RNA id: XM_007258846.3


Basic Information

Item Value
RNA id XM_007258846.3
length 2660
RNA type mRNA
GC content 0.47
exon number 17
gene id LOC103024803
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25907057 ~ 25922411 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCCTGCAACTGCAGCACGTAGTAAATAACAGGAGCATTGTCTTACACTCGGCGAGAACATCTGCAGCAACTTTCTCCACTTTTTCAACCTTTTTTGAtcttaagaaaaaaagatttgcatgaattttattttttcactggaCAATCGAGCTTAACCGGTAAACGATTAACCAGGAGAGGCTACAAGGGCTCACAGCTTGGAAACAAACTAAAAATGGAGGAGATTCAGATTGAGTCCAAACCTCTGCTTGTGGAGAAGGACCTCCAGggaCTGAGAGAGGCTGTTCAGCAGCTTGAAATAAAGGAGCATGATGTGGAGACCCCTTATGGCAGGGTCCACTGCACCATGAAGGGGGTTCCTAAAGGAGACcgacctgtcattctcaccctTCATGACATTGGACTGAACCACAAGACATGCTTTGACACCTTGTTCAGCCATGAGGACATGCAGGAGATCATGCAGCATTTTGCTGTGTGCCATGTGGATGCCCCAGGACAGCATGAGGGTGCCAACACCTTCTCTACCGGGTATGAGTATCCTTCCATGGATCAGCTCTCTGAGACCCTTCCTCTGGTCCTGAAACATTTTGGTCTGAAGAGTGTGATTGGAATGGCGGTTGGAGCCGGTGCCTTCATCCTCGCAAAGTTTGCTCTGGACTACCCTGCTATGGTGGAGGGTGTCGTTTTGATCAACATCAACCCATGTGCTGAGGGATGGATGGACTGGGCAGCTCATAAGatCAGTGGTTGGACTCATGCCATGCCAGACATGCTGATCAGTCATCTCTTTGGAAAGGAGGAAATCCAGCTCAACCATGACCTAATTGGCACTTACCGCCACCACATCCTCAATGACATGAACCAGTTCAACCTGCAGCTCTTTGTCAAGTCATACAACAGCCGGAGGGACCTGGAGATTGAAAGGCCTATTCCTGGTGGAGCTGTCAATGTTAGAACCATTAAGTGTCCCTCTCTTCTAGTGGTTGGAGACAGCTCTCCTGCAGTGGATGCTGTGGTTGAATGCAACACCAAGTTGGACCCAACCAAGACCACACTGCTCAAGATGGCTGACTGCGGAGGCTTGCCTCAGGTTGACCAGCCTGGAAAGCTGACAGAAGCCTTTAAGTACTTCATCCAGGGCATGGGCTACATGCCCTCTGCCAGCATGACCCGCCTGGTCCGCTCCCGCACAGCCTCTGGCTCCAGTGTCGCCTCCTTCGACGGCAACCGCAGCCGGTCACACACCAACGAGGGCAGCCGCAGCCGCTCTCACACCAACGAGGGCCGGGCCCGCGCCCACACGGCCGATAACCAGCGCGGCCGCTCCCACACCGACACCATGGACACCTCCGTGGACCAGACCGTGATGAAGTCCACTGAAGTGTCGTGTTAAAGAGGCTCCTCTGAACCTCCCCTAAACCTCACCACACAACTTTCTTTTCCCCCTGATCTGTGCGTGCTGCGCTGCCACTAAAACTAACAGCCACGGAGTGCAGGCCACCTGCTATTGGGCCCACCCTCAAGGCCTCCCCGTCCCCTGTAGCACTGTGATAGTCACAGAGCGAGTGTGTCTAAGCCAAAGAGTCTGTCTGCCATCTGCCATGGCCACTTTTTGAAGGTGTCCACTGGACAAAGCTGTGGGGGAGATGCGACATAAATGAGGGTGGAGGCTGATCGCTCCCTTATTCTGCACAACCTGCCATTGTTTGATGGTGGCTTTATTGTTATTAGGGGCAACGCAGCACAGAGACACTGTGATGGAGAGTCGGAGAGTGCTTTGCTCTTAAGGGAGCATAAACGTTTGTAAATCTGTGTTCATCTCCTTTCATCAATTTTACTTTCTTTGCATTTACTTGACTGTAGTGTCACTTACCACCGAATGACTGTAAATGGCTGACTTTTATAACAGTACTATAATACTTGCTTACTAGTTTTAATACATGATTCATTTTCTGTATTATGTTGGACAGACTGCAATGAGTGATGGCAGGCTAGGTTGGTTACTgggaagcattttttttttcaatgctacctaccttttaaaaaaaaataagggacacGCACAGACTATTTTCCTTTTCATTTATCTCTGTGGGATTTACCCTCCGTTTTGGGGTTATATTTGTAACCCAGTGATTGTTGTTCTTTAAcatgatctgtttttttattttattttatcgaTGATTAATGATCAAATGATTGTAAAAAGCACATTCAGAACATTCCAAGAAAGGTGGCGCCTCTCGttcttaaaaaacaatgaaGCAACAATAAACACACTGTAGGATACACAACTGTAGGGTTTGTATCTGTATGCTGAATTATACGGAGAACTAATTTATGCACCATTGACGTTTTGGACCTTAATGATCATTTCTATGCAATTAAGCACAACAGAACAAAATGTGCCATGGAATCCACTGCTTGGACTTaatgtttcttcttttcttttctgtggtGGTTTTGAAAGAGCAAATGGAGAAATTGTAACGCAGCTACTCCTGTACTACTTGCACTACAGCACAGACTTGCAGGCTTTTAGAATACCTAGCTTTGTAAAGATGCACAACAGCCCAAATGCAGATCAcactatacatttttaatgggataacagtttgtatttatttaaaaaagaaaataaaaaacatgtaactcTG

Function

GO: NA

KEGG:

id description
K18266 NDRG1; protein NDRG1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271061 lncRNA upstream 358716 25516897 ~ 25548341 (+) True G199691
TU271050 lncRNA upstream 528232 25378579 ~ 25378825 (+) True G199684
TU271049 lncRNA upstream 528911 25377397 ~ 25378146 (+) True G199683
TU271032 lncRNA upstream 598110 25308642 ~ 25308947 (+) True G199669
XR_002651734.1 lncRNA upstream 606201 25297043 ~ 25300856 (+) False LOC103041709
TU271134 lncRNA downstream 1808 25924219 ~ 25925193 (+) True G199739
TU271135 lncRNA downstream 1808 25924219 ~ 25924536 (+) False G199739
TU271136 lncRNA downstream 2503 25924914 ~ 25925193 (+) False G199739
TU271137 lncRNA downstream 2503 25924914 ~ 25925353 (+) False G199739
TU271139 lncRNA downstream 7513 25929924 ~ 25930410 (+) True G199741
XM_007258868.3 mRNA upstream 19659 25885213 ~ 25887398 (+) True LOC103031356
XM_007258842.3 mRNA upstream 26400 25876558 ~ 25880657 (+) True LOC103023870
XM_007258840.3 mRNA upstream 41783 25849528 ~ 25865274 (+) True LOC103023238
XM_022683209.1 mRNA upstream 58594 25624557 ~ 25848463 (+) True macf1
XM_007258832.3 mRNA upstream 286922 25618016 ~ 25620135 (+) False ndufs5
XM_007258848.3 mRNA downstream 37041 25959452 ~ 25969352 (+) False sla
XM_022683212.1 mRNA downstream 37042 25959453 ~ 25969352 (+) False sla
XM_007258849.3 mRNA downstream 37300 25959711 ~ 25969352 (+) True sla
XM_022683214.1 mRNA downstream 75818 25998229 ~ 26074411 (+) True ctnnal1
XM_022683215.1 mRNA downstream 76454 25998865 ~ 26074411 (+) False ctnnal1
TU271111 other upstream 286928 25617928 ~ 25620129 (+) True ndufs5
TU271109 other upstream 286928 25618034 ~ 25620129 (+) False ndufs5
TU271110 other upstream 286928 25618034 ~ 25620129 (+) False ndufs5
TU270302 other upstream 3684021 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 4524057 21358464 ~ 21383000 (+) False LOC103037930
TU271396 other downstream 688018 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 1361809 27284220 ~ 27284567 (+) True G200104
trnai-uau_8 other downstream 1567632 27490043 ~ 27490136 (+) True trnai-uau_8
trnai-uau_9 other downstream 1568526 27490937 ~ 27491030 (+) True trnai-uau_9
TU271825 other downstream 1892925 27815336 ~ 27818650 (+) True G200235

Expression Profile