RNA id: XM_022683206.1


Basic Information

Item Value
RNA id XM_022683206.1
length 4940
RNA type mRNA
GC content 0.44
exon number 25
gene id anln
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25567672 ~ 25579392 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAACAGGACCAGTTAACGTTAGTTCAGCAGCAGGAGCGAGGCTTCGCAGCCACGAGTACAGGGCGGGGTAGCGCTGGTTTACATTAAGTTTAGCACTTGAAGATTTAAGAATGGACCCCTTTACGGAGAAACTGTTGGAGCGCACACGGGCTCGCAGGGAAAATCTTCAGAAGAAGATGGCAGAAAGACCTACAGCAGCCAACCGGCAAATGGccaaaagagcaagagagccaCTCGCTGAGACAAATAGTGTCATAAGTGAGCCTCCAGTTGAAAAAGTACTTCCGTCCTCCAAACCTTCTCCTTCAAAGCGCCGCTGCTCGGAGGAGAATATGACTggagaagaaaacaaagaacCAGTTGCCCTTCAAGTTTCAACTTCAGAGATTATAACGGACAAGAAGCCCCCGGTACTACCGAGCAGTATTCGCTCTGCCACAGTCGAGAAAGGGCTTGTCAGTTCAGGGTCAGAGTCAGCCACAGGGCCTGCTTGCCTACCTCCAAGCACTAATAAAATGATGGCCTGTCAATCGCAGACAGTTTGTGCAGATAAAGTGATCAAGCATTCTGTCATGGTGGAAGACAGGGAGACTCCTAAAGATATTCCTGCACAAAACGTTAGCAGCGTGAGGTCTCGCCTGCAGAGACTGGCTGACCAAAGGCATTACTGGGACTCAGAGGGCAGCAATGTCCCTGAGAGTGATGTCCCCTCTCCTCTAAAACCCCAGAGAACAGAGATTCCTACAACTCCAGCTCCAACCCTTGTATCATCAGGACCATCTGTAGGCAGGAAAGGCAGGCTTGCAAATCTTGCTGCAACAATCAACTCCTGGGAAGATGACCTTGGGCCTCAGCCTACTCACAAAGATAATGCAGGGCATTGTGGCACAACCAATGTGCCTCCACCAGCCCTTGCTAAAACCAGTGTTACCAAGACCAGTCCTGCTGAACAGCAGTCTCAGCCTGTCCAGCCAGCTAACAAACCTGTCTACAGCACTCAGCAGGCACCAGTTTATTCACCAGTCAAATCATCCAGAGTAATTCCTCCTAGTCCTCAGAAGACTGAGATGCCAGAACCTAAACTAGCTAAAGGACTTAACTCCCCTGCATCCAGCCCCATGAAGATCTACTCTAGCCATCCTTCCACTCCTGTAAAATCTGCAATCACCTCTTCAAGTCCTCGCAAAACCCCACTGTCCCAAAGCCCGCTGAGGTCTCAGACCCCAGGCAAGGATTTTGGATCTGGTAAAGTGTTTAGTTCAAGTCCCATAAAGCCAAACCTTCCAGCAAAGCCATCCTCTGTTACAGCTCCTGTGTCTCATACCAatgaaaaactggccaaagaaaCAGCTCATTTGCAGCCAAACAACCAAGGTGCAAATGCGGGTGGTGTTAAGTCATTTTTGGAGCGTTTTGGGGAAAGGTGCCAAGAACGTCAAGGTTCTCCCACTGTTGGCCAGATCCGCACACCTGTTGCTCAATCAGTCACTTCATCAGCCAAGTCTAAAATGTTCCAGGAGAGGATTGCTACTACACAGACAGCCTCCACTACTGCAATGCTCACCCAAAAGCAAAAATTGGAACGTGAGGCAGAACTGGCACAGGTTCGCAATCGGTTTCATGCTGGAAACATGTGGAAGAGTAAAGAGGATCTTGCAGAAATCACAAATGACGTGCACTCCAAGGAAGTACTAGATGAAAGTCCTGACCCTGTACTTTGCAGTGAGACTTCAAAACACAGCTTGAGTATTTTGGAAACCCCATCCAAGATCAGTGAACCCGATTCAAAGCCTGTCCAGTTAGGCTCTCTGGAACAGAATGAGGCTTCTGTAGAGAAGCCAGACCTACCTgagcagaaagaaaaagaagAAGCAGAGGAAGAGATACGTGAAATTGAGATGAATGTGGATGGCTCTATTAACTCTGAGGTCATTAATGATCTTTTTGATGGAGTGTTGGAGGACAATGAAGAGGGCGAGGAGGAAGATGCTCTAAACATCTCGTCTATGTCTCTGCTTGCCCCAGTAGTAGAGACTGTGGCTGCTGTTGTGAAGAGCCCTGAAAGGAAACACATGACCTCAACACCGGCAAGCTCATTTATTCACAAGAGTGGGACTCCTGAGAGTGCATCCAGACCCACCAAATTTCAAAGAGCACGACTGCCACAAGCAGGCACTTCTGACGGTACCGAAAATGTAGAAGGGCAGAAACTGCTGTACAGCATTGATGCATACAGATCAACTAGAGTGAAGGATACTGAGAGACCACAAGTTAAACAAGTGATTGTGAGGAAGGAAGATGTGTCTAAAAGAGGGGAAGAGCCTCAAAGCCCCAGCCATATCAGCATTAAACAAAAGATGCAGATTCTGACCAACGAGATGAACCTGCAGCAAACAGTGATTCATCAGGCCAGTCAGGCACTGAACTGCTGCACAGATGAGGAGCATGGAAAAGGCTCTCCGGTGGAGGCTGAGGCTGAAAGACTTCTGCTTATTGCCACTGAGAAAAGAGTGGCTGTGAAAGCTGAGCTGGATCGACTAAAGGCAGAGGGTCCCACAGCTCAGAAGAAATGCTCTTCCAGAACTCAGGAGAACCTGGGTGTGCCTGCCTCTACAGGCTCAATCACACTACAGGAGCTTAGATTACCACTTAAGGCTGACTTTGTCTGTTCTACTGCCAACAAGCCTGAGTCTGGAAACCATTACTTTTTCGTTATGATCCGTGCTggagctgaaaacactgttgCAACTCCTTTAGCTAGTACCCACAGTGCACTCAGTGGGGACGCTTTGACCTTCTCCACCAAGTTTACTCTtcCTGATGTATCCAGTGATTTTGAGATTGACCTTGAAGTCTACTACCTtGTTCAGAAACGAGAGTTTCACCtggataaaagaaaaaagccaaGCAAGTCCAAGGCCATCACTCCTAAGAGATTCCTTGCCATTACTaaAAGCAGTCTTCAAACACCTGTTATGGCAAGTCCTGGTGGTCCGAATGCAGTACGGACCAGCAACTTTGTTCTTGTTGGATCACACAAGTTAACCTTGGCCTCTATTGGAAAAAATAAGTTCCCAATGGAAAAGATCAAATGTCAAGGGAGTGAGAGCAAGCTTCTCAGTGACATGTTTCAGAATAAGGTCCCTTTCCTTTGCCCTCTGGAAGGTCATATCTACCTTAAGATACAGTGTGAAGTTGGCTCTCGTGTGGAGGAAAGAGGCTTCCTGACCATGTTTGAGGATGTCAGTGGATTTGGATCCTGGCACAGGAGATGGTGTGTTCTCTCAGGGTACTGCATCTCCTATTGGACTTATCCTGATGATGAAAAACGAAAGAGTCCAATTGGCCGCATTAATTTGGCCTGCTGCACGAGTCGTAAAGTGGAGCCTGCAAACCGTGAGTTCTGTGCTCGACCCAATACATTTGAGCTGATTACAGTGAGACCACAAAGAGAAAATGACAAGGAAACTCTGGTCAGCCAGTGCAAGAACACAATGTGTGTTACAAAGAACTGGTTGAGTGCTGACACTAAagaagagagaaatctgtggaTGCAGAAACTCAATCAAATCCTGGTGGATCTGCGCATGTGGCAGCCAGACTCCTGCTATAGGCCAGCATGATACCCCATCTAACTAGCTTAGAGGATGAGCATCATCATTGGTCATAATTTCAAATGTCAACTTGTTTGGCTGAGAAGTGCAATACAATTTCAAAGTTACAGAACGTTtacatataattaattttacatttgacCAGTCACGAGCATGGGAGACACTCAATTAAGCCATATTGTACCCATTTCCATATTGCAAAGGACAGAATCCCCTCACCGGTTCTTGCATGTAAATGGTGATCATACTACTTAATGCCGGACCTGGCAAGTAATTCTTAGCTAGTGACAAAAGAGAAATGTTATAGTAATCTGAATAAATTTTAAGGCACTAATGACTGTTTTTACCTTTACTGTACACAAGAGTAAGTAACCCTCACATTTTGGCTTCAAGTTGAGAGTAAAAAGTCAGGTATAATTTATTAACCCTAAAGCTTAATAAACTAACATTCAGTATGTTAGTTACAGAGCTACTGCTGTGTAGCGCTTTAGGCAATATATTCAGTATTCTAATATACAATGTAAGTTGGTCAGTGTTTTTTCCTTTCCAGTAATATTTCTTTAATCTTGGCTGACttcatttttatacagttaaatAGTGTGCATGTTTTTTAGTACTTGGGTGTGACTGGGCTTACTGAAATCTCTCTAATCAGCATCACTTTATCAAAATTTTATGGTGAATTTTAAGgggctttgtttttattttgtttttacacatcacAATTTGTATacacatctttattttaactgatGGTGGTTCTGCAGGCCTCAGTTTCATTGAATTGATTTGTATCTGCAGTTCGCTTGACTAGGATGCAACATCACGCAGAGCTCCACAACTGTATTATATGCTGCTAATACCAATATTAATGAAAGCTTCTTTTTCAGTGGCtttttgtgtataaatagttttttaCAGAATAGCTATGTTTAAAGAAAGCAATCAGGGGTTTATGCttacatgctttttttattgagtctttcataaaatactttttatagaACAGATGTTGACCATTACATTTAAAAGtgggccttttttttttgataaattttAAACACTCCAAATATAGCTGAAACAAACCAGCGCTGAGACTTTAAGAAAAAGCAACAGCTTATCATCTACAGTAAGTGTCTTTTATATTTAGcagttttagtacattaaggTGTACTTAATGGTTTCATTAGCTTACAGTTGAATACCATCaacttttgtccaaagcttGGAAGCAGAATTCTACTGAGAATATCAGTTCTTCACTGATGTACACTTGATCAGTATCAGTAATTGTCTGTCCATTGCAATAAATCTGGATTAAGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271061 lncRNA upstream 19331 25516897 ~ 25548341 (+) True G199691
TU271050 lncRNA upstream 188847 25378579 ~ 25378825 (+) True G199684
TU271049 lncRNA upstream 189526 25377397 ~ 25378146 (+) True G199683
TU271032 lncRNA upstream 258725 25308642 ~ 25308947 (+) True G199669
XR_002651734.1 lncRNA upstream 266816 25297043 ~ 25300856 (+) False LOC103041709
TU271134 lncRNA downstream 344827 25924219 ~ 25925193 (+) True G199739
TU271135 lncRNA downstream 344827 25924219 ~ 25924536 (+) False G199739
TU271136 lncRNA downstream 345522 25924914 ~ 25925193 (+) False G199739
TU271137 lncRNA downstream 345522 25924914 ~ 25925353 (+) False G199739
TU271139 lncRNA downstream 350532 25929924 ~ 25930410 (+) True G199741
XM_022683204.1 mRNA upstream 7548 25529404 ~ 25560124 (+) True LOC103042327
XM_007258808.3 mRNA upstream 7548 25529404 ~ 25560124 (+) False LOC103042327
XM_022683203.1 mRNA upstream 41586 25416568 ~ 25526086 (+) True col8a2
XM_015608253.2 mRNA upstream 41586 25416568 ~ 25526086 (+) False col8a2
XM_015608266.2 mRNA upstream 190470 25370501 ~ 25377202 (+) True trappc3
XM_007258838.3 mRNA downstream 1596 25580988 ~ 25587640 (+) True ak2
XM_007258839.3 mRNA downstream 1596 25580988 ~ 25587640 (+) False ak2
XM_015608261.2 mRNA downstream 10156 25589548 ~ 25614781 (+) False rnf19b
XM_007258836.3 mRNA downstream 13870 25593262 ~ 25614781 (+) True rnf19b
XM_007258832.3 mRNA downstream 38624 25618016 ~ 25620135 (+) False ndufs5
TU270302 other upstream 3344636 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 4184672 21358464 ~ 21383000 (+) False LOC103037930
TU269957 other upstream 4764782 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 5478685 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 5489377 20053051 ~ 20078295 (+) False fndc5
TU271111 other downstream 38536 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 38642 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 38642 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 1031037 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 1704828 27284220 ~ 27284567 (+) True G200104

Expression Profile