RNA id: XM_022683033.1


Basic Information

Item Value
RNA id XM_022683033.1
length 7140
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC103040599
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10610474 ~ 10626417 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAATGGTGTGGTGGTGTTAGCTAGTGTTGAGGCTCGGCCGGGCTCAGGGCTGCTGTCTgcctgctctctctgtgtgtggaGCTCCTCTCGCAGCCATTGTGCGCAGTGACGCGGCGAGGCGTCTGCAGCTCAGCCCCATTCAGCCTGCAGGAAGTGAGCGGGCTGGGCGAGAGAGCACGGCGCTCTGCTGAACCcggggaagaaagagagagagggaaaaaaacaggagaaaagatTATGGCGAGCGAATGAACTCCTCCTAAAACATTCACGTATATTATACCGTGCTCGAATTTCGCAAAGCATCGTCGAGAAGCTCGGTTTTGTTGTTGCGCGCCTCCGCCGCCCGGGAGCTTCCAGATCTGTGATGCACGGTGTCGAACCCCAGTGATTTGACATGGATTGTGCGTGTGGGTTTGAGGAGAAAgttaaaaaTTCCCATCTGGTGCCCTACATCTGTCCAGACGCTCTCTGAACTGCTGTGACCGAGTGGATTTGAAAGGCTGATTGGAGAGAATATCTGCCTCCCAGGTTTCCGGGGCCACCTGAACAGCAGCGGAATGATGACGGGACACGACCACGACAAGCAGAAATCTCCAGGATCCGAAGATGCTTGGGACAGACCCTTCAAATGTGATCAGTGCGACAGGACCTACCGACACCACGGCAGCTTGGTCAACCACAAGAAGTCTCATCAGGAAGGCACTTACAAGTGCGCCATCTGTTACAAACAGTTCAACAATTTGGCAGCCCTCAACGCTCACGAGCGCACTCATTCAAAGTTTAAACCCCCTGGAATGTCCATGGGAAGCCTAGTGCCTGAGACCTCACAACCTCGCCCCCCTGCCCCCCAAAGTGATGACATGGCAGCGTGCTTTTGCCATCTATGCCAGGTTTCTTTGCCCAATAAGACTGACTTTCAAGAACACATACTGTTGCATAATGCTGCGTCCTCTTCACTGGGGCTGACACGTAGTTTCCCTGGGATAGTGCCTCACAATCTCAGCACTGTCCGCTCCCCAGCAGTTAACCCATACACCCCTGCTCTTGGCGACTCTCTTCCACTTCCTCCTTTACCTGATAAACGTTATGATCAGATGCTAGGGCCTCCTATCAATACTGCAGTTTACACCTGCGCATACTGTGGGTCTGGACAGCCTGACTTGGACAGTCTCAAAATTCATTACCTGACCCACGAACCTCACCCCTCATCACACGCTCAAGAGGGTCCCTCTGTTCTAAGCTCTGGTGGCCTCGGGTCCAACTCCCAGCCATCTGTGTCCTCACCCAGTGGGGAGTCTAGATCACAGCAGTCGTCGTCCATTGATGACGCCGACCGCAGATTCAAGTGTCAAGAGTGTGGGAAAAGCTATCGTCACGCTGGGAGTCTTGTCAACCACAAGCGCTCCCATCAGACTGGGCATTACCAATGCACTATTTGCTGCAAGGAGTATCCACACCTTGCGGCCCTCCAGAGTCATCTTCGCAGTCACAAAAGTCGCCCAGGCTCCCAGGGACTAAACTCAGAAGGAGACTGGCTATCATCTGAGCCCATGACAGGACTTGACTCCCAGCAAAACTTTGTGCATTCACAGAATCAAGAGAATGGCACCACAACCCCCATCTCCCTGCCTGGCAGTCTTGGTGATGCAACCCACTTTGTTTCCGAGGGTGGCCATAGCAGTGGACTGGATTCACTCGAGTTCCACGACCGATTTGATGGTTCACTGGCTCAGGGCAACTCTGGCCACTCTCCTCTTCCACAGAATCATCGCCAGGGAGACAGACACATGTGCTCAGACCAGGGCAACATGTCTAATGGTTACATTGGCGGCATGGGCTTCCACAATTCAGGGGGTGCCTCCTTGCCAGCTGGTAGTGCCAACCACAAAGAAGGCAGCCGCCAGCGACGTGGGCAAGACCAGCACTATGGAGGAGGTCAGGGGAGTGGCAAGAGAATGGAGAGCAACAAAGATGACGACGGAGAAGTCTACCAGTGCACAGTCTGTGGGAACCATTATGCTAGCCTACGGGCTCTTCGTAGCCACCTGCGTAGCCATGGGGTGAATCAAGGTGCAGGGCCTTCTTCTGCCCTCTCGCCTGCAGGTGAGCAAGAGTGGAGAAGGCGACAAGAAGGTAGTGAGTCTGGCCTAGAAGTCTGTAATATCTGTGGCCAGAGTTTTACCAGAAAGCAGGATCTACTCAATCACCAGTTAGTCCATGGACCTCCCCGGCCGGATGGATCTGTGCAGGGCTTGGGGGGCAACGTCTCTAATGCTAATGGCAAAATGGATGGAAGGAACCACATTTGCGTTGACTGTGGCATGTTCTTTGCAGATCGCCATCACCTGATCACTCACCTGTGTCCAGGCAAGGCAAGAGGCGGAGCGCTGAACAAAAACATGAATGGAGCCAAAGGGATGACTGGAGGTGCTGGGACCAGCAGTGGGGTGGACCACCGGCAGATGGCCGATGACCGTCCCCACAGGTGCGACCAGTGTGGAAGAGGTTACAGACACCCCTGCTCCCTTCTCAACCACAAGAAATCGCACAAGACTGGGGTCTTCCGCTGCCTTGTCTGCCAAAAACGCTACTACAACCTGCTGGCTCTCAAGAACCACCAGAGGACTCATTTTGACTTAAAGAGGCACAAGTGCGAAGAGTGTGGGAAAGCCTTCAAGATCCAGAAGCAGCTGATCAATCACCTGCGTCTACACGAAGAGCACAGAGCTAAGACTGGGGTCCGTGATCAACGAGGCCAAAGCATGAATCAACACAACGGTGGGCGCTATGAGGGGGGGCCATCCCAGATGCAGCCAATGAGGATGGGAGAGCCACAAAAGATGCAAAACCAACAAATGGCACCCAATTATGGCCAACCTCAAGGCTACAAGAAGCCATACGCTGGGGCGAGGGCTCAGCAAGTGGATGATGGCAGTGGCCGGCGCCCCTTTGCATGTGACCAGTGTGGACGCACTTACCGTCATGCCGGCAGCCTGGCAAACCACAAAAACCTGCACAAGATCGGCGAGTATCACTGCAATGTCTGCAACTCCACCTACCCAAACCGTCTGGCCATGAAGAACCACCTCCGCATGCATTTCGCTTTAAAGAAGTTTGCCTGCAATGACTGTGGCAGGGGGTTCAGAAACCAGAGGCAGCTCGAAACGCATACCAGCAACCAGCTGTGCAAAGATCTTCCCGGTCCCAGCATGCCACCCCCGCCTCCTCCCAGCTACGAGTGCAGCGGATGCTCTGATCGCTTTTCCACTACAACCGAGCTAACTTCCCACAACTGCAGCGCTCAGCTCCCTTCCTCTTCTGCCTCTATGAATAGTTCCACCATGAGCATGGACACTGCTGACCTAGGCTCCCCTGAGCGTGAAGAGCGACCCTTCACCTGCGACCTTTGCGGCTGTTCCTACAAGCATGCCAGCAGCCTGCTGAaccacaagaacacacacaagaCCGGCAACTTCAGCTGCTCCTACTGCGACAAGCCCTACACCAACTACATGGCGCTGCGCAACCACATGCGTATCCACACGCAGAAGAAGCGGCACATCTGCACCACCTGTGGAAAGGCTTTCCGGCTGGCTCGTTTCCTCCGCAACCACCAGAGGGTCCACGAGGAGGGCCACACGCGCTTCGGCTGCCCCACCTGCGGGAAGAGCTTCCAGGGTCGTTCTGGGCTGGCCAGGCACCGCTGCGGGGACAACCAGGTAGGCATCGAGGGCAGCAGGAAGGCCACTTCAAGCACAGGAGAGGGAGAAGAGTGCCGGTTCACatgtgagcagtgtggcCGTTCCTACCGGCATGCCAGCTCTCTCCTGAACCACAAAAACACCCACACAGTAGGCATCTACCATTGCGCCGTGTGCCTCAAGACCTATTCCAACCTGCTCGCCCTCAAAAACCACCGCCGCATCCATTCGGAGACACGAAGGCACCGCTGCCCTGAGTGCGGCAAGGCCTTCCGTGTCTCCTCCCAACTCCAGAACCACCGCCGCATGCACCAGAAGGAGCGCGAGTTTGCCTGTACACTGTGCCAGCGGAGTTTCCCCAGCCAGTCCAGCTTCCGAATGCACTTGCAGATGCAGCATGGAAGAGGCAACAAGTCCTCGCattaccaccaacaccaccagcagcagcagcatcaccaACCAATTTCGTCTGGAAGCTCTGACCTGGGCTGGGGCTCAGGACTTGATCTAACTTTGATGCAGGCCCAAGGACTACACCCTAACGATGTGTCCAAAACATCTCACCACGGTCCCAGTTCTAGTAGATCTTCCGGACACCAGCAGCAGGGCCGCAACGAGACGGGCCGCAAGGCACACGTGTGCGACCAGTGCGGGCGAGGCTACAGGCATGCCAGCTCCCTGCTGAACCACAAGAACAGTCACAAGGCAGGTACCTACTTCTGCAACCCCTGCCAGAAGGAATTCTCCAACCTGATGGCATACAAAAACCACAGACGCATTCACACAGAACCCAAGCGCTATCAGTGCCCGGACTGCGGCAAAGCTTTCCGCGTCTCAACGCAGCTCATCTGCCACCGGCGTATTCACACCAAGGAGAAACCCTTCTCGTGTCAGCAGTGTGACAAGCGCTTCTCCAGCAAGTCCAACCTGCGCCACCACCAAAAGGTCCACTGGAACAGCTCGGCGCCCACCAGCACCATCTCCATGGGCGCCACCAGCTTCTTGGGTATGCCCACGGGCCCCTTTATATAAGTTAGTGGTGGGAGTTGGGGAAGAAGGACTTGTTTTTGTTGTGGAGGGTTTAATGCCAAGGTTTCCTGAGGTGCCAAATAGTTATCCCATGCCCCATCATCTTCTCACCTCATCTGCAGTTAGCACAGTGTGTAAGGCGTGGCTGTGAGTtattcctcctttttttttgttttgttttctttcgtTGAGCAGGTTGTTGTCTAGGTAAAAAGGACTACCCCTCCATTTTCCCATATATTCCCTCGAGACACTGAATAAAACAAGACTCGGTACACGGACCATTTTACATTAAGAAGACAGTCTTAGGTTGACGTGGTGTACAGGCTCCTTACCTCTGTTTTACACACTGCGGTTGACCTTACTTGCATTCTGAAGTTCACTTGATTTACCcaccctctgttttttttttgtttttatctttttaaccTACAGTGATTATTTTTCGCTCAGTGTAGCATAAACAGCTTGAAGAATAACCGTTTTAAACTCAGTTTAACTTGAACTCTTGCTTGATGGAAAACTACATTTCatgtcaggttttttttttttaggtcttttTTAATTACGCCACAGTGAGCAGGATTGAGGGGAATGAATTAGACCCTTCCAATCATTCATACACCACCCTCAGTGTTGAGATCAGTACAGGCAAAGTGGTTAGTTGTGCATCTGAAATCATATGAAGACTCATTCATCATTTCACCTCCATCCTCCTTTTGGTCACCTTGCAAAacattcaaaatgttttttatattatacaaaaGTCATATTCACGgtcaaattacaaaaataaaaaaatataaatattaacagtaacagtaaaaaacaaacaaaaaacattgagCAACTTGTATGTGTAGGAGCTAGCTCTGACAGTATATAGATCGTAATTGAAACTGATTGCAGTCACCATGTTGTGTAGAACTCTCAagggtgttttgttttttttgtttttttgtttctcccATCTGATGTTCTCTAATATTTTCTAACTTGTGTGTTTCTTGCAGCACGAAGATGAGCTTCAAACCTTATTAATCTGCAGATGACAGCATTGCGCTATATGGGTTCACTTCTTtgcagcattgtttttttttttttttttttttttttgcatatttttgttcttttttttttgcgtgtTGCCTCCTGTAAGTTTCCCCTCGAGATGTTGCTCAGAACCGTTATTTTTCAAACACCGCACCTGAGTAGCTAGTGTATAGAAACAATAGGTTGTGCTTTtgaggaattaaaaaaaaatatggggaaaaaaaaatgaaaaagcaaaATGATGTATATTGATAGGCTTGTACTGGCATTTGGTTTTAACTTGTATTGTATCGTACTTCTGACTGTATTATTTACAGGAAGActtttatataaacaaaatgacaaaaaaatcactgtagtatgcattttatttatattaaccctTATAACCGAAGACGCTAGTTTTAGGACCTCCCCGTCGTAGGAGCTCTCTGTTCCACACATTTCCTGCTCTTTTTGTTTTGACCCGTGAATCTTTCATATATGATTGACATGGAGTCGAGGATATGACAGGACTCCCAAAGAACACTCATTTTAGTGACTGTAATCTtcccttctctttttttattttattttattttatgtttccttttttggttaaatgcttTTAAACCCCTTGTACAATAGACAGTGagctgtaacaatgtgtgtttCTCCGATTGCAGTATGATGAGTGTAAAGATATCACTGTATTGTTATGCCTTCCTCACGTGATGTCGTGAAAGTCCCGCCCACCCTCTGACCCTTCCCCTTTTCTCACATCAAGATTGGATGTGCCTCTGTCTCGTGCTTTTAAGCTCACACACTtttaagggattttttttttttttttttttgtgaacattaCAATCACTTTGGCAATCTTATTTTcacatatttgttttgttacatcCTTACAGTATCCCTTGTATTTATTAgtatccttttttatttaattgcatttgACTATTTGAAGCTCATTGAACCTATATTACCAGGGAGCACTGGTGCTAGTAAGTCCATTCTATTTTGAGTGAAAGTGAAGTTGTAAGGAAAAGTGATATGACTAGAGCACAGGAAGAAgattgtgtatatatgtatgttccTATAACTTGCAATTAGGGTGAAAAGAAGCTAAACTGTATAACAAACCTTAGGTGCATTCATTTGGGAAGGATTGACTTATATAAGAATTATTGTAAGTTtaacctttttgttttttgttttccctcTTTCATGCATATATATGTACTGCTGActatacactttttttaaactacattttGATAATTCATTTCCTAACAGAACTTGTTTGGATTATAACCTTAATGCTCTCaagtaatgaaaataaatagctgaaaaatcataattaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266776 lncRNA upstream 126049 10481407 ~ 10484765 (+) True G196619
TU266775 lncRNA upstream 140666 10469798 ~ 10470148 (+) True G196618
TU266723 lncRNA upstream 347435 10263037 ~ 10263379 (+) True G196573
TU266722 lncRNA upstream 348971 10261574 ~ 10261843 (+) True G196572
TU266720 lncRNA upstream 362548 10244141 ~ 10248266 (+) True G196570
TU266830 lncRNA downstream 950 10627367 ~ 10628051 (+) True G196649
XR_002651681.1 lncRNA downstream 5938 10632355 ~ 10637265 (+) True LOC111195506
XR_002651682.1 lncRNA downstream 5942 10632359 ~ 10637265 (+) False LOC111195506
TU266917 lncRNA downstream 152733 10779150 ~ 10781295 (+) False G196686
TU266918 lncRNA downstream 152733 10779150 ~ 10781295 (+) False G196686
XM_007236497.3 mRNA upstream 12651 10593735 ~ 10598163 (+) True LOC103042831
XM_007236498.3 mRNA upstream 37658 10570303 ~ 10573156 (+) True LOC103043362
XM_022683029.1 mRNA upstream 47562 10545576 ~ 10563252 (+) True LOC107197051
XM_022683028.1 mRNA upstream 71465 10536480 ~ 10539349 (+) True LOC107197050
XM_015602245.2 mRNA upstream 92506 10515795 ~ 10518308 (+) True LOC103044360
XM_007236486.3 mRNA downstream 114470 10740887 ~ 10771033 (+) True LOC103040077
XM_007230756.3 mRNA downstream 169705 10796122 ~ 10803111 (+) True LOC103032369
XM_007230758.3 mRNA downstream 192620 10819037 ~ 10838287 (+) True LOC103032890
XM_007230762.3 mRNA downstream 238321 10864738 ~ 10878687 (+) True utp18
XM_007230767.3 mRNA downstream 255358 10881775 ~ 10902503 (+) True LOC103035340
TU266794 other upstream 118713 10491546 ~ 10492101 (+) True G196633
trnap-agg_20 other upstream 383011 10227734 ~ 10227803 (+) True trnap-agg_20
trnap-agg_19 other upstream 383320 10227422 ~ 10227494 (+) True trnap-agg_19
trnap-agg_18 other upstream 383638 10227106 ~ 10227176 (+) True trnap-agg_18
trnap-agg_17 other upstream 385114 10225630 ~ 10225700 (+) True trnap-agg_17
TU267213 other downstream 775777 11402194 ~ 11417588 (+) False mrpl24
TU267214 other downstream 775777 11402194 ~ 11417588 (+) False mrpl24
TU267531 other downstream 2088951 12715368 ~ 12774496 (+) True G197106
TU267630 other downstream 2262941 12889358 ~ 12928524 (+) True LOC103029421
TU267673 other downstream 2330443 12956860 ~ 12964344 (+) False s100a14

Expression Profile