RNA id: XM_022683238.1


Basic Information

Item Value
RNA id XM_022683238.1
length 7335
RNA type mRNA
GC content 0.46
exon number 20
gene id ppp1r9a
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27478736 ~ 27588721 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagagcgagcgtgtgtgtgtgtgtgtggagcccGGCTTGTGTGTCAGATTGTTCAATGGTATGCTGAAGGACTCGATGGATGTCGGTGGCGAGGTCCCAGTGGTCTGAATGGAAATGATGATGTTTATCCTGCTTTGTAGGGATGCGAGCCCACCATCAGCACCACTGCTGCTCCTCTGACCGCTCCAGgATATTATGACATCAGCCAGGTCCACAATGTGATACTGAATCACATAAGAAGGAAGATGATTTAGGAATGCTACTCTACATTTGAAAGCAGCTGTTCCCTCCGTTGTTGAGGCTCCGTCAAAGATGCTGAAGACGGAGGCCTCGACCGAGAGGACTAACCTGAGGAGTGCCTCTCCGCACAGGAACGCCTACAGAGCAGAGTTCCAGGCTTTGAAGAAGGCTTTTGACCAGCCCAGGCAGGATGGTGACCCCAAGATCAAGGACCCAGAGCGTGTCCGGCAGCCCAGGGGTCGGCAGTATGGTGCCCACGTCAGTCGAATCAAGGACATGTTCATGCAAATGGGCACAGAGACCCCTGGGTCTGGCAAGACACGAACAAGGGACGAGAGTTCTCCGCAGAAACTCACCAAGCCAACAAACTTCGTCAACAAAGCAGATGGTTCGGTAATCAAACTTCAGCATGCTGATAGAAGCAGCAGTGGCCACATCTCAAAGTTCTCTGAGACCAGGAAGCTCTTCGAGCAGAGCTCTAGGGATACATCCCAGTCTCCTGTGTATTCCTGTGGCAGAGATAAGAGGGGTTCGCATGAGCATCTGGATGACTGGAGGGGGGCACGGTCCAACAGGGGTAGCACAGACTCTTTGGACAGTCTTTGCTCACGAACGGAGGCTTCCTCCCCCACCGTCAGCCAGCTTAGTGCCGTGTTTGAGAATTTAGACCAGCAAGGCACTGGTCCTGCTCCCAGGAGAGGCCATGGAGGTGGACGGGCTCTTTACTCTCCAGACAGCTCGCTTAGACATGGGGAAGCCAGTGAGGATGACACCAGTGCCCGCCAGTCTCCATCAAGGGGTGTCTATAGGACCCGTGTTGGAAGCAAGCAAACCCTTCCAGTTTCTTACTCATCGGAAGATCTTCTCAGCCCTAGCCCTTTGTCAGAGATGGCAGAACAGCCAAAGGCAGATCAGGAccaggagaaggagaagaagctcCAGGAAAGGACTGTTGCAGAGACCAATCATGGGGATGCAGAAAGTCTGGAAACTCTGGATGGATCCATTGAGCCAAAGCACACAGAAGATGCTGCTGGAGTTTGCACCAACTCTGCTCATGCCAGTGATAGTACAATCTGTGACAAACCACAGGAGGATACGCCTGACTCTGCAGCTGTCATGTCTCGTAAGGAAGCAGAGGAGACAGTCAGAGACAAATGTGGCCGGAGTGCAGAGGATCAAATTGGGGAGCCCAATGAGGAATACTGTGGCAACGAGAGGGTTATTTTCAATGCAGATGGGGATGCTTGCTACCAGGGCTGGGGAGAGAGCTGCACCGACTTAGAGGATGATTTGTATGGAGATGATGACGCTAACTATGACCCTGGATCAGAGCTCACTGAAGTTCCTGGTCTTCCAGAGGAGTCCAAGGAGGATATTCCTCAACGGCGGAAAATACGATTCAGCACTGCCCCAATAACAGTTTTTAATACCTACTCAAACGAGGATTATGATCGCAGAAACGAGGAGGTGGATCCAGTGGCGTCCTCAGCGGAGTACGAACTGGAGAAGAGGGTGGAGAAACTGGAACTTTTCCCAGTGGAGCTGGAAAAGGATGACGATGGCCTGGGCATCAGTATTATCGGAATGGGAGTCGGTGCAGATGCCGGCTTGGAGAAGCTGGGGATCTTTGTTAAGACTGTTATCGAAGGTGGAGCGGCGGAGAGAGATGCAAGGATTGAGGTGAACGATCAGATCGTGGAGGTGGATGGCACCAGCCTGGTGGGCGTGACCCAGAGCTTTGCTGCCTCTGTGCTGAGGAACACACAGGGCGTGGTCAAGTTCGTGATTGGCCGGGAGCGTCCGGGGCAGGAGAGTGAGGTGGCTCAGCTGATCAGTCAGACTCTGGAGCAGGAGAAGCGGCAGAGAGAGATGATGGAGCAGCAGTACGCTCAGTACGATGCTGACGACGACGAGACGGGAGAGTACGCcacagatgaggaggaggaggcggagccGGCCGCGGACAGAGATGTGACCATTGAGGTTTTCGATTTGCCCGAAAACGAGGACATCATCTCACCGTCTGAGCTGGACGCCACCAAGCTCTACCAGAAGTTCAGAGAGCTACAGATCAAGCACAGTGTTACTGAGGCGGAGATCCAGAAACTCAAGAACAAGCTGGCTGCAGTGGAGAAGGAGAAGGCACGCTGGGAGCGTGAAAAGAGTCAGCTTAAACAGAGCATTGAGGATAATAAGGAGAGGATGCTGAAACTGGAGAGTTACTGGATCGAGGCTCAGACACTCTGCCATACAGTAAACGAGCACCTGAAGGAGGCGCAGAATCAGTACCAGGCCCTGGAGAAGAAGTATAACAAGGCCAAGAAACTTATCAAGGACTTCCAGCAGAAGGAGGCAGAGTTTGCTCAGAGGGAGGAAGCGGAGAAGAAGAAACTGGAGGAAGTGGAGAAGGCTCATCTAGCTGAGATACAGGGGCTGCAAGTGAGGATTGCAACACTGGAATCTGAGCTGATGCAGCTGATGAAACAAAATGGCATCCAggtaaacaacaacaacaacagcgcAGAGAGCCGAGCGCAGCTGAATGAGAGGCTGGCTGCGCTCCAGTGTCCTGGGATCCGCATCCCTGGAGGAGTGATGGGTCAGAGCCAGCTGTCTGGAGCCAGTGGAGCAGACAGAGCGTATGAAAGAGCGCGAGATGGAAGCAGCTCAACTGATTGTGTGGAGAGCCTTAAACCACGGGGGTCTCCTAATGTCTCTTCTGGTGGGGCGGACTCCAGGAGGCCCGGCAGTGCAGAGGCGTCACTCGGACACCAGCAGCTTCGGCACGGGCCTGGGAGTGAGGGTTCTGCAGAGGTGCTGAGCCCTTCAGCAGCTCCAGATGAGAAGTCCAGTAAAAGGCTGCCTGACCTGAGCTCTACAGAACCATCTGCAGAGAACAGCCCAGAGAAACACAAGAGCAAGAGGTCTTTTTCCCGGCCGCACTTCTTCTCCTATTCATATTACTTGggtcCCACTTTAAACGATGACCTCAGTAtcagcagctccagctcagcgGAGATCACTGGGGTGGTCACGGAGCCCAAGCTGTCAGGCCGTTCTCATACACTAATGCTGTCTTCAGACGAGAGTCTGGATATGGTTGATGATGAGATCCTGGATGAAGGGCAACCTCCAAAGCAACACCACTGGCAGAACCGCAGTGTACTGGAGTGGTCCTGCCAGCAAGTGTCCTGCTGGCTTATGGGTCTTAACCTGGAACAGTACATTCCTCAGTTTACCGCCAAGAATGTGGACGGAGAACAGCTCCTGCAGCTTGACAGCACTACACTCAaaGCTCTTGGTGTAGCTTCCTCTCAGGACCGAGCTCTGATTAAAAAGAAGCTGAAAGACCTGAAGATCCTGATGGAGAAGGCCCATAGGAGCCGGGAGAAGCTGGAGAAACAGCACGAGAAGGTTCGCAAGAAGGAACTCCAGCAGCTGCAGAAAGAAGGACGCAAAAGCAGCAAGTCATCCTCAGAGCCAGGAGAGGGTCCTGCAGAGTGACAGACCGCCCTGCTGAACCATCAACCTGTTTCTACACTGGAAAGCGTTCTAATGAGATGAGTCTAGCATACCGTTGATTAATGGAACATTAATGAAACTTAAGCCTGTGGTCTCCCTTCTGTGGACACCACAGTCCCACTGTAAGAGGAACTGCTACTGAACTGCCActgaaactgaaagtgaaatcTGTCAAGTGAACAGTCCTGAAGATCTCCTGAAGTCTGTGTGGAAGGATTTTGTTTACGTTTAATTGTACAGTCAATTCAGGACATTTTTTGGGGTTCGTTTATTCTTTTTTGGACACTCTCAGAATATTCTCAGATgcttgtgtgtttctgtttgatCGTctgataaatgtttatttattttatcttttatctctTTATGCCCAGAGCATATCAGCTTGAAACCAATCTACAGCTTTCGACATTTCAAGCACCTTTAGACATAAagacagtgtaaatatatatataaatatatatatatatataaataaatatgtctaATGTGCCATTTTCTATGAAGACCAAGATGTGCAGTTGACCCTGTGTAGAAGAAGGTATCCTCAAAGCTCTCGGCTTTAAGCACATGTTGCTGCCACAGTGTTcgttgtgtgtgcatttgcgtCGTCCAACAGCTTGAGTGTGCTGCTCTTAGGATCCACTACAGTCGGACACACTGGAATACTGAATCTTACTGTGAGAAGAAAGCCATTCCGAGTCTCCAAACATCCCGGACCTCGCACTAAACCCATCCCACCTTAGTGGATGTTGTTGATGTTTAGCCTATCTGCTAAATGACCACACATGGCTAGAATCTACTGTATAGTGTCCTCCTATATCCTTCAGTGACCTCTCAGTGTTCAAGTGAAGTAGATCTTTACTACACGTGTTGTTCTCAGAGCTTGAAACCTCCTACATGGAAAGAAACCACTAGGAATATAATCACAGAGAAGCCTGAAAGGGATGCTGTGCAGCCTCACACAGCGTCTGAAGAAAAAGCACTCCAAATAGAGGATCATTGGGAAGTCCAAAAGCTGaagctccgcctcctcctcctgctgctgctccttcttcttcttgatCACTGCTATCTGCTTTTAGTCCTCTTCATTTCACTGAACTAGATCCTCACTTAGACCCAAGTGCTGCCTTTTGAGCTGCtgtatagattttatataaCATACTGGATACTCTGCGTGTGCCCTGATTTGTCTGACATCCAAACTGGTTGGTGAGTAGTTGACAAAcctgcacttaaaatctcatCTCATCCataattttacaaaatgtaGCTCTAATGTTACTTTGTTAGTAAGgagatatttgatattttaccCCTGTCTGACTGCCCTGTAGACCCACTGTACCCTGTACGCTTCTGTTTGTCGGCTTTAGCTTATTTCCTTAGGCTGATTATGCTGATGCTACATTAAGAATTCACTAAAAgtgttcacaaaaaaaagagttttataAGATTTCAATTCAGTATATAACACGATGAGCGAGTATTACCTCCATATTCTGAATCTATTGTGGATTTATTTTCCAATGTACATAATTCAATATACAAGATATTTCTATTAAATGTCTTATTATACCTGAACTTTAATGGCTCGTTTCAGATTCAGCTGGTAGCTTAGTAATTCATCCTAcgctttgtttctttttattgttgtaaTTGTACGATTTTACACAGTTGGTATTACTATTTctacatttttgtaatgttttccCCTTTTCCCTAAGGATCACCTCCTCTTTGTGAACATTGGAATTTTGTGTTCTCCTGTAATACACTGTCATATCAGAATATTGTGAACAACTACGTACTTAATAGTGGAAATAACAACCAGTGGCTCAAATGACACTAGAGAAAGGTGACTTGTGCTTTGTTGGGAGGCACTCAATGTGGGAGAAATCCAAGCTTTAGAACATTCTATTACGTTGGATGTTTCATGAAGTGGTTTCTTCATGACGCTACCACCACATACCCTATCATCACACCCTTCTGGAGAGCAATTCAACTGAATCCCAGACAACATGTCCATCTGGGGCCTGAATGGTTGCCCATGGATTCCATGTTGGCCCTACATTTGGATGTCAGAGATGGGTTCCACCAGGGACGttttgtaaatgaatgagttaaCCTCTTAATACTCCAAGACTAATGACATCCTAGTCATATTATTCAATTACTATAGATACTTATCTGCAAACTGATTGGTTCTATTGTTCAGTTTTACAAGTCTGTAATGACTATTGGTTTAACATAGGTACCATCTGGGTGGTACACTGCACATAGGGGCCTGGACGAGACCTCTGTGAGTTTAGGGTGGACTGTAATGATGGAGAACCCATTTGGAAAGCCCAATCATGTCCTagtaacaatacatttacaaaCCCACTCATAGCCCATATCTAGAGATGATTCCAAACCAGTgatggtcataatgttctgatatgaccgTGTAGTTGTCATGTTTACATTTGAACCAGTGATTATTTCAATAGCAACACAAGGGCAGCTTCCATCCCTCCATGAGTTGTGGATTTTGCAGTTCTGAATCAGGCAGTGCCTGAAGGATTTTTTGAACTGCTCTTAAAAACTAGCTATAATGTTAGGAATTATAATTTGCTTAAGttgtaatcatttatttttgcaaatctAAGCTAATGTAATTTATTGATAAAACGCTACAGGATcacatttatgccaaaaaaaaaaattaaaaagtgctCCATATGTATTAGAGTACTCCATTTGACAACAATAGGACCATTTACTGGTTTATTTATTAGCCTAAAAATTACTTTGCGATAatcattttatcttttatgtCTCTTATTTGTAAGCTTGTCACTCTGATGAAAGTTTATGGTGtactttattgtactttattGTACTTTACAGTACTTTTGTCCACTCTGAAGCAATGAAAACAACGGCTGTAGATTTTAATTGAGGCTGTAGTCTGTGAGCTACCATGCCATGATTTTTATACAGTACATGTTAACAGTTAAAAGCAATAGGTGAACTTTTTAAAGCCCTTGGGTTTTTACTCTGTTTCTTTGCAGTGGGGAACTTTGAGAGGGACGGGATGACGAGATGGGTCTCTGTGCCTGGGCTGACTgtggggggtggtggtgatAAATCATGGTTCTGTTCTTTCTCTTCAGCCACACAAAACAGGCAGCTGCTCGTTAATTTTTTTGAGTAAATGACCTGATCAGTGATGTCTGCCTCTGTTACCTTAGTGCTCACCTTCTCTCTAACTGTGTACCCTGTTGTAGTTCAGCAGCCTGCTCCCATTTCAGAGGTAACACAACCAGTGAAGGAACTGCTTCTCTTAACATCGCATGTTCTAAGCAGAGCTTTTACCAGCTTTTATCAGTGTATTTTGTTAAGTCATAGTCGCATGGAGGACCCTGAAGTGCCATGTGTCCCCATTCCAAGTTCCAGGACAGTAATACTTGATGCCATGTTTTTGTTCATAGAAGATTACTGCTGTCACTCATGTTGGCCTGTAAATACACCTCAAAAATGACACAACCGTTCAGAGAAATACAATGAAAGTTCATTCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271719 lncRNA upstream 26473 27467360 ~ 27468802 (+) True G200148
TU271708 lncRNA upstream 49826 27444894 ~ 27445449 (+) True G200143
TU271683 lncRNA upstream 138334 27356720 ~ 27356941 (+) True G200125
TU271680 lncRNA upstream 160053 27332014 ~ 27335222 (+) True G200124
TU271664 lncRNA upstream 189689 27304558 ~ 27305586 (+) False LOC103023645
TU271747 lncRNA downstream 17752 27606473 ~ 27609051 (+) True G200166
TU271804 lncRNA downstream 142149 27730870 ~ 27740109 (+) False dync1i1
TU271880 lncRNA downstream 330734 27919455 ~ 27919995 (+) True G200278
TU271931 lncRNA downstream 414813 28003534 ~ 28003890 (+) True G200317
TU271942 lncRNA downstream 443130 28031851 ~ 28032098 (+) True G200327
XM_007259808.3 mRNA upstream 28771 27451009 ~ 27466504 (+) True casd1
XM_022683235.1 mRNA upstream 52225 27417573 ~ 27443050 (+) True col1a2
XM_022683236.1 mRNA upstream 52225 27417573 ~ 27443050 (+) False col1a2
XM_007259806.2 mRNA upstream 163686 27307466 ~ 27331589 (+) True LOC103023978
XM_007259805.3 mRNA upstream 189722 27304521 ~ 27305553 (+) True LOC103023645
XM_007259817.3 mRNA downstream 7137 27595858 ~ 27602040 (+) True asb4
XM_007259819.3 mRNA downstream 45958 27634679 ~ 27739497 (+) True dync1i1
XM_022683241.1 mRNA downstream 45958 27634679 ~ 27739497 (+) False dync1i1
XM_007259820.3 mRNA downstream 45958 27634679 ~ 27739497 (+) False dync1i1
XM_007259822.3 mRNA downstream 45958 27634679 ~ 27739497 (+) False dync1i1
trnai-uau_9 other upstream 4245 27490937 ~ 27491030 (+) True trnai-uau_9
trnai-uau_8 other upstream 5139 27490043 ~ 27490136 (+) True trnai-uau_8
TU271651 other upstream 210708 27284220 ~ 27284567 (+) True G200104
TU271396 other upstream 882093 26610429 ~ 26613182 (+) False c23h18orf21
TU271110 other upstream 1875146 25618034 ~ 25620129 (+) False ndufs5
TU271825 other downstream 226615 27815336 ~ 27818650 (+) True G200235
TU271914 other downstream 392792 27981513 ~ 27983350 (+) False LOC103032101
TU271959 other downstream 604853 28193574 ~ 28196198 (+) True G200341
TU272690 other downstream 1962415 29551136 ~ 29552883 (+) False eloa
TU273012 other downstream 3421205 31009926 ~ 31012165 (+) False rbm24

Expression Profile