RNA id: XM_022683075.1


Basic Information

Item Value
RNA id XM_022683075.1
length 3414
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC103042102
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13301895 ~ 13319691 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCGCTTGGAAGCGAGCAGAGCTGAGAGGAGTCTGCAGAGCGGAGGACAGAGAGAGCAGCCGCTGCTTATAGCAGGAGTTACTCAAACCTgtgatattgtttatttatctgtgtGACTGAACGGGTTTCACGGTCTGTCCCCTCCGAGGCTTTATTCAGGGCAGGCAGGCGATGCTGGAGGCTATAAAAGTGACCGAACGCCTCCACTGGCCCGAGACAGAGATGGCTAAGAAGTGTGTGTTGAGTCCGATGGAGAAGCCGCTGAGCCCTAGCCAGCTGTACCTGGAGCACTGGTCTCCAGGTGTGCTAAAGGACCTGTTTGGAACCAGTAGCTACAATGTTATTTTGCAGAACGAAGAAGAGGAACAACTCAGTCCCAAACACTCCCCTTATAGACGGCCCAAAAGAGCACAGCACCTCATTTCCACAGCCTCGAGAAAGACTGGTGGGAGGCCTGTAGTGTTAACCAGGCCCAGAGAGGGATACAGGAACGTCAGCCAGTCACAGCTCTTCTCCAGCAGCACTCGCTTTGGGAATAATATCACAGTCCTTGGAAGTCCCATTGGATTGACCCCCCGCCCAGTCCCCAGACCACAACGAAGTTCCCAGGCAAGCTCCTCTCGAGTCAGACTACCTCTGCTGGCCAAAGCAGGCTCTGTGAGAGATTCTGAAAACTCACTGAAGAAGCTATGCATCCTCACAGCCATAAAGCCATCCAACGTGGACAGTGAGAAGACCCGCTTTTTCAAGTCAGACTTCACCTACAACCCCCAGTTTGAGTACAGCAACCCGGTGGCTCCACAGGTGCTGGAAAAACACAACAATGCTTCTGACCGCTTCCTCACACAGGCTGTGCGAATCATGGAGCTTGCGCTGCAGAAGTACGGGAACTATGAAAAGTTTGAACAAGCCACTGGAGGGAGCCTGCTGACCAAGAGCCGAATCTGGTCCCATGTGAAGAAGTACATGGAGAAAGAAGGCTGTGTGGGGGAGATAGTGGTGCACTTGACGGATGACCTGCTGTCCAGAGCCTCCATGACTGTAGTAAATGGCAGACCAACACTGACCATAAACATCTCCACAGCCAGAGAGCAGTGGCTTGAGGGAATGCTGAGACACGAGATTGGCACACACTACTTCAGAGGCATCAATAACAGCCAACAGCCGTGGAACAGCGGGGCAGGGAGGAAAAAGCTGGGCCTGAGGCCTTTAAACCCCACAGAGGAGGGTCTGGCCAGTATCCACAGCGTCCTTTTCCGCAGAGACCCCACACTGTGGCGAGCTGCACTCCTGTACTACACCGTTTACCAGGCCAGCCATATGAGCTTCTCTCAGCTATTCCGCGACCTGGGACGCTTCGTCCACGACCCAAACACCCGCTGGGACTACTGCGTCCGGTCCAAGCGAGGTCAGACAGACACCTCACAGCCAGGCTGTTTCAGTAAAGACCAGGTTTACTTGGATGGAATCCTGAAGATcctgagacacagagagaagatTGATTTTCAGCTCCTTACTGCACTGGGCAAGGTGTCCTATGAGGACGTAGAGCGGCTGAAGGGTTTGGCGGTGATGGAGCATGTGCGTATCCCTCACTTCCTGCAGGATCAGAGCCGTTACTCTGAGCAGCTGCAGAAGATCATGGAAGTCAACCAGCTAACAGACGAGGAACTCCGTATGCTCATTTGAGCTCAGTCACACCCTTAGAGCCAACCTCGAGCTGACCAATATAAGCTGAGAAATCTGACACGTATCCTATTGTGGCAAACCCTGCATCTACCCAGCCTACGAGTGATGCACTTTTAACCTAAGTGTACTTTAcaccctgtttttttctgtccaaAGATAAACATATTGCTATTTCTGTGGTGTTTTGCTGTCCTTGAGGTTTAGGTAACAATGACATTTGACCTGCAGGTGaagacaaataaaacacaacacagcacagcaccacCTGCATGCCATGCACAGTAatacacaattttttaaatcCAGTGCTGTAAAACTAGCGGGAGGCTAAACGAGTGCCAATTTTTCATCCATGTGCATGCctgttctttatatatatatatatatattatatatatatatatatatatatatatatatatataatatatatatatatatatatatatactttaactATATGCTACTTTCTGTGTTTGTATTAGAAACTGATAATCAGCAGATAAACAAATTTACATGTTTTTCCTTGTTTGCATAAAGTGAGCGTTAAGTGATTTGTGCTTTATATATTAAGCTTCTTTTGATTTGCACTGAAGCTACATAAAAAATGTAGCTAACACGTAATGGAAGTAATAGTATGACACAATATCTAAAAGTATTTATATGTTGAAAACTgaaatttacattgtaaatgtggGGAGTATTTGGAATGCAGCCAGAAACATGCATGCAGCTTTTTTCATAagaatcttgtttttttctcccaaacaacactgaaaacactgatTATTCTTAAATGGAAGGCTAAaaccattacttgttagctacattagcttcagAGGTCCCgtgcaaaactaaagaaacagaCTTCTGACACAAAACAATGTCTTGGCTGTTTGgccatttgtttttatttttttaccacacCGTCGTACTATAAAATAAGGTTAAATTAATTGTGAATACTGATAAAAAAAGCCCAGTTTAGTATTGATGTAGAGTATTAAACTAAAGCTCCTAGAGATAAATGACAGTTTATATGTACACCTTATTTGAAAACTTTAAACAGCATTACTAAAATGTGCTTTCAGACTACTTAAGCCAGAAGATTTTAAGACCGTTAGAgactaattattattgtttaaaaaccttttttatgaAGTGGACATCTTGTTTAAGCACACCAGCGGTTGTCACCAGCATGCCTGCTGGGACCCATTCTTGCACATATTAAACGTTAAGCTGCTCTTTTACCAGCATTCTTTTGTAGACTAAGGTTTTCCTATTTTGTATGCATGGATTTTGTGTTAGAAATTGCAATCCTTCAATGAACCGCTGTTTAGTTTTAATGTTCTGTATTGAGGACTGTATTCTGTACCAGTGCAGTTGTGTATTACTCTGGATATTTTAACTAAACTCTTCTAGATTGTTGGTTACTAAGACTTACTAAGTTTTCTTTACTGACACTTTATGGACTGGGAATCCTCTggggagagggaaaaaaaaggaaacaaatccACGCGTGCATAATGCGTGGGAGAATAAAGGTGCTTTATTCTGTTTTCATTTAGACTGCATACACGGACTATAGTAATAACCCACATGGTAGTATCATCATATCTAtgtttataaacatgtatatttatataccactgtttcactgtgtttctcttttatttgaaaaaagaaacataacTGTGGAATAAACGGACAGAAACAATTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267827 lncRNA upstream 17378 13281682 ~ 13284517 (+) True G197325
TU267828 lncRNA upstream 18773 13281682 ~ 13283122 (+) False G197325
TU267812 lncRNA upstream 61722 13237460 ~ 13240173 (+) True G197317
TU267791 lncRNA upstream 114041 13162293 ~ 13187854 (+) True G197305
TU267796 lncRNA upstream 157195 13143983 ~ 13144700 (+) True G197309
TU267852 lncRNA downstream 4695 13324386 ~ 13328709 (+) False G197334
TU267842 lncRNA downstream 58356 13378047 ~ 13438504 (+) True G197331
TU267843 lncRNA downstream 58356 13378047 ~ 13382373 (+) False G197331
TU267846 lncRNA downstream 58356 13378047 ~ 13382373 (+) False G197331
TU267860 lncRNA downstream 94669 13414360 ~ 13473071 (+) True G197340
XM_007254725.3 mRNA upstream 3016 13289714 ~ 13298879 (+) True chtop
XM_007254718.2 mRNA upstream 185924 13114501 ~ 13115971 (+) True LOC103032168
XM_022683071.1 mRNA upstream 189842 13099037 ~ 13112053 (+) False LOC103031854
XM_007254732.3 mRNA downstream 119801 13439492 ~ 13447223 (+) True LOC103036187
XM_007254733.3 mRNA downstream 135012 13454703 ~ 13463236 (+) True LOC103036495
XM_007254751.3 mRNA downstream 143608 13463299 ~ 13468103 (+) True LOC103042421
XM_022683083.1 mRNA downstream 340196 13659887 ~ 13666328 (+) True LOC103043039
XM_022683084.1 mRNA downstream 340196 13659887 ~ 13666328 (+) False LOC103043039
TU267673 other upstream 337551 12956860 ~ 12964344 (+) False s100a14
TU267630 other upstream 373371 12889358 ~ 12928524 (+) True LOC103029421
TU267531 other upstream 527399 12715368 ~ 12774496 (+) True G197106
TU267213 other upstream 1884307 11402194 ~ 11417588 (+) False mrpl24
TU267853 other downstream 4695 13324386 ~ 13362658 (+) True G197334
TU268310 other downstream 1146728 14466419 ~ 14468882 (+) False tac1
TU268380 other downstream 1474729 14794420 ~ 14796728 (+) True G197665
TU268755 other downstream 3002312 16322003 ~ 16328158 (+) False ppp1r11
XR_002651696.1 other downstream 3025426 16345117 ~ 16359668 (+) True atat1

Expression Profile