RNA id: XM_007258857.3


Basic Information

Item Value
RNA id XM_007258857.3
length 3623
RNA type mRNA
GC content 0.49
exon number 23
gene id LOC103028188
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 26627075 ~ 26747079 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctctttctctgcggCTCGGCGAGCGTTCTCTGTAAAGTTGCTTGATACGTTGCTAGTTCCTAGTTTGAACCAGGAGTCTGTTGGTGCTGCGCCATGCTGGTGATGTGTATCTGAGGAGAACATTCATTCTGTGCTCTGCTTGGTGCTGATCAGCCTGCGGGAAAAGTGGTCGAGCAGTGGCTGGTTCAGATAGCCGCCTGGCTTGGAGGTTTCTGGGTTTGAATGAGATCCGCAAAGCAGTGAAAGACCTTAACCCCAAACACTGCAGCCATGCCACCACCGGCAGACATCCTGAAGGTGGCCATCGAATGGCCAGGGGCCTTCCCCAAACTGATGGAAATAGATCAGAAAAAGCCACTCTCTGCTATCATTAAAGAAGTCTGCGATGGGTGGCAGCTGCCGAACCATGAAACCTATGCTCTGCAGAATGCTGACTCCACTAACTTCTACATCACAGAAAAGAACCGCAACAACATCAAAAACGGCTCTATCCTGCGGCTGACCACATCTCCTGCCCAGATGGCACAGCAGCTGTACGAGCGCGTCCAGTCATCCAGTCTGGACGTGAAGCTGGACGGTTTGAAGGAGCTGGCCAATTCCTCCAGAGACGTTACCTTCGCCCAAGAGTTCATTAACCTGGACGGCATTACTCTGCTCACTCAGATGGTGGAGAGCGGCACAGAACGGTATCAGAAACTACAGAAGATGATGAAGCCCTGCTTTGGGGAAATGCTTTCCTTCACACTGACGGCCTTTGTGGAGTTGATGGACCACGGCATCGTCTCATGGGACACGTTCTCTGTGGCCTTCATCAAGAAGATTGCCAGTTTTGTGTGCAAGTCCTCCATGGACTCCGCAGTGCTACAGAGATCGCTGGCCATCCTGGAGTCTATGGTGCTCAACAGTCAGGATCTCTACCAGAAGGTGGCACAAGAGATCACCATCGGCCAGCTCATGCCTCATCTCCAAGGaACGGATCAGGACATTCAGACTTACACCATTGCTGTGATTAATGCTCTGTTCCTGAAGGCCCCTGAGGAGAAGAGACAGTTTGATGAGAGCAATGTGAACATCCTTGATTGCCCCCTCACCGAGATGTCTCATATTCTCGCACAGAAGCAGCTGCGCTCCATTATTCTCCAGAACGTCATTAGGAGCAACAAACCCATTAACGAGGAGATGGCCCACCAGCTCTACATGCTGCAGGTCTTGACATTTAACCTTTTGGAGGACCGCATGATGACCAAGATGGATCCTCaggatcagGCCCAGAGAGATATCATCTTTGAGTTGCGCAGGATTGCCTTCGATGTCGAGTGTGATTCCAACAACAGTGGCAGTATTGATAAGCGCAAGTCCATGTACACCAGAGACTATAAGAAGCTTGGTTTCATCAACCATGTGAACCCAGCGGTGGACTTCACACAGATTCCTCCAGGGATGCTGGCTCTGGATAATATGCTCTATTTCGCCAGACACCACCAGGATTCATATATCAGGATTGTCCTGGAGAACAGCAGTCGAGAAGACAAGCATGAATGTCCGTTTGGCCGCAGCAGCATCGAGCTCACCAAGATGCTGTGTGAGATCCTTAAAGTAGGAGAACTACCCAGCGAGAACTGCCATGACTTCCACCCCATGTTTTTCACTCATGACCGATCTTTTGTGGAGTTCTTCTGCATCTGCATCCAGCTGCTCAACAAAACCTGGAAGGAGATGAGAGCTACGTCTGAGGACTTTAACAAGGTGATGCAGGTGGTGAGGGAACAGATCACACGTGCTCTGACAGCCAAGCCTAACTCTCTGGACCAGTTTAAGAGCCGCCTGCAGAACCTGAGTTACACAGAGATCCTCAAGATCCGGCAGTCTGAGAGAATGAACCAGGAGGACTTCCAATCCCGGCCCATTCTGGAGCTGAGGGAGAAGATCCAGCCGGAGATCATGGAGCTGATCAAACAGCAGCGACTGAACCGCCTGTGTGAGGGCACCTGCTTTAGGAAGATCAGCAGCCGCAGGAGACAGGATAAGTTCTGGTACTGTCGCTTATCGCCCAATCATAAAGTGCTGCACTATGGAGACCTGGAGGAGAGCCCTCAGGGAGAGGTGCCTCATGACTCTCTGCAGGACAAATTGCCTGTGGCTGACATCAAAGCCGTCGTCACCGGCAAGGACTGTCCACACATGAAAGAGAAGGGAGCCCTGAAGCAGAACAaggaAGTGCTGGAGCTGGCCTTCTCTATCCTCTACGAGTCTGACGAGTATTTAAACTTCATCGCTCCTGATAAACACGAGtactgtgtgtggACAGATGGACTGAACGCTCTGCTGGGGAAGGAGATGACAAGCGAATTCACCCGCTCGGACTTGGACACTCTTCTGAACATGGAGATGAAGCTCCGCCTCCTGGACCTGGAGAATATCCAGATCCCGGAGGCCCCGCCCCCTATCCCCAAAGAACCCAGTAATTATGACTTTGTCTATGACTGCAACTAACCCCCGCCACTGGACCAAGTGATTTCTTTTCTTAAAAACAaactggaagaagaaaaaaagaagaggaaaaaaaacttttagaaaactgtcaaagaaaataaacaaaaaaaaaaggatcaaaattttttgctttcttttcgCTACACTTGCtaaacttctttttttaaatgcgtATGATCAAAGCTAAGTGAGTTTGCTGGACTTAATGGATTTTGGCTCCAGGGGCCGGTGACCTGTCCCGTTTAGTAGGAGAGACACTATGTGTCCTCAGTTGGGTCCTCAGGTCCAAAAAAACCTTCACTGCACAAAAACCTTCTGCTGTCAGCTCGCCAACACCTTCTCATTTCACACACCACGCACCTGCTCCACACACTCTCACGCACATACGAACAGTGTCCTGTGTTAATGCTGAGTCCATCCCAAAGCTTTCAGTTTTTATTCCCATCCTTCCAGGCTGTTTAAGGTGAGAGCGTGTCCTGCTGAGCGTGTGCAGAGCCTGGGGACTCGGGCTTTTAGCACATAGCGCAGCATTACGTCTCTGACTCTGACTCGCACAGGCGGCAGCTAACGGCACAGAACACAGACCAGAACGACGGCAGGTCAGTGTAGTCCTAGTACATCTTCACTTCTGTCTCCAAGCATCTAGTGTTTTCTTCACAAACCTGTAGACTGTTAACTGAATACGGCAGTGTAATGAAAGAGGCTGCGTCCCATGTCTTACGTTAGCCCTGCTTTAAGTGGGCACACCCCAACACGCCAGCCTGCCCAGCCGGCCGGTGTGACTATAACACAAGCTTGCAAATACATCCCTCCCTTTTACTTGATACCCACCAGACTTGTGGTAGACTGCTGTAACATTCCAAAGCAATATTGAGCTTCTGTTTTTGTAAGATGGTGTAAACATTAGTGATATTCGTGCTGCCAAGTAGTCAGTATtagactattttttattttgttgttgttgttgtttttcaggACCATCGGATAAATTTGATCATTCAtgttaatttaagttaaatgaTATATCCTGTCACTGTTATATCTACcgtgattgattttttttttaatcccatcAGATGTTTATGAGCCCTACATCATGCTGTTTACATTAAAGATCAATTCCAATTCA

Function

GO:

id name namespace
GO:0006909 phagocytosis biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K12366 ELMO1, CED12; engulfment and cell motility protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271375 lncRNA upstream 129645 26525135 ~ 26525376 (+) True G199920
TU271362 lncRNA upstream 156916 26497451 ~ 26498105 (+) True G199910
TU271183 lncRNA upstream 169453 26485236 ~ 26485568 (+) True G199775
TU271175 lncRNA upstream 312757 26334716 ~ 26342264 (+) True G199767
TU271159 lncRNA upstream 521427 26123918 ~ 26133594 (+) True G199758
TU271443 lncRNA downstream 36938 26784017 ~ 26788851 (+) True G199965
TU271444 lncRNA downstream 36938 26784017 ~ 26788851 (+) False G199965
TU271458 lncRNA downstream 144550 26891629 ~ 26892574 (+) False cdk6
TU271593 lncRNA downstream 486402 27233481 ~ 27234147 (+) True G200051
TU271594 lncRNA downstream 486402 27233481 ~ 27234147 (+) False G200051
XM_007258856.3 mRNA upstream 31424 26615144 ~ 26623597 (+) True rp9
XM_007258855.3 mRNA upstream 41833 26586239 ~ 26613188 (+) True c23h18orf21
XM_022683213.1 mRNA upstream 541259 26078650 ~ 26113762 (+) True elp2
XM_022683214.1 mRNA upstream 580610 25998229 ~ 26074411 (+) True ctnnal1
XM_007259793.3 mRNA downstream 27812 26774891 ~ 26777801 (+) True rbm48
XM_007259796.3 mRNA downstream 84875 26831954 ~ 26892623 (+) True cdk6
XM_007259797.3 mRNA downstream 146768 26893847 ~ 26899447 (+) True fam133b
XM_007259798.3 mRNA downstream 152589 26899668 ~ 26916183 (+) True hepacam2
XM_007259800.3 mRNA downstream 174668 26921747 ~ 27131972 (+) True vps50
TU271396 other upstream 41839 26610429 ~ 26613182 (+) False c23h18orf21
TU271111 other upstream 1034892 25617928 ~ 25620129 (+) True ndufs5
TU271109 other upstream 1034892 25618034 ~ 25620129 (+) False ndufs5
TU271110 other upstream 1034892 25618034 ~ 25620129 (+) False ndufs5
TU270302 other upstream 4431985 22219265 ~ 22223036 (+) True G199091
TU271651 other downstream 537141 27284220 ~ 27284567 (+) True G200104
trnai-uau_8 other downstream 742964 27490043 ~ 27490136 (+) True trnai-uau_8
trnai-uau_9 other downstream 743858 27490937 ~ 27491030 (+) True trnai-uau_9
TU271825 other downstream 1068257 27815336 ~ 27818650 (+) True G200235
TU271914 other downstream 1234434 27981513 ~ 27983350 (+) False LOC103032101

Expression Profile