RNA id: XM_007259808.3


Basic Information

Item Value
RNA id XM_007259808.3
length 4507
RNA type mRNA
GC content 0.42
exon number 18
gene id casd1
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27451009 ~ 27466504 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCTCCGCGGAGTCCCCGCCAGCTCCGCCGCAGCACGTCTATCTGCTTGTTGTCATGGAGGAGCCAAGATGGCGGTCCTGGCCTATAGCCTAGGCAAACGGGAGATAAATCACTATTTCAGCATCAAAAATGCCAAATTACTCTCTGTGCTGGCTGTACTCGTCCTCACGGCTGTCCACTCCGCCTCTCGGTACTATGGAGGCAGGGACACCTGTGACTGGCTCCTATCCAGCGGACGTTTCTTAGGGGACAGTGTGTGGCAGCCATATGGCTGCATGATGCACAAATACAAAAGCATagAAGCAAAAACATGCCTCAACAATAAACGAATAGCATTTATTGGGGACTCCAGAATCCGGCAGCTCTTCTATTCTTTCATCAAAATTATCAACCCTGATATAAGAGAAGATGGGAACAAGCATGAAAACATTCCCTTTACAGATAGAGAGTCCTTGCTGAATGTGGACTTCTTGTGGTATGCAGAAGTGAATAATTCCATGAAAGAGCAGGTGACAGCTTGGACGGAGAGGCCTGCTACCAAACCAGATGTCATTGTCATCGGTGCTGCCACTTGGTCCATCAAACTGCACAGCGGCAGCAGTGAAACACTCCTTCAGTACAAAGCAAACCTCACATCTATAGCAGGACCACTGGAGAAACTAACTGAGCATAGTGAAGTCTATTGGGTTTTACAagATCCTGTGTATGAAGAGATTCTGAGTGAGAATCGTAAGATGATCACAAACGAGCAGATAgacctgtataatgctgcagcCGTCAGTGCTCTTAACAACAGCAAGAGGAACGCTAGGGGCAGGGTGAAGTTCCTAGAGGCCTCTCGACACGCTGCCATGGAAACCATCACTCTGTCACTGGATGGGCTGCACCTTCCCGAGAGCACGAGGAATGTGGGTGCCATGGTCCTGATGAACTCCATATGCAATAAAATCCTTAAGCCCATTGATGGCTCCTGCTGTCAGAATGTTCCTTCACTGAGTGTTCTACAGAAACTGGCTTCTGGACTCTTCTTAGTAGCTGGTGTCTGCTTGCTGGTCCTTCATGCGCTGGGCTACAGCAGACATACTAAGAGCAAGCCTGTATCTGATGTGGAGAGTGGCGAGGAGAAAAAGCCTCTCACTGCTGCAGTGCCGCTCAACCTGAAGGCAGCTACACAGTCAGTCTGCAAGATGGGTCTGATCATGCTCTACTTCTATCTGTGTGACCGAGCAGACATTTTTATGAAAGAGCAGAAGttctacacacactccaccttcTTCATTCCACTCATCTACATATTCGTCTTGGGGATCTTCTACAGTGAGAACAGCAAAGAGACCAAACTGCTGAACAGGGAGCAGACAGATGAATGGAAGGGCTGGATGCAGCTGGTCATCCTCATCTATCATATATCTGGAGCCAGTGCTTTTATACCTGTCTACATGCATATACGGGTCCTAGTGGCAGCTTATCTCTTCCAGACAGGATATGGCCACTTCTCCTTCTTCTGGTTAAAAGGGGACTTTGGACTATACAGAGTGTGCCAGGTTCTCTTCAGACTCAATTTCCTAGTGGTGGTGCTCTGCCTCGTCATGGACAGGCCATACCAGTTCTACTACTTTGTGCCTCTGGTTACGTTTTGGTTTGTGGTCATCTACGCCATAATGGCCATGTGGCCACAGATACTGCAGATGCAAGCTAATGGTAGTGGTTTCTGGCACCTGGCACttttattaaaactattatCGTTACTTATTTTCATTTGCTCCTTTGCATACTCCCAGGGATTCTTTGAGAGTATTTTCTCCACGTGGCCTATTTCAAAGCTCTTTGAGCTGCAAGGAAGCATCCATGAGTGGTGGTTCAGGTGGAAGCTTGATAGATTTgcTGTGATCAATGGGATGCTGTTTGCCTTCATTTACCTAGCATTGCAGAAATGCCAGATTCTGTCAGAGGGTAAAGGAGAGCCCCTGTTCTCTAACAGGATTTCCAATTGCCTGATCCTCATATCAGTCTTCTCTTTTATAACATACTCTGTATGGGCCAGTAGCTGTAAAAATAAGACTGAATGCAATGAGATGCATCCTTACATTTCAGTAGTGCAGATTCTGTCATTTGTTCTAATCAGGAACATTCCTGGTTATGCCCGTTCtttgtatagctcttttttcgCGTGGTTTGGAAAAATCTCGCTAGAGCTCTTTATCTGTCAGTACCACATATGGCTGGCGGCAGACACCAAGGGCATCCTGGTCCTGATTCCTGGGTACCCTTCTCtcaacatcatcatcagcaccttcatctttgtgtgtgtggctcaTGAAATCTCTCAAATCACCAATGACCTGGCCCAGGTAGCCATTCCTAAAGACAGTACAGCTCTGATGAAGAGGCTATTGGCTGCAGGGGTTTTCCTGGGGCTTGTGCTAGTTCTGTCTGTGAATGGGCAAGCTGGCTACTGAATGAGCTGGGGGACCACCGCCTACCTAGCTGCATGAAAGAACAAGCCGTGAATGAGCTGAGTAACTGGAGGAGGACACGTCAGGAATCTTTGAGCTTCAGGAATCTTCCAGGACTCTTTCTTCAGGCTTGTTGAGGGCAGTATGATGTAATAATGAATTCACACTCCGAGAGAGTTAACAGTTGGAGGAATGGCCCAAAGCAGAGGCCAGGGGCACAATGCAGTAAGGACATATATATAAAACGTTATAAAACTTTGTTTACAATGAACAGTTTTATATaggacgtgtgtgtgtggtggccATGAAGACATTTACCACATTGTGTCACGCTATACATACTGACTGAATGTACTGTACTGACATACATTTtgactgaaaaagaaaaaactaagacTGACGCtgacatttataaaatgtaagcCACCTGTTCTCCGTCCATGTCTTGTAGTActtgtttgcagtgtgtgtacagtatttaatgatttaaattatgtttactTTGTACATGGATGTATTTGTGTCACTTTCACCTTGTGtcttgatttatttttcttttttttattatttctttttttgtatccaTGACTGATGTAACTGAAATATGAACAgactttcatttttcatcttCTGCAGTAGACAATTCAGCATAAGCCAACTGCTTTGGCAACCTCCAGTTAACTCACTAACCAgcttattttagtaaaaaaaataaccactATAGTAAATGCTTTTTAGTGtttgtaacatttaataaaGGCTTTCAACGGTCCTCAATTCTCCAGAACTATCAACAAATACAGGACACTTTTATAGCTGTCAAAACAAGGACAGTGAAGAGGTCACTGCATGAACTTCTGGAAGACTGCATATGTATCTCAAGACCAGAAGAACAGTCTTTATTCTTTAGATGCTATTTATTGTAACACTCCAAAACTGAAAATTCTATAACCAAGAAACTTGGATCTACTGCTGTGCTCTAACCCCAGTGCTATGAAAGTTGTGAAGGTTGTCGTATAATGCAAGGAAAGGTTTCTGTTGATGATGCCTTTTATTTCCTTAAGAAAGGTCAAAAGGTTTTAAGCTTGACGGTTGCTTTGCTGATACTGATGTGTagcttttttgttaaaaaaaaacttttgtatgTTTTGCAGCTTTTAGCTTTCAGGGCTCAGTTTATCAAAATGCTCTGTTGTATTACGAACATCCTAACTGTGATAAACAGTTGTaatgatgagaaaaaaaaaatccagcttaGTATAACAAGCTGAACAAAGCAGTCTAACATTGTACATATCTTTATTTGCTGTCTGTTGTTGCATTGTGCAAGATAAGTTTAAACCTTTCTGCTTTAAAGCTGCACTgaatttatttctgtaaaaatatGCCTCCCCCagtaaggtctctgtaaaaacAGCTTTTGTGAGGTCTATAATGTGTTGTATACATTTGTATTTTTGAACCCTGCACAAGAGCAGCTAGCTGGTCATCCAGGAAAAACACATTATGTTGGTAGGCTAGCTCGTTAACTAGCTCATAACCAGCATGGCGTGTGGTTTCTCTGGATGACCAACTGGATTTTTTTAGTTGGGTAAACTTTGCTAAAAGCAAACATGATCTTCTGTAGAAATAAGTGTTTGATTTTCTAAAGTAGATGATTTTGCTTAATGCAAACGTCAATTTTAATTAGATGCAATGAATTCAATCCACTTCACTGCTATACTGAACCAACATTCATGTATCCTTCTGTAAatgtttggattttatttttttaagattttctgtatgtgtgtatgaatcAATTCTTTTTGTATAGTTTATttggtcttattttaaaaaaataagaagaaagaaaatcatACCCTCATGCCTCGACATAGAcccaatgtaaatatatttgttttgtccTGAAATGTGAAACCTATCTTGTCTGTCAATTAAGAAATGAGTTCTCTTGGTTGTGCAGTCATTAttggtataaaaaaaagcaactcCCTGAACTTATACAGaagaactgtatttttattagcaGGTTTGTATTATTTCCAGAC

Function

GO: NA

KEGG:

id description
K03377 CASD1; N-acetylneuraminate 9-O-acetyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271708 lncRNA upstream 5560 27444894 ~ 27445449 (+) True G200143
TU271683 lncRNA upstream 94068 27356720 ~ 27356941 (+) True G200125
TU271680 lncRNA upstream 115787 27332014 ~ 27335222 (+) True G200124
TU271664 lncRNA upstream 145423 27304558 ~ 27305586 (+) False LOC103023645
TU271657 lncRNA upstream 156669 27293679 ~ 27294340 (+) True G200110
TU271719 lncRNA downstream 856 27467360 ~ 27468802 (+) True G200148
TU271737 lncRNA downstream 45484 27511988 ~ 27515678 (+) True G200158
TU271738 lncRNA downstream 45484 27511988 ~ 27515678 (+) False G200158
TU271747 lncRNA downstream 139969 27606473 ~ 27609051 (+) True G200166
TU271804 lncRNA downstream 264366 27730870 ~ 27740109 (+) False dync1i1
XM_022683235.1 mRNA upstream 7959 27417573 ~ 27443050 (+) True col1a2
XM_022683236.1 mRNA upstream 7959 27417573 ~ 27443050 (+) False col1a2
XM_007259806.2 mRNA upstream 119420 27307466 ~ 27331589 (+) True LOC103023978
XM_007259805.3 mRNA upstream 145456 27304521 ~ 27305553 (+) True LOC103023645
XM_007259800.3 mRNA upstream 319037 26921747 ~ 27131972 (+) True vps50
XM_022683237.1 mRNA downstream 12232 27478736 ~ 27588721 (+) True ppp1r9a
XM_007259814.3 mRNA downstream 28771 27495275 ~ 27588721 (+) False ppp1r9a
XM_007259815.3 mRNA downstream 28771 27495275 ~ 27588721 (+) False ppp1r9a
XM_007259816.3 mRNA downstream 28771 27495275 ~ 27588721 (+) False ppp1r9a
XM_022683238.1 mRNA downstream 28771 27495275 ~ 27588721 (+) False ppp1r9a
TU271651 other upstream 166442 27284220 ~ 27284567 (+) True G200104
TU271396 other upstream 837827 26610429 ~ 26613182 (+) False c23h18orf21
TU271111 other upstream 1830880 25617928 ~ 25620129 (+) True ndufs5
trnai-uau_8 other downstream 23539 27490043 ~ 27490136 (+) True trnai-uau_8
trnai-uau_9 other downstream 24433 27490937 ~ 27491030 (+) True trnai-uau_9
TU271825 other downstream 348832 27815336 ~ 27818650 (+) True G200235
TU271914 other downstream 515009 27981513 ~ 27983350 (+) False LOC103032101
TU271959 other downstream 727070 28193574 ~ 28196198 (+) True G200341

Expression Profile