RNA id: XM_022683236.1


Basic Information

Item Value
RNA id XM_022683236.1
length 5349
RNA type mRNA
GC content 0.55
exon number 50
gene id col1a2
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27417573 ~ 27443050 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTATTATTCTAGCATCACGGCAGCAGGTTCCTGCTCAGTTTGGAGTAACGTCTGTCACCACAACTGTATGCCTGCTAGAAGTAGCTAAACCAGGCACTGCGGCACAAGGAGTCTGCATGTCGGCCTAGACATGCTCAGCTTTGTGGATACCCGGATTCTGTTGCTGCTTGCAGTGACCACATACCTAGCAACATGCCAATCGGGCCCCAAGGGACCCAAAGGACCTCGAGGTGACAGGGGTCCTAAAGGACCAGATGGAAAACCCGGCAAACCTGGACTCCCTGGGCCTCCTGGCCCCCCTGGCCCCCCTGGTCTTGGTGGAAACTTTGCTGCTCAGTATGACGCTAAAGGCCCCGAGCCTGGCCCTGGACCTATGggTCTGATGGGAGCTCGTGGCCCTGGTGGACCCCCTGGTTCGCCTGGACCCCAAGGACTCCAAGGACATGCTGGCGAGCCCGGAGAGCCTGGACAGGCTGGTGCAGTTGGCCCTCGTGGACCCCCTGGACCTCCTGGCAAGGCCGGTGAAGATGGTAACAATGGCAGACCTGGCAAGCCCGGAGACAGAGGACCTGCTGGAGCTCAGGGTGCTCGTGGATTCCCAGGAACTCCTGGACTTCCTGGCATGAAGGGACACAGAGGATACAATGGTCTCGATGGACGCAAAGGAGAGCCTGGTGCAGCTGGTTCTAAGGGTGAGAACGGTGCTCACGGTGCTAATGGAACCCCTGGACAGAGAGGAGGTCGTGGTCTGCCTGGTGAGAGAGGCCGTGCTGGTCCTGCTGGTCCAGCTGGTGCTCGTGGTGCTGATGGTAACACTGGTCCTGCTGGCCCTGCTGGTCCTCTGGGAGCTGCTGGCCCCCCAGGTTTCCCTGGTGCCCCTGGACCTAAAGGAGAGATTGGAGCCGCTGGTGCCACTGGCCCATCCGGACCTCAGGGACAGAGAGGAGAGCCTGGACCCAATGGTGCTGTTGGCCCTGTTGGTCCTGCTGGTAACCCTGGTGCCAATGGAATCAATGGAGCTAAAGGAGCTGCTGGTCTCCCCGGAGTTGCTGGTGCCCCTGGTTTCCCTGGCCCAAGAGGAGGCCCTGGCCCCCAGGGACCTTCTGGACCTTCTGGCCCCAGAGGCCTTGCTGGTGACCCTGGTCCCATTGGAGTGAAGGGAGATTCTGGTGTCAAGGGAGAGCCTGGTAGCTCTGGTCCTCAGGGTCCCCCTGGACCTGCTGGtgaggagggaaagagaggagcCACTGGTGAGCAGGGAGCTACCGGACCTGCTGGCCTTCGTGGAGGCAGAGGAGCTGCTGGAACTCGTGGTCTTCCTGGTTTGGGTGGCAGAGCTGGCCCAATGGGTATGCCTGGCCCAAGAGGCGCCACTGGTGCTGGTGGACCCCGTGGACCCCCTGGTGATGCTGGCCGTGCTGGTGAGGCTGGTCTGACTGGAGCCAGAGGTCTCCCTGGCAGCCCTGGCAGCGGTGGACCCCCAGGAAAGGAGGGACCTGTTGGTCCTTCTGGTCAAGATGGTCGCACTGGCCCCCCTGGACCTACTGGACCCAGAGGCCAGCCTGGTAACATTGGATTCCCCGGCCCTAAGGGACCTGGAGGCGAGCCTGGCAAACCCGGAGAGAAGGGACCCGCTGGTCCCCCTGGTCTGAGAGGTCCCCCTGGTCCTGATGGCAACAATGGCCCTGCTGGTCCCGTTGGACTTGGTGGTGCCCCTGGTGAGAAGGGAGAGCAGGGTCCCTCTGGTGCTCCTGGTTTCCAGGGACTTCCAGGACCTGCTGGACCTGTTGGTGAGACTGGAAAGCctggagacagaGGCATCCCCGGAGACCAAGGTGTTGCTGGACCCTCTGGTGTGAAGGGAGAGCGTGGTACCCCTGGACCTGCTGGCGCCTCTGGAGCCCAGGGACCTATTGGTGCTCGTGGACCTGCTGGAACTCCTGGCCCTGATGGAAGCAAGGGTGAGCCTGGTGCTgttggagctgctggtgccccTGGACACCAGGGTGCTGCTGGTATGCCTGGTGAGCGTGGTGCTGCTGGTACTCCTGGAGCTAAGGGCGAGAAGGGTGAGGCTGGATACAGAGGACTGGAGGGTAACGCTGGAAGAGATGGTGCCCGTGGTGCTCCTGGACCCAGTGGACCTCCTGGACCTGCTGGTGCCAATGGTGACAAGGGTGAGACTGGCTCTTTCGGTCCTTCTGGTCCCGCTGGTGCTCGTGGTCCATCTGGAGAGCGTGGTGAGTCTGGCCCAGCTGGACCTCCCGGATTTGCTGGACCCCCTGGTGCTGATGGCCAGGCTGGGGCTAGAGGCGAGAAGGGTCCTGGTGGCGTTAAGGGAGATGTTGGAGCTCCTGGCCCTGCCGGTCCTGCTGGAAACACCGGACCTCTTgGTCCCTCTGGCCCTGTTGGCCCCCCTGGTGCTCGTGGTGACAGCGGCCCCCCTGGTTTGACTGGTTTCCCTGGTGCTGCTGGCAGAGTTGGACCTGCTGGTCCTGCTggTATTGTTGGACCACCTGGTCCCACTGGTGCTCAAGGTAAAGATGGTCCTCGTGGTCTTCGTGGTGACGTTGGACCTGCTGGACCTCAGGGAGAGAATGGTCTGATTGGACCTCCTGGTCTGTCTGGTGAGAAGGGATCCCCCGGAGAGTCTGGCCCCATGGGACCACCTGGAATTGCTGGACCTCAGGGTCAGCTTGGATCTCAGGGATTCAATGGTCTTCCAGGATCCAGAGGTGAACGTGGTCTTCCTGGTGCTGCTGGTTCTGTCGGTGAGGCTGGCAGAGTCGGACCTTCTGGTTCTCCTGGCCCCCGTGGTCCCAGTGGTAACATTGGTTTGCCTGGTATGACTGGTCCTCAGGGAGAGGCTGGACGTGAGGGTAGCCCTGGTAATGATGGCCCACCTGGCCGTCCTGGTGCAGCTGGCATTAAGGGAGATCGTGGTGAGCCCGGATCTCCTGGTCCTCTCGGAATTGCTGGTGCCCCTGGACCTCTTGGACCTAGCGGTGCTGTTGGCAGACCTGGAAACCGTGGTGAGGCTGGATCTGCTGGACCTTCTGGAGCAGTTGGCCCCGCTGGAGCAAGAGGTGCACCTGGACCTTCTGGACCCCGTGGTGAGAAGGGTGTTGCTGGAGACAAGGGAGATAGAGGCATGAAGGGACTGCGTGGACACCCTGGTCTGCAGGGAATGCCTGGACCCAATGGTCCTTCTGGTGATACTGGTGCTGCTGGTATTGCTGGTCCTGCTGGTCCCAGAGGCCCAGCTGGTCCCAATGGCCCACCAGGCAAGGATGGCAGATCTGGCACTCATGGTCCTATTGGCCCCGCTGGACACCGTGGACCTCCTGGACATGTTGGACCAGTtGGACCTCCCGGATCTCCTGGTCTGGCCGGACCCCCTGGTGCTGCTGGAGGCGGATATGACGTTTCTGGTGGATACGATGAGTACAGAGCCGATCAGGCTGCTCTCAGGGCTAAGGACTACGAGGTTGATGCCACCATCAAGTCTCTGAACACTCAGATTGACAACCTGCTCTCACCTGAGGGCTCCAAGAAGAACCCTGCCCGCACCTGCCGTGACATCAGGCTCAGCCACCCAGACTGGACCAGCGGATTCTACTGGATCGACCCCAACCAGGGCTGCACCATGGATGCCATCAAGGCTTTCTGCGACTTCAGCACCGGCCAGACCTGCATCCACGCTCACCCCGAGAGCATTCCACGCAAGAACTGGTACAGAAGCTCCCAGGAGAAGAAGCACATCTGGTTTGGAGAGACCATCAATGGTGGAACTGAGTTCGGCTACAATGATGAGACCCTGAGCCCACAGTCCATGGCTACTCAGCTGGCCTTCATGCGTCTCCTGGCTAACCAGGCTGTCCAGAACGTCACCTACCACTGCAAGAACAGCATCGCCTACATGGACGCTGAGAACGGCAACCTGAAGAAGGCAGTTCTGCTGCAGGGCTCCAACGATGTGGAGCTCAGGGCAGAGGGCAACAGCCGCTTCACCTTCAGCGTTCTGGAGGATGGCTGCACTAGACACACTGGCCAGTGGAGCAAGACAGTCATTGAATACAGAACAAATAAACCATCTCGCCTGCCCATCCTCGACATTGCACCTTTGGACATTGGTGGCGCTGATCAAGAGTTTGGTTTGGACATTGGCCCAGTCTGTTTCAAATAAATAGACTCATGATAAATTAaaacgagagaaagaaagaaagaaaatagaaaaaaatctcTGCCCTTCTtctctgtgttgtttttttatactgaatGCTGATTTCCTCTGCACATCCACTTGCTTAAGCTGGGCAATATCGGAGAGGACCAATGGACTGAACGGAGCATTGCACAATGCAAATTAATACAGCTGCCCAAAGAGACGCTGGGAAACACCATGGTTTGGGACATGCcatcattttgtaaaaaacCAAAGAAgtgtaataaaaacaatgaaagtacGCATCATTTTGTGGTCTTTGTATATCTTCCATAGAGGAGGTTTAAAACCACAATTTCCAAAAGGTTTAAACTACCTCATGCCtgtataaagaaaataatattaccAAACCTGACCCACATCCTAGATGTTACTCGCTGGTACTAAGGCTTCAAGTCCTGTCCTGTGACAAAGGTGCTCATACACTTGAAGCGGGGATATATGGTGCTACACATACAGCTGTGGAGGAAACCACTCTTACTGTATTACTTTGTATTGTCTTTACGGAGTGTTGCACAGGTCCGCCTGATATAACCCCATTTTTTAAGCAGGTGGAAAATTCCTAAACCTGATGTTTGCccagtttttacttttttttggtttgtttgttttgttattttttattttgttttgttttgagttTGTCTGGATTTCCCTTTTTGTTTTCCGGCATTTAGTTCCACCAACTTCCCCCCACAGTGTTCATACTGACAGCACATTTCGTCCATTTGAATGGGTTTTGGAGGAGTCTCTCTCTCAAAATGAACATCAAAGTTTATTGTACCTATTTTGTATATGTGAgatgtttaaataaattgtgaAAAGTTCTGAAATAAAGCATGTCCATTGTTCCAAAACACAACATTTCACGAGTTAAGTGCTTTAATGTGTAtagaacagattttttttaaaacagacaaattttAGCTATGGAATATGAAAGTTATAGGAAAACAGATTATTTGAATGTCTTTTGATTATTAAAACTTGAACTTAATGGCAAGTTTCACTTCAGGAACGTTTACTTGTCATGATTTGCTATCATTTCAGTTCTGAGGAACTTTACTCCACTGTATGTTCAGACTAATTCTCAcaattgtatttaataaaaggCAGCATTTTCA

Function

GO:

id name namespace
GO:0009612 response to mechanical stimulus biological_process
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271683 lncRNA upstream 60632 27356720 ~ 27356941 (+) True G200125
TU271680 lncRNA upstream 82351 27332014 ~ 27335222 (+) True G200124
TU271664 lncRNA upstream 111987 27304558 ~ 27305586 (+) False LOC103023645
TU271657 lncRNA upstream 123233 27293679 ~ 27294340 (+) True G200110
TU271649 lncRNA upstream 137656 27279613 ~ 27279917 (+) True G200102
TU271708 lncRNA downstream 1844 27444894 ~ 27445449 (+) True G200143
TU271719 lncRNA downstream 24310 27467360 ~ 27468802 (+) True G200148
TU271737 lncRNA downstream 68938 27511988 ~ 27515678 (+) True G200158
TU271738 lncRNA downstream 68938 27511988 ~ 27515678 (+) False G200158
TU271747 lncRNA downstream 163423 27606473 ~ 27609051 (+) True G200166
XM_007259806.2 mRNA upstream 85984 27307466 ~ 27331589 (+) True LOC103023978
XM_007259805.3 mRNA upstream 112020 27304521 ~ 27305553 (+) True LOC103023645
XM_007259800.3 mRNA upstream 285601 26921747 ~ 27131972 (+) True vps50
XM_007259801.3 mRNA upstream 285606 26921747 ~ 27131967 (+) False vps50
XM_007259798.3 mRNA upstream 501390 26899668 ~ 26916183 (+) True hepacam2
XM_007259808.3 mRNA downstream 7959 27451009 ~ 27466504 (+) True casd1
XM_022683237.1 mRNA downstream 35686 27478736 ~ 27588721 (+) True ppp1r9a
XM_007259814.3 mRNA downstream 52225 27495275 ~ 27588721 (+) False ppp1r9a
XM_007259815.3 mRNA downstream 52225 27495275 ~ 27588721 (+) False ppp1r9a
XM_007259816.3 mRNA downstream 52225 27495275 ~ 27588721 (+) False ppp1r9a
TU271651 other upstream 133006 27284220 ~ 27284567 (+) True G200104
TU271396 other upstream 804391 26610429 ~ 26613182 (+) False c23h18orf21
TU271111 other upstream 1797444 25617928 ~ 25620129 (+) True ndufs5
trnai-uau_8 other downstream 46993 27490043 ~ 27490136 (+) True trnai-uau_8
trnai-uau_9 other downstream 47887 27490937 ~ 27491030 (+) True trnai-uau_9
TU271825 other downstream 372286 27815336 ~ 27818650 (+) True G200235
TU271914 other downstream 538463 27981513 ~ 27983350 (+) False LOC103032101
TU271959 other downstream 750524 28193574 ~ 28196198 (+) True G200341

Expression Profile