RNA id: XM_022683203.1


Basic Information

Item Value
RNA id XM_022683203.1
length 6529
RNA type mRNA
GC content 0.44
exon number 8
gene id col8a2
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25416568 ~ 25526086 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAGGAACATGGTGTATTTCTTCTAAAAGTGGCTCCTAAGAAAGGCAAACTGTGTGCTAGACTAAAAGCTAACCAAGCTGCAGTCtttatagttagctaactgcaAACCACACTGAGAGGATACAAGGAGCACACAGAGAGCTCAGCAACATTATGAGACAGGCGGCTGATTTAGCGTGGAGAGATGTCAGGCTGAGATGTGGACTGATAAAGAGTGGGGCAGAAAGTGCTCATAAAGCAGTCTCCTACCACAGACAGGCCAGAACGTTTGCTCAACCTCCCTGCACCCTGAAATGAACACCAGTCTTCCCTCACATGTTCAGACACTCTTCGTGAGAGCCCGATGGGAGACTTTACCAGACTTCCAGAGGCAGAGTATCATGATGAAGATCAACAGCTCTTTAATGGGATCCTACCTATAATCAATGGGCACAAGGCAACAGCCTGGACATAGCACCAGTCCATTGCAGGCCACCCAGCTGAATGTACTCCACATTCTCCTCCAATATGTGGAATCAAGTGGAGCAATGTGGCTGCCCTTTTGAATTCACAGCTGTATAATGGATGCCTCTCAGTCTTCTTTGGCAGCTGCTCTCTTTTCTATCAGATTCACGAGCCTGCCAACTTTCAGCCCCTGCGGATCAAGCAAGTATAAACTGGTCTTTTCCTCAGCTTCGGACCCAACGAATTTGTGCTTTCAAGGTCCACTACTAGAACACAGTGCACAGTAAACAGGGCGACGATTAGCCGCGTGCCTGTTTATCGCCTGTTCCAGTGCTTACGAGAAACATAAACTCAGATTAGCATCTGATAATGCATCTGATATCCAGCTATGTTAGAGGTTGTATGGGTGGAAGGCATCCAGTGGCAGGTCCCAGCAGTAGCGCCGACAACAGCACAATACCCCACTTGTTGCTGCAGTCTGTTCTGGCATGGTCCGAAGCTGCGTCGAGCCTTTCCCGAGGCTTCAAATAGCCCCATTTTTCAGTGTGAGCTTAATCTAATCTCGGGGTCCATGATTGGATATGATGATAAAGTTGGTGTTGCTAATTACCTGCTGTGTGTGAACAGCCACCCATATGTTGCCCAGTTGCACAGAGATCCTTTAGAATAATTGAGCATGAATGCGTTTATTGTAATCTTAACTCTTAGACATTTTTGATGTGTGTGATAGCATGCAAATTGGAAAGTCGTAAGTAGTCATGACTCATTTGCTAATAAAAGATAATGGAGACTTAGTGGCATCTGGAAGAtctgatactgtatatactagGGGTTAAATGTATACTACAAATTTTTACTAGTTGACGAATTgttcaaaaaacaaatattcaaatatttgtaACTTCCATAGCTATGTTTAGCTCTTTTTCCGTAAGCGTGGTTTAATGCTAATCGATAACAGCAACAAATGTGTCAAATCGTATTATGAACCAACACACACCCTAAATTAAACTTTCACATTCAGTGTTTCCTAGGCTACGCTTTTAAACAGGAagacaaatacatttacatagtTATATGGCACATGACCTTACTTTATATTGTGTCTCTCACACTGGATATATAAACATGGTTGAAATGTCATACAATTCCATTAAATGATCTTCCTTGTGCAGTcagtatacaatatacaatacctTACTCActttcagcatcctcacagctcCATAGTGCCTGTGCTTGTCCATAGATCGGTAGCGATTGAGACACTTTGACATTTCTTCTCTGTGGAAATACTCACTTTCAGATCACTGCACTGCTGCGTGGTTGTAGGTTTGTGTAgtttgtctaaaaaaaaataactgctgATGTGTTTTTCTCCTTTTGACTAGTCGTCAGCTACCCACTGAGGCGACTAGTGGATGTTCTTGGTTGACTAGTCGATTTCTCTATGCAACCAACAGCACATACTAAGAATCTGCTGGAGACAAGACGTCAAGTCATCAGAGGGGGCATGAGCAGAACAGCAGCAACCTGCAGACCTGCATACCTGCCTGAGAAATTAGCCTGAATCTGCCCGAAGTTCTTTCTCAAGCAGAAGAGAAAAGATTGAAAGTTCTGAAACCACGAGGTAGATCACCATGCTGCtggtgcctgtgtgtgtgctgctgatGCTGGGGGGCCACGCTCTGGGCGGGGGATACGCCCCTGTACCCCAGATGAAGTACATGCAACCAATGATGAAGGGGCCGGTTGGACCTCCTTTCAGAGAGGGGAAGGGCCAGTATCTTGaaTATCCACCTGCGATGAAGGTGAAAGGGGAGCCAGGCCCTCAAGGGAAGCCAGGTCCTAGAGGTCCAGCTGGGCCCCCAGGTTTACCAGGAAAACCAGGTTTAGGTAAACCAGGCCTAAATGGTCAGGCAGGACCCCAGGGGCCAGCTGGCCTGCCAGGAATTGGAAAGCCAGGACTGCCAGGTTTGCCGGGAAAACTTGGGCCCAAAGGGCTGCCAGGAATCAATGGTGACAAGGGACCTCAAGGTGAGCCTGGGCTACGGGGATTGCCTGGACAACCAGGAGCACCTGGACCTGCAGGTCTATCATTGAATGGCAAACCAGGGCTCCCAGGAGTTCGAGGTCCACCAGGATCCAGGGGTGAACCAGGTCTAAAAGGTGGCCGTGGTATGCCCGGTGAACAAGGCCTCAAAGGGGAAAATGGCAATGGCAAGATAGGTCCACCTGGCCTTAGAGGTCCAGCTGGCCTTCCAGGAGGTCCTGGGGCTCCTGGAAACCCAGGTGTGGGCAAGCCTGGGCTTAACGGGTTACCTGGACCTCTAGGACCAAAAGGGGACCAAGGAATTCCAGGCCTTCAAGGTCTTCCTGGGGATGCTGGGCCTCCAGGACTGCCAGGGCCAGCTGGGCAAGCTGGGTTGGGAAAGCCTGGGATTGATGGTGTTCCTGGAAGACCAGGTCCAATAGGACCAAAAGGTGAACCAGGCCTTAGGGGGACTCCTGGGTTTCCTGGAGCTCCTGGCTATGGTAAACCTGGCCTTTTAGGACAGAAAGGTGACAGGGGTCCTGCTGGATTACCAGGTGctgttggtgataaaggtgaACCTGGCATGGATGGTCTACCAGGTGATGTTGGGGTAAATGGGCAGCCAGGACCTCAAGGTCTGCAAGGTCCAATGGGTCTTCCAGGAAAGCATGGCATGCCTGGTCTGAAAGGAGAATTGGGTCCTCAAGGGCCTCCAGGTTTGCCAGGGCTCAGAGGAGATCAAGGTCCCGGTGGTTTGCCAGGAAAGCCTGGTATGCCAGGGGATAAAGGGCTTCCAGGGCCAAATGGAGCCATTGGAAAACCAGGGCCTAAAGGCGAAGCAGGTCACACTGGTTTCCCTGGTAATCCGGGCTTGATTGGAGTACCAGGTCCCAAAGGAGAAAATGGTTTTGTTGGGCCCCCAGGACCACGTGGCCTATCTGGAATTCCAGGTCTACCTGGACCAACAGGACATATGGGACCACAGGGCATTCCTGGGTTGAAAGGGGAACAAGGTCTACCAGGGCCACCAGGAAATGGAAAGAATGGGGACCAGGGATTAACCGGTCCACAGGGACCGCCAGGAAAACCAGGCCCTCCTGGAATAAGTGGTACTCAAGGCCCTCCAGGTCCTCCAGGTCCTCCTGGCCCTCCGGGCCCAACTAACGGAGATACAACAGTGGCAGGGCTCCAAGGTCCTGATATTGGGGGAGAAACGATAACAAATCCAGGTGCTGGAAAACCACAGTTTGGTGTCGGTGAGCTTTCTGCCACAATGGCTCCAGCATTTACTGCCATCCTCACTACACCTTTCCCACCTTCTGGTATGCCCATTAAATTCGACAGGACTCTGTACAATGGACAAAATGCTTACAATCCCACTACTGGTATCTTCACAAGCCCACTGCCTGGAATCTACTACTTTGCTTATCACGTTCACGTAAAGGGAACCAGCCTGTGGGTGGCACTGTACAAAAACAATGTGCCTGCCACATACACCTATGACGAATACAAGAAGGGTTATATGGACCAGGCGTCAGGCAGTGCAGTGTTGGAGCTGAAGGAGAACGACCAGGTTTGGGTGCAGATGCCATCTGACCAAGCAAATGGGCTTTACTCCACCGAGTACATCCATTCATCCTTCTCAGGGTTCCTTCTGTGCCCTACATAACAGTTTATATGATCCATCGTTTATTGTTCCAGCGCTCTGCGGTCACTCAAGTAACACCTGTAACATCGATAACAGGAAAGACTGAACACCAGAAAAGCCTAGATGAAAGCAGGAGATGAAAACTTTATGCTGTGTCCATGTTTTAGCCTTTTCAAATGTCtgatttgatttttgttttccttCAAGTGTTTTTGGTATCTTCAGCctatattataatgttattataactgttatattattattgttgctgttgttgtgttattttaattGATGTTGTTGTTTATCGGAATCAGACAATGTGTAAGTAACAGTTTTACCCATGTGACTGCACACTTTGCCAAATGTTCTGACTCCCATTGAACTCCATTTCTTTCGACTCTGGGGTTGTGTGTTCCCCTGGCTGCAGTCACATTCAGCTCAAGCTCTTATTTTCAATCATTTTCAACAACATTTCCTCTTTACTACCCTGACGGTTTTAAGTTTACTCTAGGGAGTAAAGTCTTAACTCTAGGCCAAATgtcataaaatatgttttgtttactatgtGTTACAGTTACAATTTGTTGCTAATGTGCCTAAATCAGTGATATACGTGGAGAGTATTGTCCTTATCCTTGAAGTGAAAAGTTTTagaatattattttgaacagaaAATCAGTCTGAAATTCTAGTCTGaaacattacaaaataatacacaaGTATTATCTCCCTGTATTGCtggcatttatatatttttaagaagatATTTAGATGAACTGTTAATGCATTAACTGTCTGAGTGTAAAGACATAATGAACTCTAACCTATGCATTTGATCACAGTATGTTCAAAGGTCATTACAGTTCTGAAACTTATATTGTACTTAACATCGTATTAAATAGTGGACATTCatttttgaatgttttaatCATCTACACACTTAATTCCATTTAAGATTCTTTGGTCATTCAAATTAGTTAAAGTTGAACATCAAGAGCTTTTTTCCAGAACTTGAAGACATGGCCCATGTCATGTGAACTGTGTCTTTCGCCTTATTGAACATTTAACAAATTAATTACTGGGCATTGTGCACAACATCCCAGTTTATTATTCAGATGTTCTGTTCATTGCTTTCAATGCTCGCACAAAGAAGACTTGATCATGAATTATTCAGGCAGATATTGAATGATTAGTTCATAGTAATGAACAgattaaataaatgcactggaTCTGTCGAACAAAAATGATTATTGCAACTCATCCCTATTTGTTATAAAAGGTTTTCAGAAACAAATAAGAACATGCATATGCAGACCGTAACAATGAACACAAAATTAATTATTGACCCTGAGTTGGCTGTAAAATAAATTGTCGAGTTGTTATTCCCAAATAACCCCTGAATTACCCATTGGGTTTGTCACGTATTGCAAAATTGAGCCAAAATGTTGCTGTTGTTTCATCTGGTGCTAGTGATATCTTAAAAGAAGCGTTATATTACAACTACATCATTCATAAAGCTGGAATTACTGTCATAACAAACTGATTCCAAAGTGTGCCAACTGTGGTGATATGTAACAGTTATTCACCTTTTATCCCCTTTTGGCTGTTCTCAGTGTAGCCAGTCAGCAATTCTTCATTGCTTTTCtctgttgttaaaatatttacCTCCCCCCAAAATATTACTGCATTTAAGACAAGAGCCAATCATTTCATCTATCCATATCCTATAGccatttccatttattttttcacagagagctttgatttttaaaatttgattcGCTCCATCTTTAATGTCAGTATAAACAGAGGCTTTGAAATCAgcgtatatatttttaaatgaaatcaataaaaaattgtCAGGTAGATTCATTGTACTGTTTCCCCTCAGATCTGCTAGACTCGgttttcctttcattttcatGCCAAGAAAATTCTTGCTTCGGTTTGTAAGGGATATTTGTTTGTTACGGACAAGATAAACACAAACAACCCGTCCCATTTGCACATTAGCGTAAtgaaggtgtatttatactgtacatatgtgATGAATCAGCAAGAATGTCTGCCTACCGAAGCGTCCATTGAAATAAcgtacaaataaatatatataacagcaTTGACAAGTTACGAGTATTGTAGTTAGCATACTACCGTCGTTAAAGGAATATTTTGTCGAcctttacttcttttattttttttgtatgtactACGTATCAGATTATAGGGTTCTGTTTTGGTTGTTTGATGTATACAGGGCTATTGCATTTATGCTGTGCAATAGACTTTGGGTATTAAATGCACTCTTTTGACTGAAAATGTTTTGTCAGCTTATAAGAAATCTGCAGTACTTGATAGTATTGATACAATATCAATAAAGATTTTCTtgtacaaatactgta

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K23455 COL8A; collagen type VIII alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271050 lncRNA upstream 37743 25378579 ~ 25378825 (+) True G199684
TU271049 lncRNA upstream 38422 25377397 ~ 25378146 (+) True G199683
TU271032 lncRNA upstream 107621 25308642 ~ 25308947 (+) True G199669
XR_455590.3 lncRNA upstream 115712 25297042 ~ 25300856 (+) True LOC103041709
XR_002651734.1 lncRNA upstream 115712 25297043 ~ 25300856 (+) False LOC103041709
TU271134 lncRNA downstream 398133 25924219 ~ 25925193 (+) True G199739
TU271135 lncRNA downstream 398133 25924219 ~ 25924536 (+) False G199739
TU271136 lncRNA downstream 398828 25924914 ~ 25925193 (+) False G199739
TU271137 lncRNA downstream 398828 25924914 ~ 25925353 (+) False G199739
TU271139 lncRNA downstream 403838 25929924 ~ 25930410 (+) True G199741
XM_015608266.2 mRNA upstream 39366 25370501 ~ 25377202 (+) True trappc3
XM_022683200.1 mRNA upstream 340777 24648033 ~ 25075791 (+) True csmd2
XM_007249264.3 mRNA upstream 1165179 24241364 ~ 24251389 (+) True LOC103034043
XM_007249265.2 mRNA upstream 1467575 23942554 ~ 23948993 (+) True ilf2
XM_007249266.2 mRNA upstream 1467575 23942554 ~ 23948993 (+) False ilf2
XM_022683204.1 mRNA downstream 3318 25529404 ~ 25560124 (+) True LOC103042327
XM_007258808.3 mRNA downstream 3318 25529404 ~ 25560124 (+) False LOC103042327
XM_022683205.1 mRNA downstream 41586 25567672 ~ 25579392 (+) True anln
XM_022683207.1 mRNA downstream 41586 25567672 ~ 25579392 (+) False anln
XM_022683206.1 mRNA downstream 41586 25567672 ~ 25579392 (+) False anln
TU270302 other upstream 3193532 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 4033568 21358464 ~ 21383000 (+) False LOC103037930
TU269957 other upstream 4613678 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 5327581 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 5338273 20053051 ~ 20078295 (+) False fndc5
TU271111 other downstream 91842 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 91948 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 91948 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 1084343 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 1758134 27284220 ~ 27284567 (+) True G200104

Expression Profile