RNA id: XM_007259806.2


Basic Information

Item Value
RNA id XM_007259806.2
length 2510
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC103023978
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27307466 ~ 27331589 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

catgcgcactgtggaGCAGCAGTGCACTACGAGCAGTGGTGCTGAGTGATCATGGCTGTGTGTGTAAGATCTCTGCATTATTCGGGTTTTAGCCGCCAGATCCTGAAGACCACTGCAGTGTTCAGTAAACGGCACATATCGGAGCGCGTGTCCTCTAAATCTGAGCCCCGCTCCGCCCCGCAGACTGCAGATCATGTCCTCTACACCCAGGAACACTTTGCCCTAAAGGACTCTCTGAGGAAGATCATTGATCAGGAGATCAACCCCTATGTGGACGAATGGGAGGAGAAGGGACAGTTTCCGGCTCACAGGATCTTTAAGATTCTCGGAAGTGCTGGCTTTTTGGGAGTCAACAAACCTGTGGAGTATGGAGGTTTGGGGCTGGACTTCAGCTACAGCGTGGCTGTGGCAGAGGAGCTGGGGAGCATCAACTGTGGAGGAATTCCCATGGCCATCGGGGTCCAGAGTGATATGGCTACCCCTGCTCTGGCCCGGTTTGGATCCGCAGAGCTGAAGAAAGAGTTCTTGCTTCCCTCCATAATGGGAGACAAAGTGGCTTGCCTGGGAGTGAGTGAAGTAGGCGCTGGTTCTGATGTGGCGAGCATTAAGACTAAGGCTGTGCGTAAAGGAGATGAGTTTGTCATTAACGGTGGAAAGATGTGGACCACCACTGGATCACAAGCAGACTGGATGTGTCTCCTGGCAAACACGAGCGATGGGCCTCCACATAAGAACAAATCCCTCATCTGCTTACCCATGGATCTACCTGGAATTCACATCGCCCGTAAGATTAATAAGCTGGGCATGTGGTCTTCAGATACAGCAGAGGTGTTCTTTGACGACGTCCGGGTTCCCTGTAAAAACGTCATTGGGGAAGAGGGAATGGGATTCACATACCAAATGCTCCAGTTCCAGGAAGAGCGCATGTGGGGAGTTGCAAATATTCTGACCACAATGGAGAAAATCATTCAGGAGACGATTAACTACACCCGACAGAGAAAGATCTTCCACCAGCCAGTGCTGCACCACCAGGTAGTGCATTTCAGGCTGGCAGAACTGCAGACTGAGATCGAGCTACTGCGTTCCCTCCTATACCGATGCACAGCTCTCTATATCAAGGGCAATGATGTGACAAAGTTGGCGTCCATGGCAAAGCTGAAGGGAGGTCGTCTGGCTCGGGAACTGGGGGACGGCTGCCTGCAGTACTGGGGAGGCATGGGCTTCACCAGTGATGTCCTGGTCAGCAGGTTCTATAGGGATTCCAGACTAATGTCGATTGGGGCAGGAGCAGATGAGGTCATGCTCTCAATCATCTGCAAGTACATGGACACCCTACCCAAGAAATAACAGCACTGAAGGAGCTGTGTATGCTGATTTATAACAAAGTGCACTTAACATAGGAAAAAGCTTGGAAATTTCAGAAGTTTCAGTATTGTTTTAAACATGCCTCTCCAACAGGGGCTACATTCAGgttcacattaccagactgAAATGATGCAAAAACCAAACTGAAGTTTTTGCCTTAATGTTACACAAATCAGATAATTTTTGAGCTGTGTGGACATGTTCGATCCAGTCTTTTCCAATTAGATTTGTTCACATGTGTGATGCTAGATTGGAAGTGTATCTGATTCGTGGGCATGTGtcataaattaacatttatattgGATTATAAGTGTTTAATACTGTTGGTTTTTGTCATCATCCGGCAATGTAGTAAAACTGCATAAATTTGCACAATATCAGTGTGCACGTGtggtgtttcagggacagatagGTTCACATTAAAGACAGAAACCAGGCATTTTTGTACTTATCAATATTAATTGTCCACGTAGACAAATATGATCTGAGCAAAAGtatcaaaaatattaattattgaaTGGTGCTTGAAATGTGAATGACCAGAATTCAGAATGGGAGACGAAGGGGACATAAAAAGAGGATTTCAATTAAAAAGTGTTCAGCTTAAGTTTAATGCCCATAAATCTATTGAACTTACTATAAGCTACAATCAGTTGATCTAAAACTGTAGTGTATGAACTTTTATATTTGTGGGTGTCTACATAGCTTTTAGCTTTGCTCACAAGCACTCTAAATTAATAAGGTATAGATGTTCTACTTTAAAACATAAATTCTGAACATGCTGATGTAAACACTTGTGTCCACTCTAAACCTCATTCATCACTCTGAGGGATAATATAAGCAACTCCACTACTTTAGCCAATTAATGGAATAATCCTTTTACTGGCATTGTGGATGCCTCCAAGGGGCAGCAAGGAAATatggacagttcttgttaaaacacatattaaatttgctttgatttttaataaataaaaaaaaaacatagatttaTCATGTTGCCTTAACAAAAGGTATTTCTCTACTTGATAAGCttgtaaatatactgattattgTAGTTTTCTTGTACTATCTGTAACTGAATGTATGATCTCACTTATTTTAcaagaaaaggaaaataattaataaacaaccATACACAAACA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K11731 atuD; citronellyl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271664 lncRNA upstream 1880 27304558 ~ 27305586 (+) False LOC103023645
TU271657 lncRNA upstream 13126 27293679 ~ 27294340 (+) True G200110
TU271649 lncRNA upstream 27549 27279613 ~ 27279917 (+) True G200102
TU271593 lncRNA upstream 73319 27233481 ~ 27234147 (+) True G200051
TU271594 lncRNA upstream 73319 27233481 ~ 27234147 (+) False G200051
TU271680 lncRNA downstream 425 27332014 ~ 27335222 (+) True G200124
TU271683 lncRNA downstream 25131 27356720 ~ 27356941 (+) True G200125
TU271708 lncRNA downstream 113305 27444894 ~ 27445449 (+) True G200143
TU271719 lncRNA downstream 135771 27467360 ~ 27468802 (+) True G200148
TU271737 lncRNA downstream 180399 27511988 ~ 27515678 (+) True G200158
XM_007259805.3 mRNA upstream 1913 27304521 ~ 27305553 (+) True LOC103023645
XM_007259800.3 mRNA upstream 175494 26921747 ~ 27131972 (+) True vps50
XM_007259801.3 mRNA upstream 175499 26921747 ~ 27131967 (+) False vps50
XM_007259798.3 mRNA upstream 391283 26899668 ~ 26916183 (+) True hepacam2
XM_007259797.3 mRNA upstream 408019 26893847 ~ 26899447 (+) True fam133b
XM_022683235.1 mRNA downstream 85984 27417573 ~ 27443050 (+) True col1a2
XM_022683236.1 mRNA downstream 85984 27417573 ~ 27443050 (+) False col1a2
XM_007259808.3 mRNA downstream 119420 27451009 ~ 27466504 (+) True casd1
XM_022683237.1 mRNA downstream 147147 27478736 ~ 27588721 (+) True ppp1r9a
XM_007259814.3 mRNA downstream 163686 27495275 ~ 27588721 (+) False ppp1r9a
TU271651 other upstream 22899 27284220 ~ 27284567 (+) True G200104
TU271396 other upstream 694284 26610429 ~ 26613182 (+) False c23h18orf21
TU271111 other upstream 1687337 25617928 ~ 25620129 (+) True ndufs5
trnai-uau_8 other downstream 158454 27490043 ~ 27490136 (+) True trnai-uau_8
trnai-uau_9 other downstream 159348 27490937 ~ 27491030 (+) True trnai-uau_9
TU271825 other downstream 483747 27815336 ~ 27818650 (+) True G200235
TU271914 other downstream 649924 27981513 ~ 27983350 (+) False LOC103032101
TU271959 other downstream 861985 28193574 ~ 28196198 (+) True G200341

Expression Profile