RNA id: XM_022683028.1


Basic Information

Item Value
RNA id XM_022683028.1
length 1433
RNA type mRNA
GC content 0.55
exon number 7
gene id LOC107197050
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10536480 ~ 10539349 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCCCTCAGTTCTCCACTCACTCTCCTCTAGCCTGAGCAGAAGGGACCTGAATCTCCAGCAGCACCATGAACACCAGCTTCTCCAGCCGCAGCTTTGTCTCCTCCGGCGGGTCCATGAGGGCCAGTCCCCTGCTCTCTGCCTCCAGCGGAGCCCGTCTGGGCAGCATGAGGTCTGGCAGCGTCTACGGTGGAGCCGGAGGATCTGGGGTTCGCATCTCCACAGCCAGCAGCAGTGGAAGCGGCTTCAACCTGGCTGATGCCGTTGATGTGTCCGCCAACGAGAAGGCCACCATGCAGAACCTCAACGACCGCCTGGCCACCTACCTGGAGAAGGTGCGCTCTCTGGAGAAGGCCAACGCTGACCTGGAGCTGAAGATCCGCCAGTTCCTGGAGAGCAAGGCGTCCCCCAAGGCTCGTGACTACTCTGCCTTTTACGTCACCATCACTGACCTCCAGGGCAAGATCCAGCATGCCATCACAGTGAACGGTGGAATCTACCTCAGCATTGATAATGCCAAGCTAGCAGCAGATGACTTCAGAGTcaaGTACGAGAACGAGCTTGCCATGAGACAGTCTGTTGAAGCTGATATTGCTGGTCTGAGGAAGGTTCTGGATGAGTTGACCTTGGCCAGGTCTGACCTGGAGATGCAGGTTGAGGGATTGAGGGATGAGCTGATCTACCTGAAGAAGAACCACGAGGAGgagctCTTGCTGGCACGCTCTCAGATGGGTGGGCAGGTGAATGTGGAGGTAGACGCAGCACCACAGGAAGACCTCAACGCTGTCCTGGCTGGAATCCGTGAACACTATGAAAGCGTTGCCTCCAAGAACCGCAAAGAACTTGAGGCCTGGTTCCAGACCAAGACTGAAGCTCTGAACAAAGAAGTCGCCATCAGCACAGAAACTCTCCAGACGTCCAGATCTGAAATCACAGAAGTCAAGCGCACACTTCAGAGTCTAGAAATCGAGCTGCAGTCTCAGCTCAGTATGAAAGCATCGCTTGAGTCCACCCTCGCCGAGACACAGAACCGCTACGCTAGAATGCTCTCCGGCTACCAGGTACAAGTATCCAGCCAGGAAGAGCAGCTGGGGCAGCTCCGTGCTGATTTGGAGCGCCAGGGTCGCGAGTACCAGATGCTGCTGGACATCAAGACCAGACTAGAGCTGGAGATCGCTGAGTACAGAAGGCTTTTGGATGGAGAGACTGCCACCACTACTGCCAGCTCCAAAACATCAACCACTCGCAAGGTGGTGATTGTCACAGAAGAGGTCGTGGACGGCAAAGTGGTCAGTTCATCATCCTCCTCCACAAGTGAGACCAAATCTTCCAAGTGAGGATCCTCTAAACTCCAACTGAAATGAGGACCTCAAGCCCTATGAAGTCAATCCCCAGTGCTCATAGAGATCAATGAATAAAGAGGTTAAATATTGAA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07604 KRT1; type I keratin, acidic

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266776 lncRNA upstream 51715 10481407 ~ 10484765 (+) True G196619
TU266775 lncRNA upstream 66332 10469798 ~ 10470148 (+) True G196618
TU266723 lncRNA upstream 273101 10263037 ~ 10263379 (+) True G196573
TU266722 lncRNA upstream 274637 10261574 ~ 10261843 (+) True G196572
TU266720 lncRNA upstream 288214 10244141 ~ 10248266 (+) True G196570
TU266830 lncRNA downstream 88018 10627367 ~ 10628051 (+) True G196649
XR_002651681.1 lncRNA downstream 93006 10632355 ~ 10637265 (+) True LOC111195506
XR_002651682.1 lncRNA downstream 93010 10632359 ~ 10637265 (+) False LOC111195506
TU266917 lncRNA downstream 239801 10779150 ~ 10781295 (+) False G196686
TU266918 lncRNA downstream 239801 10779150 ~ 10781295 (+) False G196686
XM_015602245.2 mRNA upstream 18172 10515795 ~ 10518308 (+) True LOC103044360
XM_022683420.1 mRNA upstream 355248 10180453 ~ 10181232 (+) True LOC111195551
XM_007230555.2 mRNA upstream 475381 10059634 ~ 10061099 (+) False dpm3
XM_022683025.1 mRNA upstream 522183 9986807 ~ 10014297 (+) False LOC103044437
XM_007230556.3 mRNA upstream 522183 9987752 ~ 10014297 (+) True LOC103044437
XM_022683029.1 mRNA downstream 6227 10545576 ~ 10563252 (+) True LOC107197051
XM_007236498.3 mRNA downstream 30954 10570303 ~ 10573156 (+) True LOC103043362
XM_007236497.3 mRNA downstream 54386 10593735 ~ 10598163 (+) True LOC103042831
XM_022683035.1 mRNA downstream 71125 10610474 ~ 10626417 (+) False LOC103040599
XM_022683032.1 mRNA downstream 71465 10610814 ~ 10626417 (+) False LOC103040599
TU266794 other upstream 44379 10491546 ~ 10492101 (+) True G196633
trnap-agg_20 other upstream 308677 10227734 ~ 10227803 (+) True trnap-agg_20
trnap-agg_19 other upstream 308986 10227422 ~ 10227494 (+) True trnap-agg_19
trnap-agg_18 other upstream 309304 10227106 ~ 10227176 (+) True trnap-agg_18
trnap-agg_17 other upstream 310780 10225630 ~ 10225700 (+) True trnap-agg_17
TU267213 other downstream 862845 11402194 ~ 11417588 (+) False mrpl24
TU267214 other downstream 862845 11402194 ~ 11417588 (+) False mrpl24
TU267531 other downstream 2176019 12715368 ~ 12774496 (+) True G197106
TU267630 other downstream 2350009 12889358 ~ 12928524 (+) True LOC103029421
TU267673 other downstream 2417511 12956860 ~ 12964344 (+) False s100a14

Expression Profile