RNA id: XM_007259801.3


Basic Information

Item Value
RNA id XM_007259801.3
length 4735
RNA type mRNA
GC content 0.45
exon number 28
gene id vps50
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 26921747 ~ 27131972 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTGAGCACAGAGAAACATGGCAGcggtctgagagagagaggtgtattGAGAGGCTGTGTGAAACATTAGTGCAGTAGGATCCGCGGAGCTGGATTTACCCCCGTGCTGAGCTGTAAGATGCAGAAGATCAAGTCTCTGATGTCCCGCCAGGGCTTGAAAAGCCCTCAGGAGAGTATGGCAGATATGAGCCCTGTAGAGAACTTCAGGATCCCCAGCAAGgaGGAGCTAAGGGAGCTTAGGGAGCAGCCCATCGATCCCCAGGCTGAGCAGGAGCTCATTGACAGCATAGAGGAGATTTACTTCTCCAACGACTCCTTTGACATGGTTCAGTATGAGCTTGAGAAACTCCCCCCAGAACTGAACCTGCAGGAACTGGAAGAGTACAGAGATAAGCTGAAACAGCAGCAAGCAGCCGTGTCGAAAAAAGTGGCAGACCTCATTCTAGAGAAGCAGCCATCCTATGTGAAGGAGCTGGAACGAGTTACGTCCCTCCAGACCAACCTGCAGCTGGCCGCAGTCATCTGCACCAACGCTAGGAGgcAGCTGAGCTCTGCTAAAGAGGGCTTCACAGAAGCTAGTCTAGGGCTCCTAGCCAACCAGAGACGGAGACAGCTGTTGACAGGATTGCTGAAGTCGTTAAGAACCATAAAGACTCTGCAAAGAACAGATGTTCGACTCAGTGAGATGCTGGAGGAGGAGGACTATCCAGGTGCGATCCAGTTGTGTTTGGAATGCCAGAAGGCTGCCAGCACTTTCAAGCACTACAGCTGCATCAGtgAGCTAAACTCAAAGCTGCAAGACACCCTGGAACAGATTGAGGAGCAACTGGATGTGGCTCTGTCCAAAACCTGCAAGCACTTTGATGTCTCGCACTACACCAAAGTTCAGCTTGCATACACACTCCTGGGCAAGACGCAGACTGCTATGGATCAGCTCCACATGCACTTTACCCAGGCCATTCACAACACAGTGTTCCAGGTGGTGCTGGGCTATGTGGAGCTGTGTGCTGGCAACGCAGATACCAAGTTCCAGAAGATGCAGTACAAAGATCTCTGCACGCACATCACTCCAGACAGCTACATCCCCTGCCTGACGGACCTCTGCAAGGCTCTGTGGGAGGTAATGCTCAGCTACTACCGGACCATGCAGTGGCACGAGGAGCATGACAAAGAGGAGGCGGCTGTCCCTGATGCAGATGGAACAAATAGTGAAAGCCCCGGCGATTCTACAGTGGGTCGCAGCTATGTGAAGAAGAAGCTGGAGCATGGCCTCACCCGCATTTGGCAGGACGTCCAGCTAAAAGTGAAAGCCTATTTACTCGGCACAGACATGTCCAACTTCAAGTACGACGACTTCATTGTGGTGCTGGATGTTATCAGCAGGCTAATGCAAGTGGGGGAAGAGTTCTGTGGCAGTAAGTCAGAGGTGCTGCAGGAGTCCATTAAGAGGCAGAGTGTGAATTACTTTAAGAACTATCACAGAACTCGCCTGGAGGAACTGAGGATGTTTCTGGAAAATGAAACGTGGGAGTTGTGCCCTGTGAAGTCCAACTTCAGCATTGCCCAGCTTCATGAGTTTAAGTTCATGGGACAATGCCGATCTCCATCAGTTTCCCCAAGCCGACAGCCGACTTCCAGCGAGCCTGTGGAGCTCTCCCTGTTTGAGCAGTTTGTTCAAGGAGGAAACCCTTTTGAGATGCAGATAGACAATAAAGAAGAGGAGACTGAAGATGTCTTGGCCTCCAATGGGtatGAGTCAGATGAGCTGGAGAAGAATGTATATCAGGACTATGACAGTGACAGTGATGTGGCGGAGGAGCTGAAGCAGGACTATGTGGATGAGCAGACCGGAGATGTTCCTGCTAAAAGcGTGTCCAGAGAGACGCTGCGCAGCAGAAAGAGGTCCGACTACAATCTGAACAAAGCCAACGCCCCCATTCTGACCAACACCACCCTCAACGTGATCCGGCTGGTTGGCAAGTACATGCAGATGATGAACATTCTAAAACCCATCGCCTTTGATGTCATCCACTGCGTTTCCCAGCTTTTCGACTATTACCTGTACGCAGTCTACACCTTCTTCGGCCGGAATGAAATGTATGAATCACCAGGGCTGGGTCTGATCAGCAGCAGACTGAGGACTACGCTCAACCGCATCCAAGAGAGCCTCATAGACATGGAGACAGGAGGGGAAAGTATAGGCCCCCATGGACCCCCAGAGGACAGGAAGGAGAAGGTACCCAGCCCTCACCTGAGCCAGCTGGTGGTGCTGACGGCCAGCGGGACACTCTACGGCCTGGCTGAGAGAGTGGTCGCCACAGAGTCGCTAGTGTTCCTGGCCGAGCAGTTTGAGCTCCTGCAGCCTCATCTGGACACCATGATGCCTCCAGCCAAGAAACCCTTCCTCCAGCAGTTCTACTCACAGACGGTGTCCACGGCCAGCGAGCTGCGCAAGCCCACTTACTGGATCGTGGCAGCCAAAGCCATCGATTATGAGcagatgctgctgctgatggcGGGAGTGAAATGGGACATTAAAGAGATAATGTCACAGCACAATGTCTATGTGGATGTCCTTTTAAAgGAGTTTGAGCAGTTTAATAAAAGGCTTGGAGACGTCTCCAGACAAGTGCGGATCCCTTTGCCGGTGTCCAACGTCCTCTGGGAGCACTGCATCCGACTGGCCAACAGAACGCTAGTAGAGGGCTATGCTAATGTGAAGAAGTGCAGTAACGAGGGACGAGCCCTGATGCAACTGGACTTCCAGCAGTTCCTCATGAAGCTGGAGAAACTGACTGACCTCAGGCCCATCCCAGATAAGGAGTTTGTGGAGACCTACATTAAAGCTTACTACCTGACTGAGAATGACATGGAGCAGTTCATCAAGAACCACAGGGAATATTCCATGAAGCAGCTGGCCAACCTGGTCAACGTGTGCCTCGGCTCCCACATCAACAAGAAGGCCAGGCAGAAACTCCTCGCAGCTATTGATGACATTGACCGACCAAAAAGATAAACAGCAGCCGGGCGCACGGGCAAAAAGTGGAATCACAGTGGGAATCATATACACGGTTATTAATGTGCAGAATATTCCAGCATGCAGGACTAGCATTTTATCTTCAACAAATGtttctgctgcttttttttgtgcacaactgttgttgtttttttttcttcttgttttgcGAATGTAACCAGCTTTCACTATTACACCACAGGACACTGGTCTATTAATAGCTCTTTCATAGCTGCACATACATCAGTTAACTGACTATCCAGATGAACGAGTGAAtgacacttattattattaaaatataaatgtaaaaaaaattataataaaaatgaaaaacaatcgGAGATGCTGATGGTTCAACAAGGATCTTTGTGAGCCTGAGAAACTCTATTTGTAGGTGAAGGTTTGATGTTTTCAAATGTTGCAtggacacttaaaaaaaaatgctgaaaattaTTCATTTCTATCCATTGGAGGGTGAAAAAACCTGGGATTAGGTCTGTCaggataattattttttatggaGGGTATTTTGTCCTAGAATaccaatatttaaatattgatagtcaatattataatagttttaggTCTATTGTATGCCATTTATAGTGActgaaatataagaaaaaatgcAGTTATACCCTATTAGTGAGCAATTGCCTTTGAATTATTAATAGTTtggaaaatgtatgttttttgccTATTAATATAGCCTGTTAGAAGTTTGCAGTATATATTCAAATGCTGTTTATTTTAGATAGAAAGACTGGCCATAAAAAAGGTTCAttctcatgaaaaaaaaacccacaatgtgcaatattgaggtctgaaaaaaCGATTGAGGTCATTTCCATATATTACACAATAAGTcattaatgtaattatcgtgacagacctACCTGGGATGCCGTCATGTGTGATCGTATGGTTcgtatgtttgtttgttgaaCCCTGTTACTCTTACTAATCTGTCTGCTCTGtgttaaaacatatttagtccttttgttttgttttgttttttaaaaaaataaatgattttattattatttatcccAATGATTCATATGTATGTAGTTGACTGATGTATCAGTCACAGTTTGGACAGttccttttttgtttgtattgtttttgtttgttcattttcacAAAATAATATCAATCTTAAAGTTTCGGCTGCTCTTCCTGTACTTGTATGTGTAATTCTACTCTATGAACATGATAACACTTGGCTGCAGGACGTCAGTCTGCACAGGGTGTCCGTGACGCAGACggtttatatactgtaaatgtgaGTGGCAAAACAGCATTCTATTTATTTCAGCAGCTACTGTAATTTTGTACACCCAGGTCGATCCAGCAAACTTGATCTGTAGATCTGTCATAAAAGTAGAATTATCTTGCTGTTACTCTGTAGTGGTCTGAAACAAAGTATTACAGCACTGTCACtcaaaaaaaaccttgtatttcCACAGTTTGTGGTCTAATTTGTATCTGACATGATGATAGAACCAATAGACGCTCTCTAAAATAACTTGatgtgaatctttttttttttttccatcgaCTTCCATTTAAAATTAAGCAAGTTgtttcttctcctgtaatgttttattttagagatacaaggtttttgtgtgacagaaATGATTAcatatgtattttaataattgattaacACAATGAAGAAAATAACGTCCACGAAAATAAATACACTAACATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271458 lncRNA upstream 29173 26891629 ~ 26892574 (+) False cdk6
TU271443 lncRNA upstream 132896 26784017 ~ 26788851 (+) True G199965
TU271444 lncRNA upstream 132896 26784017 ~ 26788851 (+) False G199965
TU271375 lncRNA upstream 396371 26525135 ~ 26525376 (+) True G199920
TU271362 lncRNA upstream 423642 26497451 ~ 26498105 (+) True G199910
TU271593 lncRNA downstream 101514 27233481 ~ 27234147 (+) True G200051
TU271594 lncRNA downstream 101514 27233481 ~ 27234147 (+) False G200051
TU271649 lncRNA downstream 147646 27279613 ~ 27279917 (+) True G200102
TU271657 lncRNA downstream 161712 27293679 ~ 27294340 (+) True G200110
TU271664 lncRNA downstream 172591 27304558 ~ 27305586 (+) False LOC103023645
XM_007259798.3 mRNA upstream 5564 26899668 ~ 26916183 (+) True hepacam2
XM_007259797.3 mRNA upstream 22300 26893847 ~ 26899447 (+) True fam133b
XM_007259796.3 mRNA upstream 29124 26831954 ~ 26892623 (+) True cdk6
XM_007259793.3 mRNA upstream 143946 26774891 ~ 26777801 (+) True rbm48
XM_007258862.3 mRNA upstream 174668 26715251 ~ 26747079 (+) False LOC103028188
XM_007259805.3 mRNA downstream 172554 27304521 ~ 27305553 (+) True LOC103023645
XM_007259806.2 mRNA downstream 175499 27307466 ~ 27331589 (+) True LOC103023978
XM_022683235.1 mRNA downstream 285606 27417573 ~ 27443050 (+) True col1a2
XM_022683236.1 mRNA downstream 285606 27417573 ~ 27443050 (+) False col1a2
XM_007259808.3 mRNA downstream 319042 27451009 ~ 27466504 (+) True casd1
TU271396 other upstream 308565 26610429 ~ 26613182 (+) False c23h18orf21
TU271111 other upstream 1301618 25617928 ~ 25620129 (+) True ndufs5
TU271109 other upstream 1301618 25618034 ~ 25620129 (+) False ndufs5
TU271110 other upstream 1301618 25618034 ~ 25620129 (+) False ndufs5
TU270302 other upstream 4698711 22219265 ~ 22223036 (+) True G199091
TU271651 other downstream 152253 27284220 ~ 27284567 (+) True G200104
trnai-uau_8 other downstream 358076 27490043 ~ 27490136 (+) True trnai-uau_8
trnai-uau_9 other downstream 358970 27490937 ~ 27491030 (+) True trnai-uau_9
TU271825 other downstream 683369 27815336 ~ 27818650 (+) True G200235
TU271914 other downstream 849546 27981513 ~ 27983350 (+) False LOC103032101

Expression Profile