RNA id: XM_007259793.3


Basic Information

Item Value
RNA id XM_007259793.3
length 1377
RNA type mRNA
GC content 0.43
exon number 5
gene id rbm48
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 26774891 ~ 26777801 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTCTGTGTTTAGTTCTGCGCTGTTGTCGGGGACGCTGGGTAATCATCATGGCGGCTCTGAAGCCGGGCTCTGTGTGGGACACACCGCAGGTCTACAAACACCACGAGCAGCAGAGCGCCTGTCTCACCCGCCCGAAGTACAGAGAAGGGAGGAGACTGAAGGCTGTGAAGGTTTATACGATTAACCTAGAGTCTCGGTTTCTGCTGGTGCAAGGAGTGCCTGCTGTTGGGGTAATGACTGAGCTGGTGCAGCTCTTTGCTCTCTATGGAGTGGTGGAAGAATACAGAGTACTGGATGAGTATCCTGCGGAACAGTTCACTGAAGTTTATCTTATCAAGTTCCAAAAGCTTACAAGTGCAAGGGCTgccaaaagaaaaacagatgaaaGAAGCTTCTATGGGGGTCTGCTTCATGTTTGCTATGCCCCTGAACATGAGACTGTGGAAGACACAAGAAGGAAGTTACAGGACAGGAGAAGATATGTTTACAGAAACACCCAAAGATTAGAAAGGGAACGTGAGCAAGAACAGGCTACAGAGAAAACAACTCCTGCCAGTTCAGAGACACCAGCTCCATCATCAGTGTATGAAGATAGGACATGTCCTCGAAGTTCCCAAGAGGACAATTGTAGTTCCAGCACATCTTCTAGCTTTCCATTATTGCCGCTACCACCTCATGAAAGAGTTCATCAGCACTATGTTTCATCTAAGGACTCATTTAAGTCTGTGAAGACTGTACATGAAGGCAGTGTACCTACAGAAGATAGAATGGGATCTTTACACAACTTCATCCCTAGTAACCGTGCCCCAGATGATTGCAAGCAGACCACACAGTGGTCAGACCTGCCTTCTGGTTCTACCTTTGGCAACGAAGAGAGAAGTATTATCAAAAAACCCAAACATCCGCCAAGCACTGCACCAAGGTTTATACCAAGGACTGCACAATTAGAAAACAGGAAAAGGAAAATGGAGGACAGTACAGACTTGTTAGGTGTGGCAGACAGAAATGCCCCCTTGTATGGACCCAAACTACCAGAACTACCAAAGATGGACATGGAAGATGCATCATTAAACAAAACGGCAAACATCATCAGGCAAACAATGTCAAAGgtCGCATCAGTTCCATCTGAAAAGAAGACAACAGCTGTAAAAGCACGGCGAAGAATATAATTTTCTCTTGTCTTCAGTGTGCAATTTTTATTGATGTACTGTAATAgtggtttattgtaaaatagcactgttcatttttctttatatgAGTGATTCACTTGTTACTGGAAAGCATGTTGCTCAAATTCCAGGGTCctctgaaaacaaacaaaaataaacatttatttattatattgtatttttctataaatgtcaaaataaaaaaaa

Function

GO: NA

KEGG:

id description
K24824 RBM48; RNA-binding protein 48

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271375 lncRNA upstream 249515 26525135 ~ 26525376 (+) True G199920
TU271362 lncRNA upstream 276786 26497451 ~ 26498105 (+) True G199910
TU271183 lncRNA upstream 289323 26485236 ~ 26485568 (+) True G199775
TU271175 lncRNA upstream 432627 26334716 ~ 26342264 (+) True G199767
TU271159 lncRNA upstream 641297 26123918 ~ 26133594 (+) True G199758
TU271443 lncRNA downstream 6216 26784017 ~ 26788851 (+) True G199965
TU271444 lncRNA downstream 6216 26784017 ~ 26788851 (+) False G199965
TU271458 lncRNA downstream 113828 26891629 ~ 26892574 (+) False cdk6
TU271593 lncRNA downstream 455680 27233481 ~ 27234147 (+) True G200051
TU271594 lncRNA downstream 455680 27233481 ~ 27234147 (+) False G200051
XM_007258858.3 mRNA upstream 27812 26627075 ~ 26747079 (+) False LOC103028188
XM_022683222.1 mRNA upstream 27812 26627075 ~ 26747079 (+) False LOC103028188
XM_022683221.1 mRNA upstream 27812 26627075 ~ 26747079 (+) False LOC103028188
XM_022683223.1 mRNA upstream 27812 26627075 ~ 26747079 (+) False LOC103028188
XM_007258857.3 mRNA upstream 27812 26655021 ~ 26747079 (+) True LOC103028188
XM_007259796.3 mRNA downstream 54153 26831954 ~ 26892623 (+) True cdk6
XM_007259797.3 mRNA downstream 116046 26893847 ~ 26899447 (+) True fam133b
XM_007259798.3 mRNA downstream 121867 26899668 ~ 26916183 (+) True hepacam2
XM_007259800.3 mRNA downstream 143946 26921747 ~ 27131972 (+) True vps50
XM_007259801.3 mRNA downstream 143946 26921747 ~ 27131967 (+) False vps50
TU271396 other upstream 161709 26610429 ~ 26613182 (+) False c23h18orf21
TU271111 other upstream 1154762 25617928 ~ 25620129 (+) True ndufs5
TU271109 other upstream 1154762 25618034 ~ 25620129 (+) False ndufs5
TU271110 other upstream 1154762 25618034 ~ 25620129 (+) False ndufs5
TU270302 other upstream 4551855 22219265 ~ 22223036 (+) True G199091
TU271651 other downstream 506419 27284220 ~ 27284567 (+) True G200104
trnai-uau_8 other downstream 712242 27490043 ~ 27490136 (+) True trnai-uau_8
trnai-uau_9 other downstream 713136 27490937 ~ 27491030 (+) True trnai-uau_9
TU271825 other downstream 1037535 27815336 ~ 27818650 (+) True G200235
TU271914 other downstream 1203712 27981513 ~ 27983350 (+) False LOC103032101

Expression Profile