RNA id: XM_022683002.1


Basic Information

Item Value
RNA id XM_022683002.1
length 4486
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC103023391
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 9339117 ~ 9348717 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgaaaaatttgaaataaaataatttttaaaaagttgtgtAATTCCATAAAAATTACACTTCTCTAATTGTTATGAATGGTGCCTGATCATGCTTGGGCTTCTGTTACAGCCAGTGGCATGTTTAATATCTAATAGACAGTAGAGTGAATTAACCAATCCTggattttctctgttttttgaaCTGCAGGTTCTACTGGGATTTGGTAATGCTCTTTCTGATGATGGGCAACCTAGTCATCCTCCCATGGGGCATCACCTTTTTTGAGGATCAGAACACGCCGCCATGGATGATCTTCAACATGGCCTCAGACACTCTTTTCCTGGTTGACCTGGTCCTAAATTTCCGCACAGGCATCCTGGAAGAAGACAACAGCCACGTCATCCTGGACCCAAAGGTTATTCGCAGTCGGTATCTGCAGGGctggtttcttgtagatttcaTCTCCTCCATCCCAGTGGACTATATTTTCCTGGCTGTGGACCTGGAGGCTCGGGTGGAGTCAGCAGAAGTGTATCGCACAGCCAGGGCATTGAGGATTGTCCGCTTCACCAAGATCCTCAGCCTGCTAAGACTTCTCCGACTGTCCAGACTCATCCGTTACATTCACCAGTGGGAAGAGatcTTTCACATGACATATGACCTGGCGAGCGCAGTGGTTCGAATAGTGAATCTGATTGGGATGATGCTCCTGCTCTGTCACTGGGATGGCTGTCTTCAGTTCATGGTGCCCATGCTGCAGGAGTTTCCTTCAAACTGCTGGGTCTCCAAAAACAACATGGTGAATGCCACCTGGGAAGTGCAGTACTCCTATGCCCTCTTCATGGCCATGAGCCATATGCTGTGTATTGGATATGGAGCCCAAGCTCCTGAGAGAATGACTGATGTGTGGCTCACCATGCTAAGCATGATTGTTGGTGCAACCTGTTACGCCATGTTCCTGGGCCATGCCACAACCTTGGTCCAGTCATTGGATGCCTCTCATCGTCAGTACCAAGAAAAGTACAAGCAAGTGCAGCAATACATGTCCTTTCATAAGCTGCCAGCTGACATGAGGCAGAGAATCCATGACTATTATGAGCACCGTTTCCAGGGGAAGATGTTTGATGAAGATAACATACTGGGAGAACTCAGCGATCCACTTAAAGAGGACATAGTGAGCTACAACTGTCGTGGACTGGTGGCGAACATGCCGCTGTTCGGCAATGCCGATCCCCACTTCGTTACTGTGCTCCTGACCAAGCTACGCTTCGAAGTCTTCCTGCCAGGTGACACCATTATTCGTGAGGGCACCCTTGGACGAAAGATGTACTTCATACAGCATGGCTGTGTCACTGTGATCACCCGtgaaaagaaggagaagaaactTAGTGATGGCTGCTACTTTGGGGAGATTTGCTTGCTGACCCGTGGCCGCCGCACAGCTAGCGTGAGAGCTGACACTTACTGCCGACTGTATTCTCTCAGTGTGGACAGTTTTAATGAAGTTCTGGAGGAGCACCCCATCATGAGAAGAGCTTTTGAGAGTGTTGCCATGGACCGCATGGACCGCATGGATAATAAAGTCACGCCCAACATGTCCTTATGAGTGGGCACAAACTGAGGACAGTGACAGGTGACAGCAACTCACAACTTAAATTAAGAAGCATGGATTAAGGACATGGTTTGGAGGGAAGGCAAAAAGCTAAAGGCGATGTCTTGAGAATgccattaaatcattttaattgtcCCGTTTTGCCCCTCACATACCATGTTAATTCTTTGCTACATTAACTGTCTTAATTGTTTATTGTGTTCACTAAAATACATTGGACACCATTGAACTTTGAGCTTTGGAGGCCCATGCTCCAAGTGCCAGCCGACTGAAAGGTTTTACTGACTGAAGGCGTTTAGCTGATCTGGATCTGACAGTTACCCTTAGAAGTCAagacttattttatattttcttaaaatattacaatgtatttatgtttatgcaGGTGTATGCAAGGTTTGGGCTCTCTGGACACTTTCATGCAACTAACACAGTGAGAGATTTGGGGCTTTATTAGGTTAGGCCTTaagtaggtaaaaaaaatatatctgtcTTTTCAAACTGTGTGCTTTTCAGATGGTTAATTGTGCAACTCAAAAGCATAGGCTTCTTTAACTGATACCAAGAGGAATGCCAGTTAAAGGGAACTGTGGAAGCTCTGGCAAGATTTGAAAGACCAATAAAAATCTCAGATAGATCTTTTCATATGCTGCTCAGTAAGGCAAAGCAAACCCTTTATATAATAGCAAAATAGCAAAAACCCACTGCAGGTTGGTCTCTGTGCAAAAGATTTGTGGACATTGATATGTTACTAAAGTTACAAAAGATATGTTCagatataaaaagaaagaatcaAGATCACCTTGGTAAATGTAATGTTGGGGTGGATCCATGGCATTTTGTGCTTTTACAAAAGTACAATGATCCATAATATACCTCAAAATCCACTATAcattaaatatcaaaattagggctgtcaacattaatgttttaatgaatgcaGTTATTCTggaaactttactttaactttaacacgtttttttttttttaagaccaaTTAATCATGTGACAAAATTGATAGAGCCTGGTGATgcattagcagttttatttagatATATAACACAGCACCACTTActgttgagttcagaaggtagattatcttttatttatgctgacgtttatgctttctctctctcttacactcatCTGGTCatgcacacataaacacacacaacaaagaCACACTTTTCCTCTTTTCAAGCTGTTGAAAGTGGAATATGAAGCTACACAagcatttattttctccattaaaactctcagttaaactcacaatattctaaaaaacatcaaaatcaCCCTGAGAAATTAATGATTcatgatgtttataattttattcatgatttttaaaagaataCTTTTGggattaatactttattttttttagggatCAATAATACAAATCTAACTGTTTCTAACACAGTttcttttattcatatttaaatacccattataAAAAGCTTAGTCTTACAGaataaaaagtgtgattaatcatgattaatcacagatttttttataattgattgacactattaatttaaaatacaagCTGACTAGTTAGGAAGACACCAATCTGGCAACAAAAAAGGTAACTTTTAAACTAGGATTTATGGCAATGTTGTATTTCTTACTGTGTACAATGTTttgtagatattttttttttattgtggaaaAAATGTCAGTTAGCCAGGGCTGCCCAAACCTTTGCAATTGTACATGTTCTTTCAACAGAAAGACTATGCAAATAATAACTATCAActttaaatcatattaaaatgtcTTCTAATCTTCGCATGTATTAAATGTAAGGTTgaatattgttttgttattgctgGCAATAACTGTGACTTCTAAGGGTTAAACAGTCAGAAAACAAAAGTCACAAACTACACGTTACTTGAAACTGTGTCTGGCACTGAAATGTATgtgtatgagttttttttatgcggGTGCACAGTGATGGAGTTTCACTTTACCCTTTCATTTATGCAAACTCTCACCTAATGTAAGAGCAGCACATACAGTATTACCAGCCTTCTGTTACCCAGGGAGGTGAACAATTTTAGGTGATTTAATTTGTTGGATGGCGTTTGATAGTTTGTAATGGTTGGTATTGTATTGTTTCCAAGCTGGCAATCACCTAAAAAATAAGGGTTGTTTGCATTTCTAGGTTGCCATTCGTATGGAATCACATTTTAAAGAACTGgtgctctccatgtatttgtAATATGCATAACATGACACTTTCCTGGTTCTGCGATTACGGTATACACATAGTAGTTACATAATAATTCCCTGTATAAGGTGAGTCTGAGTGTCCTGAAGAGCTTATCCTCACTCAAGTATTATACCATGTGATTCATATAATCACAGCTTAGAATAGTTAAACCTGTCTTCCCACAAAACCAGTCATACGGAGTGCAACTTCACAATGTCAGACTGCCTTCGTGTTGTTTTAAAGGACTTGAAAAAGAGGGTAGAGTAGCTGTCTGTTTAAAGTTTGTCATAGGTgttcactacactacactacactatattgAGAAATATACTAGATTATACTACGGCTTATACTAGAAGACCAATAAGACTTAAGTTATATGTATTCATGGTGTCCTCTGCCATAAATATCTCTAGAAACACTTACCAGCATTACGCATAAAAGGTTCCcagattttaaagttaaatactACACAACCGTTTATATCATGGATTTAGTGAATCTATAGGCTCCAGCAAAAGTGAATGGGTTTGAGTTAATAACctaaaatgtgtgtaagtgcAATTGATTTTTAATACAGCATTGCTATTTTGCACACACTGATTACAATGTTAGTTAATcccttttttattgtattcagcCCAATGATTCAAATACATTATAGTCCTATTTAACTCTG

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266364 lncRNA upstream 298 9338069 ~ 9338819 (+) True G196317
TU266361 lncRNA upstream 407758 8931149 ~ 8931359 (+) True G196314
TU266330 lncRNA upstream 489491 8849360 ~ 8849626 (+) True G196286
TU266295 lncRNA upstream 535271 8803118 ~ 8803846 (+) True G196259
TU266293 lncRNA upstream 542731 8792633 ~ 8796386 (+) True G196257
TU266381 lncRNA downstream 29200 9377917 ~ 9427544 (+) False G196329
TU266382 lncRNA downstream 29200 9377917 ~ 9427544 (+) True G196329
TU266376 lncRNA downstream 33033 9381750 ~ 9382549 (+) True G196327
TU266492 lncRNA downstream 258805 9607522 ~ 9608821 (+) True G196396
TU266504 lncRNA downstream 352023 9700740 ~ 9704709 (+) True LOC103046684
XM_007258225.3 mRNA upstream 467918 8851232 ~ 8871199 (+) True LOC103021572
XM_007258230.2 mRNA upstream 561406 8753398 ~ 8777711 (+) True LOC103022608
XM_022682999.1 mRNA upstream 561406 8756943 ~ 8777711 (+) False LOC103022608
XM_007258232.3 mRNA upstream 599219 8694546 ~ 8739898 (+) True LOC103023428
XM_022682998.1 mRNA upstream 694050 8507235 ~ 8645067 (+) True LOC103040794
XM_007230568.3 mRNA downstream 185760 9534477 ~ 9539304 (+) False mrps21
XM_022683013.1 mRNA downstream 195983 9544700 ~ 9559107 (+) True LOC111195503
XM_022683011.1 mRNA downstream 211846 9560563 ~ 9590910 (+) True LOC103027509
XM_007230566.3 mRNA downstream 254611 9603328 ~ 9638916 (+) False LOC103046991
XM_007230567.3 mRNA downstream 293460 9642177 ~ 9677820 (+) True LOC103047595
trnav-cac_44 other upstream 387552 8951493 ~ 8951565 (+) True trnav-cac_44
trnav-aac_54 other upstream 387742 8951303 ~ 8951375 (+) True trnav-aac_54
trnav-cac_43 other upstream 387932 8951113 ~ 8951185 (+) True trnav-cac_43
trnav-aac_53 other upstream 388122 8950923 ~ 8950995 (+) True trnav-aac_53
trnav-cac_42 other upstream 388312 8950733 ~ 8950805 (+) True trnav-cac_42
TU266464 other downstream 185712 9534429 ~ 9539300 (+) False mrps21
TU266466 other downstream 185712 9534429 ~ 9539648 (+) True mrps21
TU266461 other downstream 185811 9534528 ~ 9539300 (+) False mrps21
TU266463 other downstream 185811 9534528 ~ 9539471 (+) False mrps21
XR_002651679.1 other downstream 254610 9603327 ~ 9638916 (+) True LOC103046991

Expression Profile