RNA id: XM_022683133.1


Basic Information

Item Value
RNA id XM_022683133.1
length 7670
RNA type mRNA
GC content 0.50
exon number 70
gene id col16a1
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 17934693 ~ 18062867 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGAGCAGGAGAAGTGCAGAGCCATAACTTTCCCCTTCCCCCCTGAAGACGAAAGTTTAGGGAAGAGCAGTTTGTGGATTACAGAAGGAGCTGGTTCAGATTGTTGGACGGGGGGGTTTTGCTCTGGATTCATGTGGTCGTGATTGAGAGGAACTATCGATTGTTAGTAGGTAGGAGGTGAAAGGGGGGAGTCATGAGGGTCATCTTGTCCTCCCTTGTGCTGCTGTCCATCTGGTCAGGTCATGGGGGTCGATTGGCATCCGCTGAAGATTCAGGTTCAGGCTCGCCCTGCCCATCTCTGCAGGTTGAAGACTGGAAGTTTCCACAGACGGCCAGACACAACATTACTGGTTTCAATCTGGTGCGGCGGTTCTCCCTGCTGAAGAACAGCGAAGTAAAGAAGATTCGTAACCCGCGAGGGCCTGTCATCCTCCGCCTCGGAAAAGTCCGCCTCATCCAGCCTACTGATGAAGTGTTTCCACACGGATTGCCAGAGGAGTTCACCGTGGTTTTCACCCTGCTGTTGAAAAAGAAGAGTCTGGCAGACAACATCTATCTTTTCCAGATATCTGATGAGCAAGGGTATCCTCAGCTGTCGCTGGATCTAAATGGGCCGGAGGGTACGCTGGCTCTGCGCACGGGGTCCAGGGATGCAGAGGCCCCGTTCGCAGGGTGCGTCTTTAACGGGGAAGGTGTTGAATCACTGCTAGACCTGCGCTGGCATAAAGTGGCCCTGAGCGTGCAGAAAAGAGCAGCCTCCCTGCATGTGGACTGCAGCTCCATCGAGACCAAGCCCCTGGAGCCTTGGGGCCAGATCTCTTCCACTGGACACACGCTGCTGGTCATGAGGGCAAATGATGCTGCACCTGTGGAGATGGACATTCAGCAGATGATGGTGTATTGTGACCCCAGTCTGGCCATCCAGGAGGCTTGCTGTGAAATCCCCGGCGCTCGGTGCCCTCCAGATGCCCCAAAGAGTCGGCGAGCAGCGGAGAATCAGGTGGAGTTTGTGCCCAATCCCTTCAGCCAGGCAATCCTTGGATCAAAAGAATTGGCAGAAAAGTGTGCAAGCTGTGTATTGATCAGTGAGGAACAGAATGTTGTCCAGCAAGGGCAGACCGGTCAGCCTGGCCTTAAAGGAGAGAAAGGAGACCCGGGTCTGGACTGCACTGAGTCTGGGGTTCCTGGTCGAtgctCGGAAGGAGCTAAGGgtgagaaaggagagaaaggacAGTCGGGCCTGTCTGGAAACTGGGGAGGAGCTCTTGGTATTAAgGGAGATAAGGGACAGAAGGGTGAAGTCGGATCTCAGGGTCTAACTGGAAATCCGGGCAAAGACGGTCGGGCCGGTTCTATTTGTGTAGTGGGTCCTAAAGGGCAGAAGGGAACTCCAGGTTCTGTTGGTCCAGAAGGGTTAGCGGGAGAACCAGGCCCACCAGGAAATCCTGGACTACCTGGGATTGGCAAACCTGGATTACCAGGGACTCCAGGTGGACCTCCTGGATCAAAAGGAGACAAAGGGGATGCTGGGATACCTGGAAAGGACGGCGGTCCTGGCGACCCCGGTCCAAGAGGGCCAGGAGGTTCCAAGGGTGAAAAGGGTGATCCCTGTGAAGTGTGTCCAGTGCTGCCAACTGGttcagagaacacagtcacACTTCAAGGGAAACCTGGACCTAAAGGGGAACCTGGAGAGCCAGGGATAGGACTGAGTGGTCTGCCCGGCTCTTCAGGAAAAGATGGCAAGACGGGTGAAAAGGGTGAGCGTGGGTCTGAAGGAACCAAAGGGGAAAAGGGTGAGCCGTGTGCTGTGTGCCCTACGCTTGGTGAAAAACCTACAGCTCCCTTGAGCTCTCAGACTCAGAGTCTGAAGGGGGCTaaaggagagaaaggagagCCGCTGGCTGGGCCGAAAGGAGAGCAGggAGAGCCAGGTCTCAGTGGTCTGCCTGGATTAAAAGGGGAAAAGgGTAATGCAGGCAGTAAAGGCAATGAAGGAAAAACAGGCAAACCTGGTCCAAAAGGAACTGGTGGACAGAAAGGAATAAAGGGGGATCATGGTCTCAAAGGTGAAAAGGGAGACTCGTGTGGTCAGTGCATGACTTCCTCCGAGGGGAAAGGTGGCCCAACCCTTGTTAAAGTACCAGAAGGACCCAGTATACCGGGCCCCCAGGGACCTCCAGGGCCTCCGGGGCCTCCAGGAGAGGCAGTAGAGGGCAAGCAGGGTCCTCCAGGCCTTGAAGGACTAAAAGGAGAAAAAGGTGATCAGGGCTTACAGGGTGACCCAGGATTGGCTGGGGCAGCTGGAACTCCAGGACTGCCTGGAGAGTCAGGTAGAGATGGCCTTAACGGATTGAAAGGAGAGAAGGGCGACGCATGTGACAGCTGTCCGTCGCTCCCCGAGGGGACCGGTGAGGTGATGGGTTTACCTGGACccaagggagagagaggagagccgGGTTTACCTGGCGAGGGAAGAACAGGGAAACATGGAATGCCAGGTATGCCCGGTAGCCAGGGACCTTCAGGACCTAAAGGAAGTCAGGGTGATCCTGGACCTGCAGGAGTTGGCCTCCCAGGACCAcagGGGGAACAAGGACCCAGAGGTCTCTCTGGAGCTGCTGGTCCTGTAGGGCCTCAGGGACCCCCCGGGATGATGGGACCAGCTGGACAGAGGGGCCTGAAGGGTGACGTAGGGCCACCAGGGCCCAAGGGTCCTTTAGGCATGGGTGCAACAGGACCCCCGGGAAGGGATGGCCTTCCTGGTTCACATGGAATCCCTGGGGAGGATGGCAGACCTGGAGCCAGTGGACCTAAGGGTGACAAGGGTGAACCAGGAGATTGCAACTGCCTGCCTAATGCAGCATTCAGAGTACCTGGTGTCAAAGGTTCTGAGAACATGTGGCAGGCTGGCCCTCAGGGCCCTCCAGGACCTCCAGGACCCCCAGGGCCTCCAGGGCCCCAGGGCTTCACAGGCATCCCAGGCCCACAGGGTCTCCCTGGCAATGATGGTCGCCCGGGTCTGCCCGGCCAAGCAGTGGGGTGTGAAGACTGCACCCAAGGCCGGCCAGGCGCGCCTGGCACGGCTGACACTAAGATTGACAAGGAAGATCAGGGCAAGCCTGGTGTCATTCCCATAGATGGCTGTGAGAGGTGTTTCAAGAGGCCGCAGAGCGAGGAAGTACCTAGAGGGCCTGCTAGCAACAACAATGCTTGCACAGGTGTGCCAGGGACGCCTGGTATCCCAGGGCAACCGGGCATCAAAGGAGATCCGGGCGACAGAGGTGAAAGAGGTCCTGCTGGCCTTCCTGGAAGCCCTgGTAATATTGGTTTCCCTGGTCCTCAAGGCCCTAGCGGACTACCTGGTCAGCAAGGTGAGAGAGGACAAAACGGGCTTCCTGGACTGAAAGGAGAACAGggTCCACCTGGAACTCCAGGATACCCAGGAACCATGGGACCACCTGGACTTCCCGGGCTAAAAGGAGAAAGAGGCAGCCCAGGTACTGCGGGACATAAAGGAGAATCAGGCCCACCAGGACCTCCAGGTTTTTCAGGACCACAAGGCCCAGCTGGTCCCAAAGGAGAagcaggagcagcaggagcATTGGGACAGAAGGGAGATCAGGGATTCCCAGGACCACCAGGATTTCCCGGACAGCAGGGACCACCAGGATTTCCAGGAAAAATTGGTCCTACCGGACCAGCAGGGCCAAAGGCAGAGCCGGGCAGCCCTGGAGCACAAGGCCCACAGGGACCCCCAGGCCCTCCTGGATCTGCAGGGCGCCCTGGCATGCAGGGTCCTCCAGGGATTGAAGGTCATGACGGCAAGGATGGGAAACCAGGAATGCGGGGTGATCCAGGTCCAGCTGGGCCTGCTGGACCCAGAGGAATACCAGGATTCAAGGGCATAAAGGGGCATACCGGATTCCCGGGACAAAAGggAGATATTGGACCTCAGGGCCCATCTGGGGCAGCAGGAAGACCAGGGCTTGAGGGTGATCCAGGACCACCAGGAGCACCAGGACATCTGGGTGCTGCAGGTCCCCCAGGTCAACCAGGACCAGCTGGACCTGCTGGCGTGGGCATTAAAGGTGACAAAGgcgaaggaggagagagagggctgCCAGGAATGCCTGGTTCTCCAGGGGCCCCCGGGCATCCAGGACAGATGGGAGAACCAGGCAGTGATGGTGCAGCGGGTAAAGATGGATCACCTGGTCTGCCAGGAGAGGCTGGTCAACATGGACAGAAgGGTGAGGCAGGATCTCCAGGACTGAGGGGGCCACCAGGAGAGCGTGGGCGTCCAGGCCCACCAGGAGGAGGACCCTTCTCCTCTAAAGACTCCGGAGGAATAATGGGCCCAGCAGGGCCACGTGGAGAAAGAGGCAACCCTGGATCTCCTGGACAGTCTGGTTCCCCTGGACCACCAGGAATCCCAGGAAATGATGCTGTTGTCAACTATGATGAAATCAGGTCTTTTATCAGACAGCAGGTCATAAAGATATTTGATGAGCGAATGGCGTACTACATGTCACGCATGCAGATGCCAGTAGAGATGGTATCATCACCTGGTCGACCTGGACCCCCAGGAAAAGATGGCAATCCAGGAATCCAGGGACCCCCAGGGCTGCCGGGCCGTCCTGGGCAGTTCGGACGGGAGGGCAGACAGGGACCTATGGGCCCTCAAGGCCCGCCTGGTGtaaaaggagagaaaggagaTAAGGGTGTGGGAGAGATGGGAGATTCTGGACCCCCAGGAGCTCCAGGTGTTCCTGGACCCCCTGGCTATGGTAAGATGGGACCACCAGGCCCTGCTGGTCAACAGGGTATCCCTGGTATTCCTGGACCTCCAGGGGCAACTGGCCAAAAGGGCAAAGAAGGCCGCTGTCACCCCTCTGACTGTATGAGTGGGCCTGTGGAGTACAGCCCTAAGGGCCCTCCTATTAAAGGCCCCATGTATTAGAGAGAGAACATGAGGGAGTATGAGGGAACAAGAGAGGGGTAAAGGGAAAGGATGAGACTCAAACATCAGCATTCTCATCatcatttttgtgatattgaATCTGCCTGCTAACGCACCTTAGAAGATCTCTGGAGAAGAAACAGTGGAATGAATGGGCATTTGTGTCACCATACAAAAGCAAATGCTACTATGCCGGGGTTCTGGCATACCACCAATGGAGTAATATAAGCTATCTGTTAAAGGAGAACCAGTGCCTAAAGGATATCGATTCCCTGCAATTACAGCCACAAACCCTCTTGGAATACCTGGATTATCACCCATCATGCCTCTCTTTAATTTGGAGTTCTCTACTTTCTGATTTCGTTGGAGTTTCTGTTTTCTAATGCTTGACTGAAGACTTCTGGATTGAGGgccctgattaaaaaaatagaccttCACTATCAACACACTGATTTACTGGCTTCATTGGTGTCATCAGTGAGAAGCTCAGCTATGAACCGTTTTTCTTCCATGTCAACacttcctatttttttttgtgctgaaatgctttcaaaaaaaaaaaatattcctccAGTTTTGGGTCTTCTTGGCAGCTGCTGCATTCTGCTGAATTATTGCTTtgctgaaaaatatttcacacagtCCTTTCTGaaatttttttcttgttcccTATAGTAACCTCAACAAAATATCCCAAAGGAAAGTGCCTTCAATCTTATTTTGAGCCAGACTACACTATAAGTTCCctacattaaaatgtaaaatgtttataatcatAATCGACTTGTAAAGGTGGTAAAATCGAGACATAATGATGCCTATTTACCCTCGAGGTTGTgttgtacatatttatatttatatgtaacggcttttttatacatttatagatTGGCATCAGCATGGCGGTCGTTATTTTTGCCACGGTCATCTCAGATCTATTGTggtattttttaaaagcactAAACGAGacaatattttgtaaaatgttgAAGTTAATGACTTGTTTACTTAAATGAAACAATTTTTACTACAGATTTATAAAGGAAGATAATATTGTGAGCAATTTTTAGTGACACTACAACTCATGGCCTTGTACCATTAACCTTTTAAACCTTTTAGACTTGAACTCCTTTGTTTGATATACTGTACCACTTTCAGGTGAACCACGTGCTTCCACCCAGACACACTTTGCTGTGTTTTCATCTTTAGCTTCTCCATCAGCCACAGTCTCTAGTCCTCATCCCATCGTCTGACAGCAGTCCTGATATCACCACATTCACCCTGCTGCTGTGTGCCAGCCAGATGCCAACCTGATTCGTTTACAGTCAGCACTTTATCCTCTCTCTGTCAGGCGTTCagaactgtttgtgtgtgtgagcgtgtgtgtgtgtgtgagtgtctgtgaGTGAGTGCATGATgtctttttaattgatttttaaaaccaaaagaGCCAAACCACTTTTGTAGCCCCACTTTgagcctttttttaaagaaagcatGAACGTTAAGATTTGGGTCAAACATCTATGAATATGGTCTTTAAAAGTACAATTATATaagcatgtactgtatgtgtgcgtgtatttgtttgtatgatattaaagtgtgtgtatgtgagccATTTAAAGGTGCACTATGTaggattaaaagtaaaaaaaaaacatattgtttaaaatatataaaatcgtTCTGTGTGTGAAGCATGCTTAATGGTAACATTctaataaatgtattgtaaagAGTCTCTTTAGGATGCACAAAAATTGGAATATTTAGAGGATGCTCAATACAAGTGAAATATAACTAaaacaatctttaaaaaaatcactgtgatataaaatataattattagtcTGAAGCCAATAAataactgcatttttttaacaattgcacatatcattgtgcatccctagtCTCTTTATACCATTTTCACTTATGAATTTAAAAATGGGAACAAAATCAGCCATGTAGTGTACAGCCAGAGACTGTTAACCTCAGATTAGTTCTCACTACAGGAAAACTTTCATGTAATTTAGACTTTTCAGACTGCCAGATTGCTTTAGTTGATGCCTGCATAACATGTGCAGCAGTCCCATTGAATTCTCTAAAAAACTGCTCTGTTTAAACATGGGCTCACTCACAACCTGTGACATTTGTAATAAATTTGGGCAAAATGGCAAAATTTGTTAttgatttacattttcttcGCACAATGCTTGCATGTATGAGCATTTGATGGATATCATCACTACTTAAAACCACTGACCAACATAATTAGCCCTGTTAAACTGGATGAAGTGCTGCAAATTTGGAATAAATCTTCTTGTACTAttgtacagtgtgttttttaGTCTGCATTTGCTCAGTATCATAATACACATTGGTACATTACATGCATCATGAAAATGTATGGAGGTATAAAATTTATGCCATACTGCCCACACAGTTTCATCTTAAAAATCCTACATAATGCACCTATAATCTTTACAGTTCTGTTACCAAGGGTTACCCTAATTTACATTAAACAGAAAGACTTGCTGTTCATCACTTCATTTTGCAATGCTTTAACAAACCTCAAGCTTTAAAAGGGTGAAAAAGAAGCCACCGTTACCTATAGCTCCATTTTGTGTTGTTCATGTTGTAGCCACTTGTTGTGCAAATcgttttttaacaaaaaataagaaaagcaataaagttttaaagcagA

Function

GO: NA

KEGG:

id description
K24339 COL16A; collagen type XVI alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269096 lncRNA upstream 670554 17259200 ~ 17264139 (+) True G198172
TU269102 lncRNA upstream 693134 17233876 ~ 17241559 (+) True G198173
TU269080 lncRNA upstream 787466 17146980 ~ 17147227 (+) True G198163
TU268994 lncRNA upstream 1256909 16673080 ~ 16677784 (+) True G198092
TU268937 lncRNA upstream 1368870 16547899 ~ 16565823 (+) False G198053
TU269236 lncRNA downstream 53847 18116714 ~ 18117099 (+) True G198283
TU269260 lncRNA downstream 96529 18159396 ~ 18159608 (+) True G198304
TU269297 lncRNA downstream 257244 18320111 ~ 18320570 (+) True G198337
TU269309 lncRNA downstream 352933 18415800 ~ 18421483 (+) True G198349
TU269311 lncRNA downstream 353235 18416102 ~ 18416635 (+) True G198350
XM_022683130.1 mRNA upstream 104816 17294891 ~ 17829877 (+) True adgrb2
XM_007231709.3 mRNA upstream 1233446 16695596 ~ 16701247 (+) True med10
XM_007231711.3 mRNA upstream 1301241 16599287 ~ 16633452 (+) True nsun2
XM_022683125.1 mRNA upstream 1504159 16424617 ~ 16430534 (+) False LOC111195522
XM_007249378.3 mRNA downstream 40949 18103816 ~ 18127521 (+) True smap2
XM_007249433.1 mRNA downstream 787660 18850527 ~ 18851285 (+) True LOC103029482
XM_007249380.3 mRNA downstream 843719 18906586 ~ 18924321 (+) True pip4p2
XM_007249381.3 mRNA downstream 843723 18906590 ~ 18924321 (+) False pip4p2
XM_007249383.3 mRNA downstream 936507 18999374 ~ 19011467 (+) True tmem64
XR_002651698.1 other upstream 1504159 16424933 ~ 16430534 (+) True LOC111195522
XR_002651697.1 other upstream 1504159 16424933 ~ 16430534 (+) False LOC111195522
XR_002651699.1 other upstream 1504159 16424933 ~ 16430534 (+) False LOC111195522
XR_002651696.1 other upstream 1575025 16345117 ~ 16359668 (+) True atat1
TU268755 other upstream 1606535 16322003 ~ 16328158 (+) False ppp1r11
TU269304 other downstream 321760 18384627 ~ 18385072 (+) True G198344
TU269373 other downstream 795665 18858532 ~ 18863222 (+) False G198397
TU269381 other downstream 795665 18858532 ~ 18863222 (+) False G198397
TU269386 other downstream 795665 18858532 ~ 18863222 (+) False G198397
TU269387 other downstream 795665 18858532 ~ 18863222 (+) False G198397

Expression Profile