RNA id: XR_002651699.1


Basic Information

Item Value
RNA id XR_002651699.1
length 3542
RNA type misc_RNA
GC content 0.41
exon number 5
gene id LOC111195522
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 16424617 ~ 16430534 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTAAATGCTTTTCAGTAACTTACATTTTTGTGCTGTTGAGGATgctaaatgttagctagctaaaatcAGCAGATTAAAAAATGATAACCTGCAGTTTTTGTAGCAGATCTCTTGGGACTTTGAAGGGTTATGTGCTGCATTGTAAAGTTCATAGAAACGAACCCCACTGTTTTTTCAAATGTGCTGGTACTGACTGCAAAAGGACATTTTGCACTTATGCAGCTTTTAAGGCTCATTTCTATCGGGTTCACCATGAGCCTGCACCCTCTGGTACTTGTAGAGCTATTGTTACAGACTTTAAATGTGCAATTTCTTTGTGCGAGCACCAGTTTCACACAGTGAAAGAACTTGTATCCCACTTAAAAGAACATATAGTGGAAGGGCGACCTGTGCAATGTCCAGTAACTGGTTGTAAAAAATCTTTCACTGTGAAATCATCCTTTACTGCTCACATGTCCAGGAAACATCAAAAATGTTCAAATGATAGCATAAGTGACCTGTACATGGAATCAGTATCTCAGTCCTCTGCGGACATTGCTCATAGAAGCATCCTCACATGCACAGATCCAGCAACAAATGAAAGCATTGAATTCCCTCAGAATTTCAAAGAAACCTATCTTAGGAATGCATGTTTGTTCTACCTTAAATTGCAAGGGCAGTTTCTTCTTCCAGCTTCAACAATACAGATTATTGTTGAAGAAATGCAAAATGTACATGAGTTGGGACAGGATTACACTTTGAATAAATTACattcacttttaaaaaatgatatgtCCCTTTCAGATGATTCAATTGCCAAAATTTGTGATTGTGTAAAGGAGTCCGATTTGTTCTCTGCCTGTCATCAGGGGCCACTAAGAACAACATATTCAAGAGCTCAGACAtttaaaaagatgtttaaatatgttgagCCTAAAAAAGTGTTATTAGGAAATGATGAAAATATGACTCAAAGGTTTGCTTACTATGTACCTGTGTTACAAACCTTAAGCAGTTTATTAGAATCTGAATTATGGGCAAATTCATTGTCTCAGCAGTCTTGTGAAACAGACACAGATGTGTTTGTTGACATAAATGATGGACAAAACTTTAAGTCCAACAAGTACTTCATTGAAAATCCAGGATGCTTAAAGCTAATTTTGTACCAAGATGCTTTTGAAATTGTCAACCCCCTTGGCTCTgctaagaaaaaacacaaagttGTTGCAGTCTATCTGTCTTTGGCAAATTTACCTGCTCATGTGCGGTCCAATACTAATCACATGTTCCTTGTCTTACTGTGTGGAGAGAATGACTTAAAACAATTTGGAGGTGCCAAGGTTTTCTCAGAGATGTTGGAGGATTTAAAGTGTTTGGAAGACAATGGAATTACTGTAGGTGATGAAACAGTCAAAGGGGCTCTTTATTGTATTGCTGGTGATAATCTGGGTTCACACAGCATTGGTGGGTTTACTGAAAACTTTAGTTGTTCTCAGTACTTTTGCAGATACTGTGAAATCACACGAAGTGAGTTTCAGAGTGATGATCCAAATGTGTGTGGTCCACAGCGCACCCCAGAAAGTTATGATTCCGCTGTTGGTGATCTACAAACTGAAGGTGGAGCCAGTCAAGGCATCAAAGGCATAAAGATATGACTGACTTGGAGCAAACATTTTTACGAACTGCCATAACTGAGGTCTTGCCTGACCTTTCAGAGGTGACAAAAGATATTCTAGAAGAGACCTTACAATCCATTGGGGTGGAAACATTCGATGATTTTCAGTTTATTGAGGAAGCCGATTTGCTGTCAGCGTTAAGGCCAATTCAAGCCCGCAAAGCCCTGGCTGCTTGGAAGCTGAAATgccAGACTCCTGAATCAAGTAGCCCATCTGTTGGTGCCTCACCAGGACCTTCTGCATTCTTTCCATCACCCTCACCCAGAAGTTCATCCTCAGCCTCTTCCAGCAGCTGCCAAAGCCCTGATATAGATTGGGTGGATAGCTTTGTAATACCTTGGGAAAAGTTCCCAGAAGAACTGACGCAGTCTttagagagaggaaaaagaccAAGTCCACGAATGAGACGAGAAATGGTCCGAATTGTGGTGTGCGAGATGATGCGAAAGAGTTCTTGCATAAGTAAAAGGATCTCTACTGAAGTTGCCAAAAAGATGGTGGCAAAATATCCCAAATCTCTGCAAGACGTGATTGAGGGAGATGTGGTTGGGCCAGGGTACCACTCACTAGTCAAGCAATTGCAATACAGGGTAGACAATGTAAAGCGGTCCTCAATCCCAAAAATAAGAAAACGAAAGCATTGCACTGATGAGTCCGATACAGACGAAGTCCCTCCAGAAAAGAAAGCAGCAATCCAGGATACATATGGGTGCATTAACTGGGACGTAAAATTTCTGCCCCTTGGAGAGACCCCAGAGAGCCAAcaagaaaagaatgaaaaacTGAAGAGGATGTCTCAGCAAACCAATGCAAATTCACAGGATGTCAAGCTTTTAATGAGAGCAACTTTCTACACACAGCGCAAACAAGTCAACCAggggaaaaatattaaattcctTCTGGAAGAATGGCCATTTTGGTTTGACGAACTTGGCATGGCTGTCCACTTTAAGGAGCTCACTGGAATTGGCCTAAAAGAAACATTCACACGAAATGTGGATCTGAAGGGGAAACGGCTCCTGAACTActtaaatactgtgtgtgtgaacagaaaaaagaagTTCCTCCAGGCTGTAACAAAGTGtaaagtgatgaggggagagctAAGTGGTTGCTCTGAAGATGTCAAAGAGATTGTGCTGCTTCTGCTGTCCTACTTCGATGAGAAGGAAGATTCGATGTTCTCTTATGTGGATGACACATGCCTGGCAGGAGAAGTACAGTTGGACCAAGTTCAGCTGACTCCCACCATCATTGTGTGTGAGCTGGCATCAACCCTGGAGTTTCTGCAGAGGTGTTTCTTCTCAATCAACCCAGAGAAAGGCACTAAAGTGGAGAAGACCAGCACATCCCGTCTTCCTGTGAACCCTAGAGTGCTTACCTTGATTCAGGAACTTTCAGATCATGAATGGCGTGATGTTTGAATATGGACTAAATATGGATTTATGGTATGTGATGTGCCACACTCaacatttaaagttttgttttagaTCACGTGTGCAGTTCTTTAAGTTTATGGCTCCAGTCCCATCACATTTTTGAATGTAGCAATTTCTCTGCTTTTTGGCCTCCTGTTGACTAGGAGTGTTTTCACATTTGAAAGCCATGGtttgtgtgttatattttgtatatgtttATTCCAGTTAgttttgatttaacactgcagtTTTGTGAGCACACTAAAGAATGTGATCTTTAGGTCATCTTGACTTACATAGGCATCATAAACTCCCATATGTTTCACACCAATTTGTAAAGAGACATGCCTGATAGCAGCTTGTTTTCAGTACAGGAAGTTAGTTTAGTCAGTTAGTTTTAGTTGTAATGTTAAATCATGTGTTCCTGATTTCACATTGCATGTGCATCCGGCAGAAGAATGAGCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268908 lncRNA upstream 31435 16388897 ~ 16393498 (+) True c23h5orf49
TU268767 lncRNA upstream 81020 16343664 ~ 16343913 (+) True G197925
TU268766 lncRNA upstream 83578 16339690 ~ 16341355 (+) True G197924
TU268728 lncRNA upstream 110681 16240590 ~ 16314252 (+) True G197892
TU268739 lncRNA upstream 196715 16226567 ~ 16228218 (+) True G197903
TU268925 lncRNA downstream 19839 16450373 ~ 16465970 (+) True G198043
TU268928 lncRNA downstream 54495 16485029 ~ 16489049 (+) True G198045
TU268933 lncRNA downstream 94135 16524669 ~ 16525372 (+) True G198050
TU268934 lncRNA downstream 95293 16525827 ~ 16526640 (+) True G198051
TU268936 lncRNA downstream 117365 16547899 ~ 16549313 (+) True G198053
XM_007231715.3 mRNA upstream 32274 16388808 ~ 16392659 (+) False c23h5orf49
XM_022683117.1 mRNA upstream 65265 16345117 ~ 16359668 (+) False atat1
XM_007231711.3 mRNA downstream 168753 16599287 ~ 16633452 (+) True nsun2
XM_007231709.3 mRNA downstream 265062 16695596 ~ 16701247 (+) True med10
XM_022683130.1 mRNA downstream 864357 17294891 ~ 17829877 (+) True adgrb2
XM_022683133.1 mRNA downstream 1504159 17934693 ~ 18062867 (+) True col16a1
XM_022683134.1 mRNA downstream 1504159 17934693 ~ 18062867 (+) False col16a1
XR_002651696.1 other upstream 65265 16345117 ~ 16359668 (+) True atat1
TU268755 other upstream 96775 16322003 ~ 16328158 (+) False ppp1r11
TU268380 other upstream 1628205 14794420 ~ 14796728 (+) True G197665
TU268310 other upstream 1956051 14466419 ~ 14468882 (+) False tac1
TU267853 other upstream 3062275 13324386 ~ 13362658 (+) True G197334
TU269304 other downstream 1954093 18384627 ~ 18385072 (+) True G198344
TU269373 other downstream 2427998 18858532 ~ 18863222 (+) False G198397
TU269381 other downstream 2427998 18858532 ~ 18863222 (+) False G198397
TU269386 other downstream 2427998 18858532 ~ 18863222 (+) False G198397
TU269387 other downstream 2427998 18858532 ~ 18863222 (+) False G198397

Expression Profile