCAACCAGACATGTGATTCAGCCCGGCAGCAGAGGGCACTCTCCCTGAGAACACACAGTACCCACTCGCCCAGTTACACAGCCGAGCAGGGTCCCACTGATGACATCAAGCCCTGTCCCCGATGCGGAGCCTACATCATCAAGATGAACGACGGCAGCTGTAATCACATGACCTGCGCCGTGTGTGGCTGCGAGTTCTGCTGGCTCTGTATGAAGGAAATCTCCGACCTGCACTACCTCAGTCCATCAGGTTGTACCTTCTGGGGAAAAAAGCCATGGAGTCGCAAGAAGAAGATCCTGTGGCAGCTGGGAACTCTGATTGGTGCCCCAGTAGGCATCACACTAATTGCTGGCATTGCAGTGCCTGCCATGGTTATTGGCATCCCGGTTTACGTAGGGCGTAAGATATATGCTCACTATGAAGGGAAGAAGACCTCTCAGCACAGGAGAAACCTGGCCATCACGGGGGGTGTGGCCCTGTCCATTATCACAGCACCAGTTATTGCTGCTGTCAGTGTGGGTATTGGTGTACCCATCATGCTGGCATACGTGTATGGTGTGGTGCCAATCTCCCTCTGCCGTGGCGGGGGCTGTggagtcagcagagggaagggACGTGGTGTCAGGATTGACTTTGATGAAGACGATGGGCCCATTACAGTTGCTGACGCATGGCGTGCACTGAAGTCTCCCAGTCTCGGTGAAAGCAGTCTGGAGGGAGGGGCCAGCGGCCTCAGCACCACCTCACCAAGTGAAGGCATGTCTGTGGCCCCTGGGGGCTTAGGGGACACGCCCCACTTCAACACATTAGCAGGAGGAGCTCTGGGAGCTCGAACAGGAAAATACAGCAGGCTGGAGGTTCAAGGTGCTGAGCTCGGAAAGGAAGGTGTACGAGAGACAGGAAGCTTGGGAGCAGCCAGTGATTGTGCAAGCACTCGAGGCATGGCCGGCTCCATAACTTCCTCCTACACCTTACCTGACAGggaAGGCACAAACCTTGAGATTCAGGTGGACATCGAAACCAAACCCAGCCATCTGTGTCTAACCAGCGAAGAGGATCTGGCTCCACCCACTGCTGCCATGGCCCATGGTTCGGGGGAGGAGCCTCAGGACTGCAGCTCCCGCAAAGGCGGAGTTTTATCCGGCTCGTCTCTGGGCCTGTCACCCGGGGGGTCACTCAGGGAGGGGCTTCGTGACGTCACACTTGCTCAGCCAGAGAGCATCCGCAGCGACCTGGAGATGTCCGACACGCAGTCAGACGACATAGCTGAGTTGACGTCAGACGACTGTGACTCCCCCCGCCCCAAAAGCGCCCGCCCACCTCCTCCGCCCCAGACCACCTGCCGAGCCTTGAACTCCAGCGACGGCCTGCACTGTCCCGACGTCATCCTGTAcgtgtgagggagtgagaggCTCTCGCTGTTGCACAGACCTAGCTGTTTATTACTGCTTTTATCTGGTTTATTTGCTGCTTTTTGTAACGATTATAACACACCTTAATGGTTCAGGCGATTCGGTGGCATGCGTCTGCCTGACTGCCTGTGGCTCTGTTCCTGTCTGCCTACAGAACTACAGACAGGGCTCTACCTCTACAACTATTCATACTGTTAGTAGTTCAGAAAgttgtttgtttactttttggTGCGAAAAATGCCTTGGctatttaagcaaaaaaaagaaaaagagagaaaaaaggataaATTGTAGGTACTACAATCGCCACAAATATCCTGCGAGCGaggataaaagaaaaacaatgctACAAAGTGAAATATCACCAAGcacacatttacagtatatgaGGAACTGTGGGGAGTGGGGAGGATTTAGATGGATTACAGTGTTTTCTATGTATGTTGGagtgtgaatgtttttttttttcattcattttttttttcttatttataacTAAGCGACCCGGAAAATTGTACGACTCGCTGCATGCATGTATATGCATGACCTGCGCTTGTATACGAGGGTAAAAGGCTAGTACGTAGTGGTTGCACTGACCAGGTTTGCACAGTGACGAGATGTAAATGGACCTGCACTCGAGTCTCACCTGCACAAAGAGCGGAATTCAGAGATGGGAGCCGGTCGTTGTTAAAGGAGATTGATCACTTTCCCCCAAGCAGACGGTTTCTCCCAGATCATTGTCTGCCTGCCTTACAGACGACGCTCACGCTCCCAGTCCTTTTCCCCACTGACTGACTGTCTGACTCACTGACAACACTGTCTGTGCCCACCTGTCTGCTATATGCTatgggtgtgtgagagtgagagtgtctttttatttgtttgtattaaagTATAAATGGATTAATGGCATCGACAGTGGGGCAGGCCACCAGATGCACTTTTCCcccatttttttttggaaacctAGCCCTGTGTCTACCCACCGCAATGTGTTTGAAATTATGCATTTCTGAgtaataaactgaattaaatggATGAGCTTTCTGCA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K11973 RNF19B; E3 ubiquitin-protein ligase RNF19B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271061 lncRNA upstream 44921 25516897 ~ 25548341 (+) True G199691
TU271050 lncRNA upstream 214437 25378579 ~ 25378825 (+) True G199684
TU271049 lncRNA upstream 215116 25377397 ~ 25378146 (+) True G199683
TU271032 lncRNA upstream 284315 25308642 ~ 25308947 (+) True G199669
XR_002651734.1 lncRNA upstream 292406 25297043 ~ 25300856 (+) False LOC103041709
TU271134 lncRNA downstream 309438 25924219 ~ 25925193 (+) True G199739
TU271135 lncRNA downstream 309438 25924219 ~ 25924536 (+) False G199739
TU271136 lncRNA downstream 310133 25924914 ~ 25925193 (+) False G199739
TU271137 lncRNA downstream 310133 25924914 ~ 25925353 (+) False G199739
TU271139 lncRNA downstream 315143 25929924 ~ 25930410 (+) True G199741
XM_007258838.3 mRNA upstream 5622 25580988 ~ 25587640 (+) True ak2
XM_007258839.3 mRNA upstream 5622 25580988 ~ 25587640 (+) False ak2
XM_022683205.1 mRNA upstream 13870 25567672 ~ 25579392 (+) True anln
XM_007258832.3 mRNA downstream 3235 25618016 ~ 25620135 (+) False ndufs5
XM_007258834.3 mRNA downstream 3277 25618058 ~ 25620135 (+) False ndufs5
XM_022683209.1 mRNA downstream 9776 25624557 ~ 25848463 (+) True macf1
XM_007258840.3 mRNA downstream 234747 25849528 ~ 25865274 (+) True LOC103023238
XM_007258842.3 mRNA downstream 261777 25876558 ~ 25880657 (+) True LOC103023870
TU270302 other upstream 3370226 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 4210262 21358464 ~ 21383000 (+) False LOC103037930
TU269957 other upstream 4790372 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 5504275 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 5514967 20053051 ~ 20078295 (+) False fndc5
TU271111 other downstream 3147 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 3253 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 3253 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 995648 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 1669439 27284220 ~ 27284567 (+) True G200104

Expression Profile