RNA id: XM_007259829.3


Basic Information

Item Value
RNA id XM_007259829.3
length 1006
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC103030526
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27896124 ~ 27901307 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gAGAGCAGTTAGAGGAGTGAGTCAGATTTTCCACAGCTCAGTTACGATCCACACAGCTCCACAACAACACACAGGACCAGCCGAGCTCCCCTCTGTCACTGCACTGCAGTAGGATGGCCTGGGTTTGCTTGTCCAAATGGCTGCTCCTCCTGAGTGTGTGCTGCCTTGGATTGAGTGCGCTTCACTTGGTAGACAGTGACTGGGAGTGGGGCTCAGGCCTGGAGGAGCTTCTGCAGAGCTTCCCAGCGGACAGCCCCTTCATCACAGAGAAACCTGGACATCCTGCCAACTGCACACAGCGCTTCTGGCTGCCCTCGTCCACTCCTGTGTGCTGGGATAACATAGTGGGTCCTGAGGAGTTTGAGCAGACCCGGCTGCTGGTTCTGCAGAACCGTGCGGCTCTGCAGGCCGTTTCCCAGGCCAGCGGCCTAGAGGAGGGGGGAGCCTCCTATGATCAGCAGGCCAGGGAGTTCATCAGAGGGGTCCTGGATGACCACAGCAACATTGAGCAGACAGTAGACTCCATGCAGGAGGTCTTCAACAGCCTGGACAAGAAAAGGAAGGAGGGTGGACAACACTACACCTTCTCCAGtTTAAAGGAGCAGATTGCGAACAACATGGACTCAATCGTCGGCAGGGATGAAATCGCAGCTCTTCTGGAACAGCATATTTCTGATCTGGACCGAAGCCTGTGCACCATGCAGCACCAACTAGCCAGATTTGGTTTGAGGGATATATCAGGAGATGATCCATTTTTGAGATGTGCATGAAGAACTTTTTAACTGTTTGAAGAAGTGGATAACATGATTCGTTACCAATTTAAACATCTTTAATTTTGGATTTAATTTgaaattttaatgaaaaaaaaaacaagtgtatGCTAAAGGCAAAGCCACAGAACTTGTTCTAATTGGTCTAAAGTTGGTCTAACATTGTATGGTGTAACAATAATTGAGACAAACTGCAAAACAGTGAATATTCAAATAAAACTAACTTGTAATGAAAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271804 lncRNA upstream 156015 27730870 ~ 27740109 (+) False dync1i1
TU271747 lncRNA upstream 287073 27606473 ~ 27609051 (+) True G200166
TU271737 lncRNA upstream 380446 27511988 ~ 27515678 (+) True G200158
TU271738 lncRNA upstream 380446 27511988 ~ 27515678 (+) False G200158
TU271719 lncRNA upstream 427322 27467360 ~ 27468802 (+) True G200148
TU271880 lncRNA downstream 18148 27919455 ~ 27919995 (+) True G200278
TU271931 lncRNA downstream 102227 28003534 ~ 28003890 (+) True G200317
TU271942 lncRNA downstream 130544 28031851 ~ 28032098 (+) True G200327
TU271947 lncRNA downstream 161063 28062370 ~ 28081260 (+) True G200332
TU271949 lncRNA downstream 195695 28097002 ~ 28097344 (+) True G200333
XM_007259828.3 mRNA upstream 2598 27873876 ~ 27893526 (+) True ago2
XM_007259826.3 mRNA upstream 33956 27859124 ~ 27862168 (+) True dlx6
XM_007259819.3 mRNA upstream 156627 27634679 ~ 27739497 (+) True dync1i1
XM_007259830.3 mRNA downstream 4874 27906181 ~ 27919226 (+) True LOC103030835
XM_022683240.1 mRNA downstream 4874 27906181 ~ 27919226 (+) False LOC103030835
XM_015608490.2 mRNA downstream 32071 27933378 ~ 27967499 (+) True LOC103033782
XM_007259836.3 mRNA downstream 76975 27978282 ~ 27987895 (+) False LOC103032101
XM_007259835.3 mRNA downstream 76975 27978282 ~ 27985958 (+) True LOC103032101
TU271825 other upstream 77474 27815336 ~ 27818650 (+) True G200235
trnai-uau_9 other upstream 405094 27490937 ~ 27491030 (+) True trnai-uau_9
trnai-uau_8 other upstream 405988 27490043 ~ 27490136 (+) True trnai-uau_8
TU271651 other upstream 611557 27284220 ~ 27284567 (+) True G200104
TU271396 other upstream 1282942 26610429 ~ 26613182 (+) False c23h18orf21
TU271914 other downstream 80206 27981513 ~ 27983350 (+) False LOC103032101
TU271959 other downstream 292267 28193574 ~ 28196198 (+) True G200341
TU272690 other downstream 1649829 29551136 ~ 29552883 (+) False eloa
TU273012 other downstream 3108619 31009926 ~ 31012165 (+) False rbm24
TU273004 other downstream 3111404 31012711 ~ 31015045 (+) True G201018

Expression Profile