RNA id: XM_022683186.1


Basic Information

Item Value
RNA id XM_022683186.1
length 3189
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC103021724
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 22811769 ~ 22828432 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcgcagttATCTGTGTGTGGCCAATGTAGGCAGCTCCTCAGTGTGATGTGTAATGGCTCCTGCGCTGAGTGCTCTCTGGGGGTCAGGGGTTGCGGGGTCAGAGGTTGGAGGGTCAGCAGCACTGGCTAATGGAGAGCTGTTTGTAGTAGGCTCTCTCACAGCACTCTCCGCCCTCCTCGTCCTcaccctgctgctgctcctgctttGTGCCAGCTGCCAAGGgcAGAAGAAAGCTAGCCGGCTCCCTGGGGACCATGAGAACCTGATGAATGGGGTGTCAGAAAAGGAGACATGTAGCCAGTCAGCAGATACAGGCAGCCACGGCACAGACCTGGTGGCCAGTAGCTCCCACAATGGGCCTCTTACAAGTGGTACAGTGCTCACAGACACCATGGACACAAGCCCCCATCCATCAGAGGAGATGCTGTCCAGCCAGTCAGAGCTGCGTTCCTCTATGTCCCAGGACCGTGAGTTACCCAGCATCCCTCCCACCGGTGCCCAGCAGGATGGCCCCGGAGCGTCTGGTGACGGCACGTATGAAGTGGTGAAGAATGCGGCCCCTCGGGACCTCAGCGTGGAGGACTCCCTGTACGAGACTGTCAAAGAGCTGAAGGATGGGGGCCTGCCCAACGGTACACTAAGCCCTGAGGAGCCCCCTGTGCCCCTCGTGAATGGCCGCCTGATCCCCAGGCCCTGCACGCCTGAGCACGGCCCGCTGGCCAACTGTGCAGAGTATGCCTCCATCGACCTCAACAAGAAGAGCCGCTACAGTGCGGACATAGAGGCTCGACGCTCGGCCGCCAACATGACTCAAGCAGAGCCGGAGGAGGACGAGAAACCCCCACCTATACCTGACAAAGCACTGGACGAGAACGAGAACCAGCAGATCAACGGACTCCAGAACGGACAGTTACCCTCCCCATTGTGCAGTCCTCCAGAACCACAGAATGGCATCACTCCATCTGAGGAGTTATCAGCTGTGTACTCCACAGTAGTAAAGCCAGTAGTGGAGGAGAAGGAAAATGATTACAGCTGCATTGGAGAAATTAGAGGACTGATGCCGGAGTCGACTTCCAGCGACCTGTATGCAACCGTGCGGGATGTGTTCCCATCACCTCCTGGTGAGCAGCCCCAGGAGGAGTCCATGGAGAGCCCAGACCCCGGATACGAGACCATCAAGATCCCAAAGACTGTGGAGGAGGGCCAGCAGGGGAACGGGGAGGCGGAACCCGACTATGAGAGCGTTGGAGAGCTGGGCCTGAACAGGGAGATGTCCCGCCTCTGACTGACTCACAGAGTGGGTCTACAAATGCCTACAAACTTatgcagcactgcagcagcagctcatcTGAGTGATATTTTGGAATGGGGTGTTTGCTCATACCAGCTCACTTTGGCACTATCTGCTCTACTAGCATGATGACACACTGCAAATTCTTCTGGCATGGTGCCACATTTGTTGTACCACAGAAAAAATGTGATACACTGAATTGACTTGTTTCCACATGAATGAACTAGATTATTGTATTAATGCCagtttatttgcttttaattgGGTTGATGTAATCTCTTTTATACATGTGGAAACAATCAAGTTAATCCAGTGCATTACTTTGTTCATTGTGTAATTGTGGGCAGTTTGACTTCCAGATGTTTGCTGGCACTAACAGTTACTTTTAAAAGGCACATCCTCTCATTGTAACTTCTGTGGTTATCATTTGTTCGGGATACTTATGAATATGACAtgaaggtgtgtgtatgtgtgttttatttttcagtgcCACGCTCATCTTAAAGAAAAATAGGGTATATGAAGCTTATGTGAATTCTCAGTTGGGTACCGTAACTAGAGTTGGCACCGCAGTGCTCTTGTTatgatgttttattcatgcattGTGTACTAGTAAGCGCGCTCCGCTGGAGGTGGACTTAGCTGGGAGCCGTGTTGTGCCGCTGAGCGAGGTGCAGGTCTAACAGACGGCCGTCGTGCCCTTGGCTCACCCCCGAGAGCAGGCACACACAGCAGGCAATGCCACCACACAAGCAAAACACATCCGCTTTACCCATTCAAAGCTTTGGGAATCGAAGAGATCAGGCAGCATGTAAAAACGCACAGCACATAtcagaaatgaaaaacaaaaaatacatctttCCATGGAGTTCACAATGCAGATCAAATCACCTCTTATGGTACATGTGGTCCTGCTACACTTCTGCATCAGGCTGATAATGATAATCATGGTAAAACATATCTATTACGGATGTTCTAATCTTCTGCAGACTCTTCAGAACTTATTTATGAATATTtgttgaatatatttttaaattctgcTCAAAGTATCTGTTTAATGTGTGTCGTGTGTCCAAATGAATTGTTCATTATTGCCGCAGTATTGACTGAGCGTATCAAATCCATTATTTTGTGACCTTTTTGTTTCCTGTAGTAGGTACACAGTCCTAATGTAGTAAAGCACAAAAGAAACTCCATGGTACTGTCACATAGCGCTTGCCTGGCAACTATTCCTTTGTGTAAACAAATCAAATAGGAAGCGCTTTTTCTCTTGAGAAGCAGTTTAATCCAAAAAAGACGCCGCACACAGACACTGCATGTTATATACATGCCAATAaagactgtaaataaatatattgatcaGTTTAACATATATAGtacaattttatacattttatcacTCTGCCCTCCTTTAATGAaggttttagtgtgttttatacagtagtATGCTTTCTGATGGCTTATAAAGCACAGACGTTTGAGTGGTGTTTTGGGTGCGCTGTGGTTGTCTGAAAGAAATTCTGCAAGTTGTTTGttcatgaagaaaaaaaaagaacgacTCCTACAGTCACTGCCTGGCTGTTTACTCTGTAAGAGGTCTCTGCTTGAAGTGTGGTTTTCAGATATGGGTGACTATAGTTTGAGTCTCTTTGGTGAAAATGTATGGTTGTCTGTGTGTTGATTCTGCGATAATGGTACATTTTCTTGGTACAAGTTCTGTATTGTGAGGgtactttgatttttatttaatatcataCAACATTGATATCTTTTGATTTTACTTCAGAGTGaattcagtgtattttatttgtaaataaatatgattgcaTTTGTTTATATTATCATAGTCTTTTTAAAGTGTCACTTGCCAAATTAAATACAATCTTGCTGGACTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270453 lncRNA upstream 102537 22706486 ~ 22709232 (+) True G199202
TU270447 lncRNA upstream 107113 22703511 ~ 22704656 (+) True G199197
TU270440 lncRNA upstream 127333 22679107 ~ 22684436 (+) True G199192
TU270365 lncRNA upstream 326006 22479853 ~ 22485763 (+) True G199145
TU270362 lncRNA upstream 330153 22477548 ~ 22481616 (+) False G199145
TU270497 lncRNA downstream 39096 22867528 ~ 22869241 (+) False znf704
TU270498 lncRNA downstream 42643 22871075 ~ 22878356 (+) True G199240
TU270499 lncRNA downstream 42643 22871075 ~ 22878356 (+) False G199240
TU270504 lncRNA downstream 52219 22880651 ~ 22885237 (+) True G199243
TU270505 lncRNA downstream 107329 22935761 ~ 22936265 (+) True G199244
XM_022683184.1 mRNA upstream 33928 22714159 ~ 22777841 (+) True LOC111195531
XM_022683185.1 mRNA upstream 33928 22725688 ~ 22777841 (+) False LOC111195531
XM_007249323.3 mRNA upstream 337560 22459246 ~ 22474209 (+) True LOC103024228
XM_022683183.1 mRNA upstream 352891 22448746 ~ 22458878 (+) True fuca1
XM_015605832.2 mRNA upstream 352891 22448747 ~ 22458878 (+) False fuca1
XM_007249311.3 mRNA downstream 1799 22830231 ~ 22869257 (+) True znf704
XM_007249313.3 mRNA downstream 1799 22830231 ~ 22869257 (+) False znf704
XM_007249312.3 mRNA downstream 1800 22830232 ~ 22869257 (+) False znf704
XM_007249310.3 mRNA downstream 90383 22918815 ~ 22934353 (+) True LOC103046770
XM_007249304.3 mRNA downstream 175851 23004283 ~ 23008734 (+) True hey1
TU270302 other upstream 588733 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 1428769 21358464 ~ 21383000 (+) False LOC103037930
TU269957 other upstream 2008879 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 2722782 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 2733474 20053051 ~ 20078295 (+) False fndc5
TU271111 other downstream 2789496 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 2789602 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 2789602 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 3781997 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 4455788 27284220 ~ 27284567 (+) True G200104

Expression Profile