RNA id: XM_007258848.3


Basic Information

Item Value
RNA id XM_007258848.3
length 3188
RNA type mRNA
GC content 0.41
exon number 8
gene id sla
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25959452 ~ 25969352 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGACACTGCGTTCACACATTTAGACTCTGAGCTTCATACTGAAACGGTCAGAACAGGGTGTTCTGCTGCTGGTCCTTTAGGGTCTCTGCAGATCCAGCCTAAGTACACCTGACTGGGCCAACAGTTGTCTGGTTGGAAGCATCTGTACAGGTCTATGTATGATGACTGGCCTGCCTGCACTTTAGTTCAGTGTTCTCTGAGAATGAGTGGATATGTATCAGTTTAACAGCTGAAGTAGAGCACTGCAGCTTTCTTCCTGGATCACCGGAATGGGAAATGCAATTAAAAGCCAAAAGGGGCAGCCTGATGAGAGCCAAACTGAAGCACTAAAAGTCACAGATTATGATAACTTGATAGTACTCGCTGATTACCCATGCCGTGACATCAGCGAGCCGATCTTTAAGATGGGGGAGAGACTCCGGGGTCTGTCTGAGGACGGCTGCTGGTGGAGAGTTCGCTCTTTCCAGACAGGAACTGAGAACTACATCCCAAATAATCATGTGGCCAAGGTTTATCATGGGTGGCTGTTTGAGGGAGTGGCAAGGCTAAAAGCGGAGGAGCTGCTGCGCTTACCCGGCAACGCAGTCGGCTCGTTTCTCATCAGGGAGAGTCCGAGTCAACGAGGTATGTATTCTCTGTCTGTGAGACACAGAGCAATTAAGCACTATAAGATCTTCCGCATGGCCAACAGTTGGTACTACATCTCCCCTCGCCTCACCTTCCAGTGTCTGGAGGACATGGTCAACCACTACTCAGAGAGCTCAGATGGCATCTGCTGCGTTCTTACTTCAccgtgtctgtctctttctactCCTGCCACGAACCTGACCACACAAGCGCCCCCTGTGGTGATGCGGCGTAACTTTgactggaaaaaagtggaaAGGTCCCAGCTGTTGAATCCCTCTGAACAAAGTGAAACGGACAGCAGGCAGAACATGGTGAGCTTTGGGGTGAGGAACAGCATTGCTGCCTATCTCTCAGTATCTGATATAGAGCAACAACGGCCAAAATCACACAGAAACAAGAAGAGCAAGTCTGTCTACGTGATGCCGGACTCCAGCAGTATGGATATACAGGAGGACAATTAGTGCATGCACAGAGATGTTCAGAGCTCATGGAAGTACTTACCGAGACGATGTGAAGGAGAGACATTTCAGTCTTTTTATGTAAACACTGAACCTCTGAATGAATCTTTCAGTTAATATTAAGGGAAGATggcataaatatttaaatatttgagaATTGTGGATGTAGAACCACCAGAATGATTTACTGAGGGTGCGCTAACTGTTATACATATGTATGtgtctgtatatataaataatagtatagtactgcacaaccacacacacacacacacacacacacacacacactcttcttaGACCCTCAGAGGCACTTTATTCATGACTGTGGGGATAGAAAATAAAGAGATGAGAATCATAAGGACACTCCATCTCAAATACTATACTTTTCTCCAAAATCTGAGCTGAGATTAAAACATAAGCctggattttttgtttttttcttttggacaAAAAGAAGAGATTTTCAGCGATTTTCCAAACGTGTTGGCTTTTTCCTTACACAGGAATTAAGGCATTGTGCTGAATTGCAGGAGAGGAACACACCGTGCCTCTGTCGAGGCAAACATCCGCACACTCGGACCGTTTCTTGGCAGACCTTGGCTCTTCGTTCTGCTCTGCTGTTTGGATGAAGTGCTTTAAACTCCTTAAAGCCTCATGATCTCCAAATGGGGTGTTGATTAGAGACATTTGTTTGTGTCAAGCTTCCATCTGAGATCACTTAAGCAGCACTTCAAGTGGAGCTAAAATAACTTCCGATCACTTCTGCTTTATTACAGCTTAGGGACACATGATTGGTTTTCTTTAATGCACATTTAGTAAAGTTACTCATTCATGGTGTTTATTCAATGTCATATTTCACAGTGTCACTGCTTGGTGTATGTACAGACTCTGCAAAGAATAGTTTATATCTgaagtttgcttctttagtgttgcactggaactacataaaatatatgcacatgcacacaaaaatgaaaaggcccaattaaaatgataaagtaaCTGAATACAAAGCATTTTTCAGGTAACTCATCTACAATACAATGCATACTGAATTAGTAAATGAGCTGTAGCTGACATGTCTTAAATACTGTGTAAGATTTTTCCTGTGCCCCTCCCACAGCAGTTTGTGTACTGCTAATTCCAATCTGCAAGTTAGGATTCATGATTTCACATGACGTTCCCAGACTGGGAGGCTTTTGACAATGGAGCTCTGAGCTCTTCTTGCAGGGGATTTGAACAAGTGTGACATCCTCACACTTGATAAGCAGCAGCTAGACCTTAGGGCCACCCTAGAGCTGTGAAATGAAACTTCCTGTCACTTTTGAGTACATAGAGTTCTATGTTCTTTCTTGAACACAGATATGTAATTTTTCTCACAGTCCTAGAGTCCTAGAGTGCAACAGTCTAATTACCTTCTTGTCAAGAGGCAGAAGATCATAAAATCAATCCTATCAACACCACAATCCTACATATTCAGGATTTTAAAATAGAAAGGCCCTCCCTCATGTGAAAACACATCTTACAAATTATTTCAGCTGCAGCTCTatttaatatgcatttttttttataccaaacGGAGATGCAGAACAAACATGTTGGATGACTGTGCGATTATACCGATTTGTTATAGTTTAAAGGTCCATAGACTTGTTTAACATAATGAAGTGCTGCACAGATAATGTAGATTGTACTGGAGATTTAAATCTACTGCCGTAGCAACTGTACAGTAGTGACTTGTGTTGGGTAAGCTTTTGTTGAGATATACTGAGAACAGATCTCACATCTGAGAAAACCACTACAGAGCGCTGAGCCTGTACTTTGGTTTCTCACTCTGCTGCTTCACAGAGTGTAGTTACATCATTTATAAggttatattacatttattatatgcaatataatatagtatattattgCAGTAACTGTAGTAAAACAAACTGCTAATAATAAAGGTTATTTTATGGGCTAATGGGGTTAAAGAAccagaatgaatgaataaaagttGACCTCCAATATGAGGAAcactgtgttgtgctgtgttacAACTTACAACTTAGAAACCTACTATTTAATTAGTAAGTAAACTATTcaatttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271139 lncRNA upstream 29042 25929924 ~ 25930410 (+) True G199741
TU271137 lncRNA upstream 34099 25924914 ~ 25925353 (+) False G199739
TU271134 lncRNA upstream 34259 25924219 ~ 25925193 (+) True G199739
TU271136 lncRNA upstream 34259 25924914 ~ 25925193 (+) False G199739
TU271135 lncRNA upstream 34916 25924219 ~ 25924536 (+) False G199739
TU271146 lncRNA downstream 3456 25972808 ~ 25973082 (+) True G199746
TU271159 lncRNA downstream 154566 26123918 ~ 26133594 (+) True G199758
TU271175 lncRNA downstream 365364 26334716 ~ 26342264 (+) True G199767
TU271183 lncRNA downstream 515884 26485236 ~ 26485568 (+) True G199775
TU271362 lncRNA downstream 528099 26497451 ~ 26498105 (+) True G199910
XM_007258846.3 mRNA upstream 37041 25907057 ~ 25922411 (+) True LOC103024803
XM_007258845.3 mRNA upstream 37041 25907057 ~ 25922411 (+) False LOC103024803
XM_007258847.3 mRNA upstream 37041 25914807 ~ 25922411 (+) False LOC103024803
XM_007258868.3 mRNA upstream 72054 25885213 ~ 25887398 (+) True LOC103031356
XM_007258842.3 mRNA upstream 78795 25876558 ~ 25880657 (+) True LOC103023870
XM_022683214.1 mRNA downstream 28877 25998229 ~ 26074411 (+) True ctnnal1
XM_022683215.1 mRNA downstream 29513 25998865 ~ 26074411 (+) False ctnnal1
XM_022683213.1 mRNA downstream 109298 26078650 ~ 26113762 (+) True elp2
XM_007258855.3 mRNA downstream 616887 26586239 ~ 26613188 (+) True c23h18orf21
XM_007258856.3 mRNA downstream 645792 26615144 ~ 26623597 (+) True rp9
TU271111 other upstream 339323 25617928 ~ 25620129 (+) True ndufs5
TU271109 other upstream 339323 25618034 ~ 25620129 (+) False ndufs5
TU271110 other upstream 339323 25618034 ~ 25620129 (+) False ndufs5
TU270302 other upstream 3736416 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 4576452 21358464 ~ 21383000 (+) False LOC103037930
TU271396 other downstream 641077 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 1314868 27284220 ~ 27284567 (+) True G200104
trnai-uau_8 other downstream 1520691 27490043 ~ 27490136 (+) True trnai-uau_8
trnai-uau_9 other downstream 1521585 27490937 ~ 27491030 (+) True trnai-uau_9
TU271825 other downstream 1845984 27815336 ~ 27818650 (+) True G200235

Expression Profile