Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_007258868.3 |
| length | 1386 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 3 |
| gene id | LOC103031356 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035919.1 |
| NCBI id | CM008322.1 |
| chromosome length | 38085671 |
| location | 25885213 ~ 25887398 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0007179 | transforming growth factor beta receptor signaling pathway | biological_process |
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:0003146 | heart jogging | biological_process |
| GO:0010159 | specification of animal organ position | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0035054 | embryonic heart tube anterior/posterior pattern specification | biological_process |
| GO:0001568 | blood vessel development | biological_process |
| GO:0048318 | axial mesoderm development | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0051090 | regulation of DNA-binding transcription factor activity | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0021508 | floor plate formation | biological_process |
| GO:0032444 | activin responsive factor complex | cellular_component |
| GO:0008134 | transcription factor binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0019904 | protein domain specific binding | molecular_function |
| GO:0008301 | DNA binding, bending | molecular_function |
| GO:0070412 | R-SMAD binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU271061 | lncRNA | upstream | 336872 | 25516897 ~ 25548341 (+) | True | G199691 |
| TU271050 | lncRNA | upstream | 506388 | 25378579 ~ 25378825 (+) | True | G199684 |
| TU271049 | lncRNA | upstream | 507067 | 25377397 ~ 25378146 (+) | True | G199683 |
| TU271032 | lncRNA | upstream | 576266 | 25308642 ~ 25308947 (+) | True | G199669 |
| XR_002651734.1 | lncRNA | upstream | 584357 | 25297043 ~ 25300856 (+) | False | LOC103041709 |
| TU271134 | lncRNA | downstream | 36821 | 25924219 ~ 25925193 (+) | True | G199739 |
| TU271135 | lncRNA | downstream | 36821 | 25924219 ~ 25924536 (+) | False | G199739 |
| TU271136 | lncRNA | downstream | 37516 | 25924914 ~ 25925193 (+) | False | G199739 |
| TU271137 | lncRNA | downstream | 37516 | 25924914 ~ 25925353 (+) | False | G199739 |
| TU271139 | lncRNA | downstream | 42526 | 25929924 ~ 25930410 (+) | True | G199741 |
| XM_007258842.3 | mRNA | upstream | 4556 | 25876558 ~ 25880657 (+) | True | LOC103023870 |
| XM_007258840.3 | mRNA | upstream | 19939 | 25849528 ~ 25865274 (+) | True | LOC103023238 |
| XM_022683209.1 | mRNA | upstream | 36750 | 25624557 ~ 25848463 (+) | True | macf1 |
| XM_007258832.3 | mRNA | upstream | 265078 | 25618016 ~ 25620135 (+) | False | ndufs5 |
| XM_007258834.3 | mRNA | upstream | 265078 | 25618058 ~ 25620135 (+) | False | ndufs5 |
| XM_007258846.3 | mRNA | downstream | 19659 | 25907057 ~ 25922411 (+) | True | LOC103024803 |
| XM_007258845.3 | mRNA | downstream | 19659 | 25907057 ~ 25922411 (+) | False | LOC103024803 |
| XM_007258847.3 | mRNA | downstream | 27409 | 25914807 ~ 25922411 (+) | False | LOC103024803 |
| XM_007258848.3 | mRNA | downstream | 72054 | 25959452 ~ 25969352 (+) | False | sla |
| XM_022683212.1 | mRNA | downstream | 72055 | 25959453 ~ 25969352 (+) | False | sla |
| TU271111 | other | upstream | 265084 | 25617928 ~ 25620129 (+) | True | ndufs5 |
| TU271109 | other | upstream | 265084 | 25618034 ~ 25620129 (+) | False | ndufs5 |
| TU271110 | other | upstream | 265084 | 25618034 ~ 25620129 (+) | False | ndufs5 |
| TU270302 | other | upstream | 3662177 | 22219265 ~ 22223036 (+) | True | G199091 |
| XR_002651708.1 | other | upstream | 4502213 | 21358464 ~ 21383000 (+) | False | LOC103037930 |
| TU271396 | other | downstream | 723031 | 26610429 ~ 26613182 (+) | False | c23h18orf21 |
| TU271651 | other | downstream | 1396822 | 27284220 ~ 27284567 (+) | True | G200104 |
| trnai-uau_8 | other | downstream | 1602645 | 27490043 ~ 27490136 (+) | True | trnai-uau_8 |
| trnai-uau_9 | other | downstream | 1603539 | 27490937 ~ 27491030 (+) | True | trnai-uau_9 |
| TU271825 | other | downstream | 1927938 | 27815336 ~ 27818650 (+) | True | G200235 |
