RNA id: XM_022683099.1


Basic Information

Item Value
RNA id XM_022683099.1
length 6830
RNA type mRNA
GC content 0.49
exon number 19
gene id jarid2
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 15077544 ~ 15259664 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCGGCGCCGAGGGAAGAAAGAGAGCCTGGGTCTTGTTCATATTAGCGAGCCGTGGTGCCGGAGAGTTCGCTCATCGCCTGCTCAGTTCTATCGCTCAAGCCAGAAACGCGaccacattgtttttttacgtgtagatgttttttttatttttattttaatggttgtttaatatatttatttcgcAATAAGATGTGACTCTGgccgttaaaaaaaaacaacacacacggcagaaaaagagaaacaggcgTTTTAAcggttaatgttttttttaaaagccgGGATATGCCAGCGGTAGCTTATCTCGTGCAACACGCTAGTTAGCACGCTAAACAACTAATGGAAGTTATTGTTGATGTTTTTAAACTATGCTAGCGTCCAGCTTTCTCTGCTCGCTATGGACCGCGGAGTCGTTTTTGTGGGATTTTATTGACAGTGCTGAGCTGCAGAAGGAAGTTTAACAGCCGAGAGTGGGGGATTCCTAAATAACTACTCGTGCGAGCAGAGGCAAAACTCACACACGGGGATTTAAAtcgtgtttgtgtttttctttttttgtttttttccctccccACTGTTTTTTGGAGGTTTTGCACCGGAGACGAGGAGGAGACGCGAGAGACGACCAAATTCATGTGGCGATTCTTTCCTTAGGGACACACGTttgggattttctttttttttattattacattttttgcagGATGAGCAAGGAACGGCCTAAGAGAAATATTAAGAGAAATCTCAAGAAATACGATGACAGTGATGGGATCCCCTGGTCGGAGGAGCGAGTGGTGCGGAAGGTGCTCTATCTGTCGCTGAAGGagtttaaaagtgcacagaaaCGGCAGCCTGGTGATGGCCTCAGCGATGGAGCCAAAAACGGTGTCCAGCTGAATGGCTCTGGATCTAAAGGGGGACACAAAGAGGATGGCTCTCGTTCACAAGGCAATGATGGAGGCAGTGAGTACTGGGAGGACGGTGCAGCCAAGAAAAGACCCAGACTGCAAGCACAGAGGAAGTTTGCCCAGTCTCAGCCGAACTCTCCCAGCAGCACTCCGGTGAAGCTGAATGACCCCTCACTGCCCACACCAGCCGCACAGATCATTGACCTCTCCAGAAGAAAGCCCAAGACCGAGGATTTCCTCACCTTCCTCTGCCTCCGAGGTTATTCTGCGTGGCCAACTGAAGGCTCACCGGCATTGCCCAGTAACATGATCAACTTTGGCAGTTCTCAGGAGGAGGATGAGCTGGACGATGATGAAGAATGTGAGGAAGAAAAGACACCAAGTGTGGCGTCAACATCGTGCCAGTCTACACCCCGCAAAGGAAAGCCTCCTGGCAGACTGAATGGGCAGGTGTTTAACGGCCACACTAAGCTGATAAAGGAGAGGGAGAGCACGCTCAGGCCGAAGAGCAGAGAGCCGGTGGTGAAGGATCGCTCGGAGAGGGCGGAGACTCGAAGAGAGCACAGCCAGTGTACCAGTACCAGAAACCACACTGGTACCAGAAACCACACTGCCCACAGCCACGGCCTCAGAGGAGCGGCAGAGGAACTACGCAAACAGGTTTCCAAAATGAACGGCCTTTCACGACTGTCTACCGCCGGCGCGAACACAGCCGCTGCCAAAAAGCCGAAGGACTACCGGCTGCCGTCCAGAACTGTGAAGTACACAGCCACCGTGACCAAGGGCCACGTCACCTACACCAAAGCAAAAGGAGAACTGGTGAAGAAAGCCAAACTCAACCACAGCAGGcactcttctgctgctgctgttggtggCGCCCATAAAGCAAACAGCACCAATCAACACCAACCAGCCAGCAACGGCCACGGCTCCCAGCCCCCCCACTCAGGAAAAGCCCAAAGTAGCAATGCAAAAACCCGCAGACAGGTGCTATTATCTAACGGGGTCCACAGCGAGGCCAACACCCGCTTCAACTGCCGGCTGAACGGCCGCCACAGCAtcaaggaggaggaggacaaaGGACCGCAGTGGAGACACAACCTGCGCAACTCTAAGCGCAGGATGGACACATCCGTGGTTACGGAACCAGAGAGCACAGAGGCCAAGTCCAGAGTGTCCGTCTCTGAGGCTAAGAAACCTAAGCTGCAGCCCAGCCCTCTGGTAGAAACACGCAGTAAAAAAGCTCTGGGTCAGGACAAAGCCACGAGCGCTCTCACTAACGGACACAACATCACAGAGACGGCCGCTTCCCCCACTCAAAAAACGGGTCCTTCTGCCCCCCCTCCTGCTTCCCCTGCAGCCCCTGGCTCCCCTGCTGCCCACCAGAGCCCCGCCAACCCGGAGCCAGCCAGACAGCGGCCCAAACGAGCCTCTGCAGGCAAACTAATGTTTATCAGACAAGCACAGCAGAGGGCTCAGACCAGCGCGGCCTTTAGCCGCTACGCTAACACTACCTCAAACAGCAAGCCCTCCAAACCAGCAGAGCCCCCAACCACACCTCAGCCCCAGACGCGAGTAGAcaaggagaaagaaaaggagcgtgaaaaggagagagaaaaagagagggagcgaAGTAGGGCAGGATTCGCTGCCCTGCCGGACGTTCCCGTCTTCAGGCCTAATGCCCGGGAGTTCCAGGACCCCCTGTTGTACCTAGACTCTATTCGAGAAAGGGTGGAACCCTGCGGGCTCTGCAGGGTCCTGCCTCCCGCAGACTGGAGGCCCGAGTGCAAACTGAACGACGAGATGCGCTTCGTCACTCAGGTGCAGCGCATCCACAAACTGGGGCGCCGCTGGGGCCAGAATGTACAGAAGCTCGCCTGCATCAAGAAGCACCTCAAATCTCAGGGCATCACCATGGAAGACCCTCCAGTCATTGGCGGCTGTGAGGTGGATCTAGCGCGATTCTCGGAGCTGGTGAGTGATATGGGCGGCATGCAGCAGGTGATGGACCTGAAGAAGTGGAACCGGCTGGCCGACCTGCTCCGGATCCCCAGGTCAGCGCAGGACCGACTGGCCAAGCTGCAGGAGGCGTACCTGCAGTACCTGCTCAGCTACGACCAGCTGAGCCCCGACGAGCAGCGGCAGCTGGAGCAGGAGGTTCTCAAGGAGAAGGAGATGCTGGAACGCCGCCGGGGGCCCCTGGAGGGCCACTCTGAGAACTCCCAGCGTACCCTGACACTGCCCCGCTATGAGCCCAAAAACGGCCTGACTGGACTGGCCCTCCGAAACGGCTTCCACACCGTGGAGCCGGAACCCCCGCGGCAGGCCGGCCGCCGCAGACTCTTCTCTCAGGAAAAGAAAGGGGACAAAGTAGATACTCATCACGAAGACAAGATCaaggaggaggaagagcaggATAAAGGGGTTCTCAGTGACCAGCACAAGTGTATATACAAGGGCAGATCAGTGTCTTTGACTATCTTCTACAGAATAGCCAGGAATACCATGATGATGTGCTTTAACAAGGAGCCAGGAGCATCTGATGTTGAGCAAGAGTACTGGCGAATAGTGGATCAGAGGGACTGCCATGTATCAGTGCATTATGGGAAGGTGGACACGAGCACACATGGAAGCGGCTTTCCCGTCGGCAAGTCGGAGCCCTTCTCAAAACATGGCTGGAACCTCACTGTCCTCCCCAATAACTCTGGATCCATTCTGCGCCATCTTGGTGCTGTGCCCGggGTGACTGTTCCCTGGCTGAACATTGGCATGGTCTTTTCTACCTCATGCTGGTCTCGAGACCAAAACCGCCTTCCATATATTGATTACTTACACACTGGTGCTGATTGCATTTGGTATTCTGTTCCTGCTGAGGAGAAGACTAAGCTTGATAATGTGGTGCACACGCTGCTGCAGGCCAACGGCACTCCAGGACTCGAGATGCTGGAGAAGAACATAATGATCTCTCCAGAGGTGCTCAGTCGTGAGGGTATAAAAGTGCATCGCACGGTGCAGCAGAGCGGCCAGTTTGTGGTGGTTTTCCCTGGAACGTTTGTGTCCAAGGTGTGTTGTGGTTACAGTGTGTCTGAGACGGTGCACTTTGCCACCCCGCAGTGGATGAACGTGGGCTACGAGGCTGCTAAGGATCTGAAATGCAGGCGCATAGCCAAGCCCTTCTCCATGGAGAAGCTGCTCTACCAGATCGCCACATCCGAGTCCAAACGAGAGAACGCACTTCTGCTGAGTACAATCTCCTCTCTGCTCAAAGATCTCAGGAACATAGAGATGAGGCAGCGGCAGGAACTCTACGAGGCCGGCCTGCTCTCTTCTGCTCGATACGGCACTCACGACAGCAACCAACCCACAGGAGAGGGCAGGAAGAAACCCCGCAAGTGGCTGGCGCTGGAGTCGTCCGAGAGACGCTGCCAAACATGCCAGCACCTCTGCTACCTGTCTATGGTGGTACAGGAGAATGAGAATGTGGTGTTCTGTCTGGAATGTGCACTACACTATGTGGAGAAACAGAAATCCTGCCGTGGACTGAAGATGATGTACCGCTATGATGAGGAGCAGATTAACAGTCTGGTGAATCTGGTGTGCGGTAAAGCTCTGAAGACCACAGTAGAGAACTGTAACGGCTCCAGCCCCGCCAAACCGCCTGCCAAGCGCGGCCCCCGCAAGAGAGCCACCGTGGAGGTGTCTCTGACCCACCTGTCCAGCCCCGCCCAGCTCTCCAAAAGTGCTGCCACGGCCATCTCATGAGAGACGGCTGTCCTTACTCCTTGCTTTTAACCAATCacatctctctctatatctctctctctgtctctctctatcttgctcACTGTCTCTAGAACCTGTTTCATGTCCCCTGACTCAGTACAGACAGTACGGCAAGAGCTTGCTGTGTGTGAGCAAGAACCTGCCTTTTTTTGCACTAGAGCGtaagaaggttttatttttattttactttttttttgtgattcttTTAGTTAGCATTAAGCTGCGATATACTCGCAGGTATAGATCTGATTAGCAGGTGAGACTGACTTCTACCTTCTTATCCAGATTgtccctcttcctcctcctcctccttctcctcctcctcctcatcttcgGCCCTGTGGACTgcatacacatacaaacacattcaaacacatacactcacacacacactcttactcaaGCCTGAACTGTGAACAGAGGCACACGATGGtgctctattttttattattattattattttgtttttttttctcgtttgtGTTCTCTCTTcattttggggttttattgatataaataaGGGCCGCCAAGCTGGGGCTTGTGCTTGTTTTAGCTTTTGCTTTGATTTCTTTTGTAAAAATGAATACTTTAGACCTCTTCAGTCCCCACGCTCGCGCTTGTGTGGGGAGGAACGGAACGTAAAGGCGAGGTAACACTTGAAAGTGAAAGGACTGCTTGATTAATTCTGAGTTTTCCATCTGATTTTAGATGTGAggagtgttttttatttggttttactTGGTTTTACTTGGTTTTACTCTGCGGATAGGGGAACACTGGTGTTCACAGCAGCGCGTGTGCGTGCGCAAAGTTGTGCTTCAGGTCGCGGCCCCCTGGTGGAGACAGCAGGGTCTTCTGCGCTGAAACGTGGAGATGGTGGTAACTGTGCCTGATCTTCAGCTGGGAGGTCCAACGACTTTTGGTGctttgattttagtttttttttttgttgttttttactgtataaaatcaATACAAAAAGGTAAATGAAAAGAAGTGCTATCTGCCTTCATACACCACAGGACGGAAACGCTCCGGAGGCTTTCCGCTTCTACATGTGCAATCGTGTTAACATTCCATACTTTCAGACCTATTGATTCATCTGTACCAGTtaacattaattattatattattgtaattattattattgttattattattattatttgtgtttggacttttttttttcttttcgatTTCATTTGGATGTGCTGTCTCAAATAGAGCCACTAGGCAGAGggtgtaaaatgtgaaatacgAGTCTTgaggatcttttttttttttttttcttctttctcctcatttttagtttttttctcgcTTTCCCTTTTTGCAGATGAGTCACGAATGATCTAAAGAATCTCAACAAACAccattttcaacattttgtACATACTCctgtaaatgtctttaaatactTGAGCCTTTTCTGAGGGTGACAGAAGGAGGGGACGAAAGCATGATGAAGAAAAGCCTTACCTTTCAGTTTCTTCATCTGTGGGAGTTTAAATGCTTACAGGGTTCCTCTGGTGACGtggaaacatttttaagtgctgcTTATATCACTGAGAAATAAGATATGGAGTAGCGATGCCCCTCCCCGACCCTCCCCCagatttctttctttcgtttttttagctttactttttttaaagaaaagggaaaatacctaaaaaaaaaaaaaaaaaaggtttttacattttcattactGAAAATTCAACAATGTAGTAGCTACTCATGTTGCACTGAGCTTGCCAGTGGTGACTGTCAAGAAAAAAACCTATAATCCAGTTTGTTGGTTGTTGTCCTTTACCGAAGACTGAACTGTTTTAGGAGTATTTAAATGAAAGCCAGGTCAGgtgttttcaaaaaaaaaagtggttgtCAAGTTTTTATGGCCTtacaatgtattttattcagaattttttgctgtttttgttcctttttctACAGTATGAAAGATTTGCTCACCGTCTGGCAAACTTAATTTATTCGCTCTGCGTCTCAGCCTTTCCTTACACATGGGAAGATTTCATGTTGGTTATattgccagtttttttttttttttttttacttttccagtTTGTACTTAAGGTTTAATAAAAACGTATGGACAATTCACGGTCAGTTCTTTTCAa

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0031061 negative regulation of histone methylation biological_process
GO:0048863 stem cell differentiation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0051574 positive regulation of histone H3-K9 methylation biological_process
GO:0035098 ESC/E(Z) complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0032452 histone demethylase activity molecular_function

KEGG:

id description
K11478 JARID2, JMJ; protein Jumonji

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268377 lncRNA upstream 286334 14789870 ~ 14791210 (+) True G197663
TU268373 lncRNA upstream 291804 14785121 ~ 14785740 (+) True G197662
TU268334 lncRNA upstream 304082 14771795 ~ 14773462 (+) True G197639
TU268365 lncRNA upstream 332528 14737355 ~ 14745016 (+) False G197657
TU268368 lncRNA upstream 332528 14737355 ~ 14745016 (+) False G197657
TU268453 lncRNA downstream 39948 15299612 ~ 15355237 (+) True G197716
TU268494 lncRNA downstream 128890 15388554 ~ 15393678 (+) True G197747
TU268641 lncRNA downstream 529714 15789378 ~ 15789854 (+) False LOC103030137
TU268662 lncRNA downstream 561814 15821478 ~ 15842757 (+) True G197848
TU268695 lncRNA downstream 885847 16145511 ~ 16146073 (+) True G197879
XM_022683092.1 mRNA upstream 608677 14466265 ~ 14468867 (+) True tac1
XM_022683091.1 mRNA upstream 712867 14350057 ~ 14364677 (+) True sdhaf3
XM_007236460.3 mRNA upstream 738142 14301910 ~ 14339402 (+) True col28a1
XM_022683094.1 mRNA upstream 784476 14288034 ~ 14293068 (+) True rpa3
XM_022683434.1 mRNA upstream 1088606 13987037 ~ 13988938 (+) True LOC111195557
XM_007228520.3 mRNA downstream 141259 15400923 ~ 15434466 (+) True mylip
XM_007228521.3 mRNA downstream 205828 15465492 ~ 15582858 (+) True LOC103027820
XM_022683102.1 mRNA downstream 332779 15592443 ~ 15611187 (+) True ints3
XM_022683103.1 mRNA downstream 332780 15592444 ~ 15611187 (+) False ints3
XM_007228522.3 mRNA downstream 355509 15615173 ~ 15632584 (+) True LOC103028143
TU268380 other upstream 280816 14794420 ~ 14796728 (+) True G197665
TU268310 other upstream 608662 14466419 ~ 14468882 (+) False tac1
TU267853 other upstream 1714886 13324386 ~ 13362658 (+) True G197334
TU267673 other upstream 2113200 12956860 ~ 12964344 (+) False s100a14
TU267630 other upstream 2149020 12889358 ~ 12928524 (+) True LOC103029421
TU268755 other downstream 1062339 16322003 ~ 16328158 (+) False ppp1r11
XR_002651696.1 other downstream 1085453 16345117 ~ 16359668 (+) True atat1
XR_002651698.1 other downstream 1165269 16424933 ~ 16430534 (+) True LOC111195522
XR_002651697.1 other downstream 1165269 16424933 ~ 16430534 (+) False LOC111195522
XR_002651699.1 other downstream 1165269 16424933 ~ 16430534 (+) False LOC111195522

Expression Profile