RNA id: XM_022683117.1


Basic Information

Item Value
RNA id XM_022683117.1
length 1831
RNA type mRNA
GC content 0.50
exon number 11
gene id atat1
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 16345117 ~ 16359668 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGTTTAGCGGGGCTCGTGTGCGGGATGCAGTGAGAGAGAGTTTGCTGGTGGTGATGTTGGAGGAGGTTGTTCGAGCTGCTGCAAGATTTGAGCTTTCTTCCCACAGCCTTTAGCcactagctctctctctttctcacacagcTATGGATTTTCCCTTCGACCTAAACGCCCTGTTCCCAGAAACCATCTCTGTGCTGGACCAGAATCTGTGCGCTGGCCGGAGACCGTGCGGAAgACCTGATGCCCAGAATCAGATTGCCACCGTCATTGATGAATTAGGGAAGGCTTCATCCAAGGCCCAGCAGTTGCCTGCACCAATTACAAGTGCAGCAAAGCTCCAGTCTAACAGACATTACCTCTACCTGCTGAAGGATGGGGAGCGTAATGGAGGCAGGGGCGTGGCAGTGGGATATCTGAAGGTTGGATACAAGAAGCTATTTCTACTAGACCAGCGGGGGGCGCACGTGGAGACAGAGCCTCTATGTGTGCTGGACTTTTATGTGACTGAGAACCTGCAGAGACATGGATACGGGCTGGAGCTGTTCCGCTTCATGCTGGAGCATAAGAAGGTGGAGCCTGAGCAGATGGCATATGACAGACCCTCTCCCAAATTCCTGGCCTTTTTAGAAAAGCATTTTGAACTCAAACACGGTGTGCCTCAGGTGAATAACTTTGTGGTGTTTGATGGCTTCTTCAGAAATAGATCAGcggCCCCGTTCAGAAAAGCTCCCCCAAAAAAGCCAGAGGGAGAGATCAAACCGTATTCGCTAATGGAGAGAGAAGTTGTGAGAGAGGAGCAGAAGGTCATGCCTTGGCCGTTTGTCCGCTCGGGGATCCCTCCCCCTTCTCCCCCTCTTCCGGTATCCTCCCCGTTCTCCCGCTCCCTCAGTGTGGGATCTTCCCCCAGCCGCGTAGCCCCTCGCCCTGCGCCGGCCCCAGGCGTCCAGCAGGGTTACACCCCACACCACCAGTCGAACGACAACTGCAGGGCAAAACGCACCAGCAATCAGGGTATGGTTGCCAGAAACAACCTCTACAGTCGCCATATCTGCAGCAGAGGCCTTGGGCTATTGCGGGCAGAACAGCTGAACACCTCCAAGCTGCCAGcacacAACTCCACAGTCAGGTTGTATCTCTTCCACCACTACCGGTTTCCAGGCCTGTTTCTAGACAGCCGGCCTCCACGACAGCTCTGGAGCGCAAAGAAGAGGGAGCCTTAAGAAAGCCAAGCTTGGTTCTTGACAATGGCCTGAAGATGCATAGCAGTCCCTGGTTAAGTGGAGTGGAGGATGTGAAGAGAAACAGAGCATTGGAGGTGGAGAAGGGGTCAGGCAGAGGCGGCTGGTCTTGGACAGTCGGTGAGCGACGCTACACGGCCCAGTGGGTCCGACAGAAACAAGAACAACGCAGCACGAGGCCCTGGTGACAGGGTTCATGCAGGCATGAAGAGCGAAGCTGGAAGGAGATCAGAGGAACAAGGGAAACCAAAGGATGTGAACAGACAAACAAAGCAGGGttatttaaatacagaaaaggGAGGATAGTAAAAGCGTCCTTCATGTTCCCACAAGGtgaaaaacataactaaatCACTGAAGATAAAGATTAGAATAAGAAATGTTAGGGAGATAAAAGCCATAAAAAGTTGCATATCTCACATCCGAGGCAGCATTGTTTGACTCAGGTGTAGTAACTGAATtgtagctatttttttaaaagatttgttTTTGATATGTTTATTATAGCCATAAATTAGatctgatgtaaaaaagtattataaAGATTCagggatatttttatttttaaaataaactaaaaagaaaagtgGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268767 lncRNA upstream 1204 16343664 ~ 16343913 (+) True G197925
TU268766 lncRNA upstream 3762 16339690 ~ 16341355 (+) True G197924
TU268728 lncRNA upstream 30865 16240590 ~ 16314252 (+) True G197892
TU268739 lncRNA upstream 116899 16226567 ~ 16228218 (+) True G197903
TU268699 lncRNA upstream 145631 16188912 ~ 16199486 (+) True G197880
TU268908 lncRNA downstream 29229 16388897 ~ 16393498 (+) True c23h5orf49
TU268925 lncRNA downstream 90705 16450373 ~ 16465970 (+) True G198043
TU268928 lncRNA downstream 125361 16485029 ~ 16489049 (+) True G198045
TU268933 lncRNA downstream 165001 16524669 ~ 16525372 (+) True G198050
TU268934 lncRNA downstream 166159 16525827 ~ 16526640 (+) True G198051
XM_007231718.3 mRNA upstream 14877 16321942 ~ 16330240 (+) True ppp1r11
XM_007231723.2 mRNA upstream 90485 16229507 ~ 16254632 (+) True LOC103042292
XM_015602024.2 mRNA upstream 485453 15857116 ~ 15859664 (+) True LOC103032568
XM_007228536.3 mRNA upstream 544884 15792769 ~ 15800233 (+) True csnk2b
XM_007231715.3 mRNA downstream 29140 16388808 ~ 16392659 (+) False c23h5orf49
XM_022683121.1 mRNA downstream 64949 16424617 ~ 16430534 (+) False LOC111195522
XM_022683122.1 mRNA downstream 64949 16424617 ~ 16430534 (+) False LOC111195522
XM_022683125.1 mRNA downstream 64949 16424617 ~ 16430534 (+) False LOC111195522
XM_022683123.1 mRNA downstream 64949 16424617 ~ 16430534 (+) False LOC111195522
TU268755 other upstream 16959 16322003 ~ 16328158 (+) False ppp1r11
TU268380 other upstream 1548389 14794420 ~ 14796728 (+) True G197665
TU268310 other upstream 1876235 14466419 ~ 14468882 (+) False tac1
TU267853 other upstream 2982459 13324386 ~ 13362658 (+) True G197334
TU267673 other upstream 3380773 12956860 ~ 12964344 (+) False s100a14
XR_002651698.1 other downstream 65265 16424933 ~ 16430534 (+) True LOC111195522
XR_002651697.1 other downstream 65265 16424933 ~ 16430534 (+) False LOC111195522
XR_002651699.1 other downstream 65265 16424933 ~ 16430534 (+) False LOC111195522
TU269304 other downstream 2024959 18384627 ~ 18385072 (+) True G198344
TU269373 other downstream 2498864 18858532 ~ 18863222 (+) False G198397

Expression Profile