RNA id: XM_007259817.3


Basic Information

Item Value
RNA id XM_007259817.3
length 1984
RNA type mRNA
GC content 0.50
exon number 6
gene id asb4
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27595858 ~ 27602040 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGTGAAGGAATTATGAAATTTTTGTGTCATCTGCCACAATCAATATTCAGAAAGGGatctgggctcttatgggttaataACTCAATCTTGCTTCCACACAGTGAAATTTACGCTAGTCCAGGAGGTGAAGTGTGAGTGTAAAGGTAGTCTGATCCACAGGGCTGTTGGTATGTGATGACTTCCCCCTGTCAGTCTATAAATATCTGCCCTCATTCGAGTCTCATTCGAGTATCCTTGTTTCACACCCTCGTCCTGTCTCTCTGCGGAATAGCCCACGCAGCTCATGCACAGCGGGAAATCACTGGAAACGCGCACAGAACTGTGGGCCTGCTcccctgagtgtgtgtgcatgtgtaggtgtgtgtgtgagagcttcagagtgtgtgtgagagatggaGGAGCGCGTGTCTCGGCGCTCTGAGGCTCTGAAGGAGCTGAAGTCGCGCTTTCTGGCGGCGCTGCAGCGCGACGACGCGGCGGAGGTGGGGAAACTGCTGCACACCACTAACATCGATATAGACACGGTGTTCGACGTGGAGGACCGCAGCATGGTGCTGGCCTCATACAAACAAGGATACTGGTTACCAGGCTACAAGCTGGAGTCTTCGTGGGCCATGGGTCTTCACGTGTGTATGATGTACAATTCGTTGGCGTGTGCTCTGGTGCTTCTGCAGAGTGGAGCAGCGCTGAACAGGAAGCCCAATGGGAAAACTCCACTTCACGTGGCCTGTGAGGTGTCTCACGCAGACTGTGTGAACCTGCTGCTGAACTGGGGGGCTAGGGTCAACAGTGTGTCACTGAGTGGGCACACTCCTCTACACTACTGCATCACTCACGAGTCTGTGGACTGCGCCAAGCAGCTCATCCTTAAAGGAGCAAATGTGAACACGGCCAGCGAGAACAATGAAGAAAACACTCCACTGCACACAGCTGCACGATTCGGCATCTCCGAGCTGGTGGCCCTCTATGCTGCTCATGGTGCTGAGGTGGATGCTCTAAACTCCCATTTTGAGACCCCCCTGATCACTGCTGCATTCTGGGCCAGACTCCGCGAGCAGACCTACAGCGAGGACCACCGCCTTGTGTGTCGGATCCTGCTGGACTACGGCGCCAACCCAAACCTTCAGGAGGAGGACAAGAAGACGGCCCTGCACAAAGCCTCTTGGAACTGTGACCCTATACTAATGCAGATTCTACTGGAAGGTGGGGCTGATGCCAGGATTATGGATGTGAACGGGTGTGCGGCGGTCCAGTACGTGTTGAAGTCCTTGCAGTTTCGGCCAATGTCTATACCTGAGCGCTGCTTCCAGCTTCTGCTGAACTATGGAGCAGCCAGAGTCTACCCTAAGCAGTTCCACAAGATATTGCAGAGTTGCTACGACTATCCCCGGGCTGTTGAGGTGATGGCCAATTCTTATGAGCATCTCATGAAAACCAAAAAATGGAGGGCAGCTATTCCTGACGCAGCATATGAGCGGTACAGGATGTTCTATGATTCCTTGTTCGCTGCTTGTACCAACAGTCCACGTACTTTGCAACACTTGGCCAGATGTGCCATACGTATGGCAATGTACAGACGCTGCGAGTCCGGCATTCATCAACTACCACTGCCCCCACCAGTCAAGAGATATATACTGCTGGAACCTGTGGGAATCGTATTCTAGACATTTTGCATTTTGGCTTTGAAATGCCGAAGTCTGCTGAACTCAAGCCTCTTTGTCTCAGTCAAATGTTCTGGGGCTTAACTGTTTTGAGCCTTCATTCCTCAGTCTCATTAGTGCAACTGGCTTATCAGTTTATATTATGAAGGTTACTGAATAATATAGCTAGAGTAtaaggaactgtgtgagaattcTGTCATAAAGAAGTTGACCTTTGTATGACATTGTATGACAGGATGGTCTGATGGAACCTCCTACCATTGTTCTTCCTGCTACCAGACaattcagaaaaataaatgtttccaTGTTTTTGAACTTGTT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10326 ASB4; ankyrin repeat and SOCS box protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271737 lncRNA upstream 80180 27511988 ~ 27515678 (+) True G200158
TU271738 lncRNA upstream 80180 27511988 ~ 27515678 (+) False G200158
TU271719 lncRNA upstream 127056 27467360 ~ 27468802 (+) True G200148
TU271708 lncRNA upstream 150409 27444894 ~ 27445449 (+) True G200143
TU271683 lncRNA upstream 238917 27356720 ~ 27356941 (+) True G200125
TU271747 lncRNA downstream 4433 27606473 ~ 27609051 (+) True G200166
TU271804 lncRNA downstream 128830 27730870 ~ 27740109 (+) False dync1i1
TU271880 lncRNA downstream 317415 27919455 ~ 27919995 (+) True G200278
TU271931 lncRNA downstream 401494 28003534 ~ 28003890 (+) True G200317
TU271942 lncRNA downstream 429811 28031851 ~ 28032098 (+) True G200327
XM_022683237.1 mRNA upstream 7137 27478736 ~ 27588721 (+) True ppp1r9a
XM_007259814.3 mRNA upstream 7137 27495275 ~ 27588721 (+) False ppp1r9a
XM_007259815.3 mRNA upstream 7137 27495275 ~ 27588721 (+) False ppp1r9a
XM_007259816.3 mRNA upstream 7137 27495275 ~ 27588721 (+) False ppp1r9a
XM_022683238.1 mRNA upstream 7137 27495275 ~ 27588721 (+) False ppp1r9a
XM_007259819.3 mRNA downstream 32639 27634679 ~ 27739497 (+) True dync1i1
XM_022683241.1 mRNA downstream 32639 27634679 ~ 27739497 (+) False dync1i1
XM_007259820.3 mRNA downstream 32639 27634679 ~ 27739497 (+) False dync1i1
XM_007259822.3 mRNA downstream 32639 27634679 ~ 27739497 (+) False dync1i1
XM_007259826.3 mRNA downstream 257084 27859124 ~ 27862168 (+) True dlx6
trnai-uau_9 other upstream 104828 27490937 ~ 27491030 (+) True trnai-uau_9
trnai-uau_8 other upstream 105722 27490043 ~ 27490136 (+) True trnai-uau_8
TU271651 other upstream 311291 27284220 ~ 27284567 (+) True G200104
TU271396 other upstream 982676 26610429 ~ 26613182 (+) False c23h18orf21
TU271110 other upstream 1975729 25618034 ~ 25620129 (+) False ndufs5
TU271825 other downstream 213296 27815336 ~ 27818650 (+) True G200235
TU271914 other downstream 379473 27981513 ~ 27983350 (+) False LOC103032101
TU271959 other downstream 591534 28193574 ~ 28196198 (+) True G200341
TU272690 other downstream 1949096 29551136 ~ 29552883 (+) False eloa
TU273012 other downstream 3407886 31009926 ~ 31012165 (+) False rbm24

Expression Profile