RNA id: XM_007259838.3


Basic Information

Item Value
RNA id XM_007259838.3
length 7585
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC103032937
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 28038748 ~ 28096817 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

actatATTTTGTAAGAAATTATTGCATTGCAataaatttacatatatatatttttttcgattTGTCGATAATTATATGTGCGTTATCCGCTTTAATGTCAAGATTAACGACGATATCTGCGATTCATTGTAGTTACAGTTCATAGATTTCTAGGGGAAACATAGCGTTAGCTATAGTGTTATGATAGGATAGCTAATCTGCCACGCTCATCGTTTTTGAACCAGCCTAGCTACTACCAAGTTCACGGCGATCTAATCTCTAACAACACTCGTCCCTTTGTAACTAGCAAGACGTTTATTAGACGGCTGTGAAAAGCGTAGCCTGTAGGTCGGGATGCCGGACAAGGTTCTCAAAACGCTGAAATAAATAATCCTTAAAGCGCCTGAGTCGATCAGCCGTGATGGCGTGGAGAACGGAGTTAATATGGCTGTCCCCAATTTATCTGCTGCCCATGTAGTAAAGTAGCTTCTTCgccttgtgctgctgctgctgctgctgacacGACGCGCATAACAAGCCGTTTAGTTTCCCATCATTTTCAGAGCTCCTTGTCCCCTCCCCTCCAGACACAGACAACAACATACACCTTAATAGGGGCGCGTCTCCGACACAGCCGCCGACCAATAACCCGTCTGTCTGGGCAGAGACCGAGGGGGATGAGCGCCTGTCGAGGCCCAATCAGCGCCTTTGTGTTGCCTGCCGGTGCCGGGGACTGGTCGTGAGGAGCTACTGCGGCGCTTCGGGATCGGCGAGTGAACCCGGATCCAGAGCAACCTGAAGGGCGAAGGCGAGTCAGGATGGAGCGGATGTCTGAGGAGGCGTTGCGGTTGAACCTGCTCAAGCGGGGTTTGGAGACAGCGGACGAGAGGGAGGAGGCTCTGGCCAAGCGTCTGAAGATGGAGGGTCATGAGGCCATGGAGAGGCTGAAGATGCTGGCCCTGCTCAAGCGGAAAGACTTGGCTGCCCTAGAAGGCGCTGCTATGGCAGCGGCCATGGCCGAGGGCAAAGGCCCGGGAGGCAGCCAGGGACTTATGGGGGCCTCTGCCTACGAGGAGAAGCTGAATGGCAGCATGAGGGTGGTAAGCCACGGAGGGCCCAGCAAGAACGGCAAAGAGAACATGATGGACGAACCTGTAGATATGAGCGCAAAGAGGAGCGATGTTGATCGAGAGAGACGCACTCCATCTCCAGACGTGATCATCCTGTCAGATAACGAGGCGTCAAGCCCACGCAGCACCCCGCACCCAGAAGAGCGGCACCACCGCCCCAACCTGGAGATGTTTAAGgggaAGACAGGtgaggagaggcagcagatgaTCAAAGCGCTGCGtgaggagctgaggctggaggaGGCCAGGCTGGTGCTGCTGAAGAAGCTGAGACAGAGCCAGATGCAGAAAGAGAACGTGGTGCAGAAGgTTCCAGTGGTCCAGAACACCCCCTCCTCTGTTCAACCCTCTCCCATCCACAGCTCACAGGGGTTGACTAAGCTGCCCGTTCGACCGGGCATGCACACATCTGAGCCCCAGAACCTCCGCGCtgcacagGGCCACACGGTGATCAGGTCCGCTGCCAGTGCCTCCCTGCCCCCGATGATGATGTCCCAGCGGGTGATCGCCCCTAACCCAGCCCAGCTGCAGGGTCAGAGAGTGCCCTCTAAGCCTGGCATGGGCCGATCCTCCACAGGAAGTATGGGCAATGCAGTCAACTACCAGCAGGCTGCCAGCCAGCAGGTGGCGGCCTCCCAGCGCTCCAACTCCTCCACGGCCATCTACATGAACTTGGCCCACATGCAGGCGGCGGGGGTGCCAGGTGTCGGGGTGGGTGTGAGCGGGGTGGGGGCGGTCAGCCCCTCCACACTGCCTAGCGGGTCTAGCGTGGCCGCTGTGGGCAGCGTGAGCTCACTGAACGACCAGGCCAGCAGCCAAGCGGCTGCCAAACTGGCCCTACGCAAGCAGCTGGAGAAAACCCTGCTGGAGATCCCACCACCCAAACCCCCCGCCCCCCTGCTCCACTTCCTGCCCTCAGCCGCCAACAGCGAGTTCATCTACATGGTGGGGTTGGAAGAGGTGGTGCAGAGTGTCATCGACAGCCAGGGTAAAATGAGGGGTTCACTCTCCCGCTTGgagccgtttttctgcgctcaGTGCAGAACAGACTTCACCCCCCACTGGAAGCAGGAGAAAAGCGGACGCATTCTGTGCGAACAGTGTATGACCTCCAATCAGAAGAAGGCCCTGAAGGCCGAGCACACCAACCGGCTGAAGAACGCTTTTGTCAAGGCCCTGCAGCAGGAGCAGgagatcgagcagaggctgcagcagcaGGCAGCTTTGTCCCCGAGTGCAGCTCAGACTGTGCCCAGCGTCAGCAAGGCTGAGAGTATGATCAGACACCATGCCCTCCGACAGGCGCCTCAGCCACAGGCTGCCCTGCAGCGAGGTCTGTCCAGCTCAGCGCGGGGCGTGCTCTCTAACTTTGCCCAGGCCTCCCAGCTATCAGTGGCCAGTGGTCTGTTGGGCATGACCAGCAAGCGCTGCGGAGGGGGCAGTAGCAGTCGGCCGCAGCACGAAAGCCGCCGGCAAATCTACAACATCCCTGGACTGAATATTGCCTATTTGAACCCTGGAGCCGTGGGAGGCCACAAGGCATCCAGTCTAGCAGACCGACAGAGGGAGTACCTGCTGGACATGATCCCCCCTCGCTCCATATCTCAGTCCATCACCGGCCAGAAATGAGCTCCAGCAGACCGACGAGCCCCTTCTGGACACCCCTTCACTCCTAAATCCcccacacactcttacacacgcacacacatacatgcacttcacacacacacacacacacacatacacaaaaatacacacatacacacacagagaaatacACACAGCAACCATCACCCCCGTCGCATGCAGTGCCTGTCCGTGTGCCTACCCAACTAACCCATGAGAACGACTCAGACGCCAGATGATGAACAACAGACTGTCAGTGCATCTCGACTTCAGTTTCCTACTATAGCAAAGCTCTTTATTTCAACTTATTATTGCTGTTGTTATTGCTctgtctattattattattattacttctgTTGCAGGTATTCTTATTATGATTATTAGTATTCTTAGtgacttgttttgttttttttattttctttttttcttgcatattttatttatttcttttgtgaGGGAGGAGGCTAGATGCCAGGGTCACTTGAAAACGGTTGctcttctgttgttttttttcttccttctgAGCTTCCTCCCTTTTGCACCCTGTAAAATGATGAGAGTTAACTCTCTCATGACGAaagctcttctttttctttgatTGTTTATTCCCTCACTGAAGCTTACATCTACGGCTAAGCTTTCAGAATGAGAACATTTCGGCTATGCCATCTGGAAAGTCCAGAGTCTTTGTAGCAAATGTATTTAACTACCAGTCCTTTAAGGAAAGAGCCTTGGTGGAGACTGGGTTTCCGACTTTTCTGGTAGACTGATCCTAATGCACTGAGACGCTGATTTGACAGTTTCTTTGCCTTGAGAAGGCCACACAGTATCGTGAGAACACTAGGAGAATCTGCAGACTCGCTCATGGATGATGACACTGATGTTGAAGGATGTTCTGGCCTGTATCTTGTACTGCACACAGGAGGGGGCGGGAGCGTGGTTCTGATGAGGGCGTTGCCACTGAATTTATAGAATCTGCAGCAAATTTTGAAACCCATCCCTGTTTAATCCTGCCATGGATGGTCTTCCCCCAAATCAATGCCTACGCTTTCACCGGACACCGTGGCGCCAATGCTCTGAGAACGGCTTCCCCTTGTGGTGCCACATGATTGGCTGTGTAAGAAGGGATTTAGAATTCCATTATCACCATGAACTTTATTACTCCCCTTTGAGTTTCAGTTctactttattttctatttttatttgttacattttagtttttttgttttctcttttcctttttggCGGCGTCTCTTGCTGAAACGGTTGCGTATCTGAAAGGTACTTACCACAGGAGACGATAATCATGGAAAAACTAAAGCAGACGGAAACTATTCAAATATCTATAAGGTTTATGTATAGATTCTTAGCATGAGAGAAGGTTTAAGAGAAGGAGATGCATATATCTATAGTGGCATAGGCAAAGGATCAATCAGCGTGTTAGGGCAATGCACGCAAGGTGCCTCGTTCTCCAGGAGCACTTTTGTTGTTTAGAAGAATGAGGGGGAAAATGGGAAGCGGGGTGGGGCGGGTGGGATAATATGGTTAGAAACAGGACAAGAATGTTACAGCTGCCAGGCTCTTGAAGGTATGGATGGCACCACACTgtctgagagagacagaacagacagagaccagagagacagagagagaccaCATTGCATGTTTTCCAGAGAATCTTGTGCTAGAGAAACACTTGTGGTTATCCATGGTCAGTGTTCGCTGCTCTGCCCCCTAGTGGAAGCCTGCAGTAACTTGTGTAGGTAGTACATAAGCAAGTATGTGAACAGTTACGTTCACTACGCAGCACGAATATCTCTAACCATAGACTTGCTGTTTCTGTTAAATCATGATCAAGGATTTGAGcccaaaatagtaaaaatgttGAGAAAAGGACATTTCTGTTACAGTGCAGTGACTCTCTCTCAGTGGACAACCGTCCTGTTACTATATTCctgtttccttcttttttttttttcagatggcAGTTTGGGCAGTATGTAATGTGTTGCGTAAggtgtagcagcagcagcagcagtgtttggTCAGTATGCAGTATTAGCAGTTGGATTGGCTGTAATATATGAATAGGGCCCTGTGATTTCTGCATGTATGTACAGGACAGAAATGAAAAATTAACAATTctgaaaaaagaatgaaagctgaattttggggaaaaattaaacatttattttatagggTACTAAATATAGTTAGACAGAAATCcacaattgtatttattttttaagtttgtttttttagggtGGTAGACAGCATTTAAGCCACTTGACTTTGCCCTCACTCTCCTATTAAATTAGCACTTGACACAAATGCTGTATTACAGCAGTATGTATCGATTTTACAGGAAAGTGGCAGTCATTAGATTAAAAGTTGTCCGATTCCCAGAATTTTGTAGCCACAGCACTCAAATTTAGGCACTTACCTCAACCATTCCCAACCAGATTGTTTCATTTAGGCATTGGACTCTGAGGTCAGCATGCAGGTCAAGCACAGCATGAGGGCTTTCTGCTGAAGCACTCCCGCTTCACACGTTTCCTGAAAGAGGCAAAACATGTAGAGTCAGTGCACCGGTCAGTGCAGGTGTACTgctgtggtttggtttggacgGAGCGATGCAACTTTTAAACAAATCATGGAAACTACCTTTGGCTTTGATTCGCAGGTGCAATATTAGATGGTAGAAAGTTTACACTTGTGTTTATACTGTCTTTGAATCAGCCCCCttttattaaaatgcttttgcgttttttttcccctccttctTTTACCTACCATCATTTttatgattcatttttttttaactataattctgtttttggtgtgtttttttttttttttaatacattctcTTATTAAAGCAAATGCAGGACGTGTATAGTcagtccccctctctctctctctctcccctctacTCTCTCTGCCAGACTGTAATGGATGCATCCATATACCTTTGATATCTACCAGTTGGACTTATAAAATGAAATGTCATTTTCTAGACTTTTGAAGTATTACACTTCCTTTGATGACTCCTCTACGTTTGGTTTGCAGATTTCATTTCTGATATTTcttatgggaaaaaaaaaatcaagttaaatcaaactaaaaaaaaaatgaactatgAGATGACAAACACAATACTTGCTAGGTCAGAAGTAATAATGACTTATTGTACATacgctttttttcttttctttttttttttggtcccttgaatttaaaaaatgaaatgaaattaaaatggtTGTAAATTGTGtagaaaagcaaacaaaaagccATGAATATTGTGAAGCTTGTCATTTTGTTTTGTGATCACTGTGTAATATTGTGTAACAAATGTGCAAAATGTACGGGATTATActtctcttgttttttgtgaatgAGCTCTTTTTCGATGCATTTTTCTCCctggctgtatgtttttgtagtatgtagtatttgcaaaaggaaagaagaaaaagatttTGTCCTGGTGGAGCGTTTGATCCATTCTGCAGTCTTTGGGCTGGGACTTTAATGGGATATTCTTGTATATGtcactttttgtgtgtgttgctgatttttatttgattctttTGTCGATAACATTGAAGTTAAACCAATGTTCAGTGAAATACATTGATTTCTCCAGATGTCCCACGTGGACTGTCCGCCTCACAAGGCTCAGAGTGGATCAGACATTTGACAGTATTACCCCACACCTGACCAAATCCAAAGCACTCACCTGTAGAGGCGAAATCCGGCGATGCGCACATTTACCTACCTTCAGTTGTTCAGTTTGAGTTGAATTACAGGGTGTCATTGACCCTTTTGGGAGACTGtcaattctcattttctatttACTCATGATTATATAAAGCTTTCTtcagtagatttaagtatgccTCTTATTCATGTTTTCCCCTAGTGGGGAACTTTTGCAATgctcttattttgttttccaTGGAGAGTTGTATACATTGTATACGTCCATGTTTTATGGAgaacttgtgttttttttttttttactgttctgaTGCgtactgctttcagtttagtaaAATCTTAAGATTAAAAAAGTGGGACTattttgcacactttttaaGTATTGAATATAAAGATTGTGACATTTCTTAGATATTCGTTCACATTTCATTGTCATGGAGTAACTGTCCATAATTCTCTGATTGGACAATCAGCTTTTCTGGAGACAAGCGTTTTAGCACTGGGGTTTATGTCTCTCCACCACGTGATGTCACTCTAGttttaaaattctttattttatattttttgtcctTGTTCTTTTACTGCTAAGACTTTTTGTTTTTCCTGATTTCTTGTTAATTGTTGCAAAATACAGGTCATTTTTGTTGAAGTGGGAGATGGGCTTGGATcatattttctttgattttaaatttttttcaacttttgaATCTTTTGTAAACAGGACTTGGCTGCAATCCACCAGTTTGAATATTCAAAACACTTGGCAATatgtaaatcttttttgttaaaagaaaaaaaaaaatgtgattaagttttaaaaagaacaaCTGGGCTTGGGATTGGCTTAAAATGGTAATGAATTTGAAGCAAagctaaaaatgtgttttttgtcaagttctttttttttttcatttttttttcatttggaaCATTTAATCCAGACCTTTTGCACATCCTTGATATTTAACTGTCAAAAAAATGGAGATGAAAAAAAACGCTGTTTGATTACTGCCGGTTGATTAACAACAATTATGCattgactgaaaaaaataagctaATTTTGGAGGAAATAactttgtaatatttatctctTGCAAGCTATGTTTAATAAAGGATGGAACAGTTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23194 GATAD2; transcriptional repressor p66

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271942 lncRNA upstream 6650 28031851 ~ 28032098 (+) True G200327
TU271931 lncRNA upstream 34858 28003534 ~ 28003890 (+) True G200317
TU271880 lncRNA upstream 118753 27919455 ~ 27919995 (+) True G200278
TU271804 lncRNA upstream 298639 27730870 ~ 27740109 (+) False dync1i1
TU271747 lncRNA upstream 429697 27606473 ~ 27609051 (+) True G200166
TU271949 lncRNA downstream 185 28097002 ~ 28097344 (+) True G200333
TU271950 lncRNA downstream 6156 28102973 ~ 28103203 (+) True G200334
TU271969 lncRNA downstream 115035 28211852 ~ 28214348 (+) True G200349
TU272005 lncRNA downstream 296302 28393119 ~ 28394226 (+) True G200371
TU272027 lncRNA downstream 503540 28600357 ~ 28601472 (+) False G200389
XM_007259836.3 mRNA upstream 50853 27978282 ~ 27987895 (+) False LOC103032101
XM_007259835.3 mRNA upstream 52790 27978282 ~ 27985958 (+) True LOC103032101
XM_015608490.2 mRNA upstream 71249 27933378 ~ 27967499 (+) True LOC103033782
XM_007259830.3 mRNA upstream 119522 27906181 ~ 27919226 (+) True LOC103030835
XM_022683240.1 mRNA upstream 119522 27906181 ~ 27919226 (+) False LOC103030835
XM_022683242.1 mRNA downstream 33650 28130467 ~ 28176690 (+) True tinagl1
XM_007245644.3 mRNA downstream 259723 28356540 ~ 28369342 (+) True LOC103025163
XM_007245646.3 mRNA downstream 259723 28356540 ~ 28369329 (+) False LOC103025163
XM_015604906.2 mRNA downstream 259723 28356540 ~ 28369329 (+) False LOC103025163
XM_007245645.3 mRNA downstream 259723 28356540 ~ 28369329 (+) False LOC103025163
TU271914 other upstream 55398 27981513 ~ 27983350 (+) False LOC103032101
TU271825 other upstream 220098 27815336 ~ 27818650 (+) True G200235
trnai-uau_9 other upstream 547718 27490937 ~ 27491030 (+) True trnai-uau_9
trnai-uau_8 other upstream 548612 27490043 ~ 27490136 (+) True trnai-uau_8
TU271651 other upstream 754181 27284220 ~ 27284567 (+) True G200104
TU271959 other downstream 96757 28193574 ~ 28196198 (+) True G200341
TU272690 other downstream 1454319 29551136 ~ 29552883 (+) False eloa
TU273012 other downstream 2913109 31009926 ~ 31012165 (+) False rbm24
TU273004 other downstream 2915894 31012711 ~ 31015045 (+) True G201018
trnaq-uug_6 other downstream 3333730 31430547 ~ 31430618 (+) True trnaq-uug_6

Expression Profile