RNA id: XM_022683273.1


Basic Information

Item Value
RNA id XM_022683273.1
length 5507
RNA type mRNA
GC content 0.53
exon number 41
gene id clasp2
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 28808329 ~ 28874267 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGTCAGTAGCAGTGTTTGTCCAGTAGCGCAGGCTGGCGGGGCTCTGACCGAGCAGGGCGGCTGTAGGTACCGGTAGCGCTGCTGTGGAGACCCGGGGAGGAGTGAGAGCGATATAGTGTGAGCGGCAGCGGCGGCTGCATTGTGTTGGTGTGACTGTTCGGGAGTTGAGTGAGTGTGAGGACCGGTGGCTGCACTGCAGGGGGAGCACCGCCAACAGAAGAGCCCGAAGAGAGGCACCGAGGGTCGGCGAGAGGAGCCGAAGTGAGGCGGGCTGGGCTTGGTCAGATGGAGGCTCGGAAGGAGCCAGGCGGCACGGCCCAGGCTGACCGGCCACAAGATTAGCTAgctacagctagctagctaagctagttagctaacgaCACATCTGCCGCTTTCATGAGCATCGCTTTAGTTAGCTAGCATAGCTAACTTagcgctagttagctaaccaagctaactgTTATTCCCCCAGCCAGGGCGCTCGCTTTCCCGCTTAGCTCTGCTGTTGTGACCGCAGCgcctagctaacctaactagccctgtttttgtttgtttgagctAGTTAAATAGGTTATAACTGGGCTAGCTACTTTTGTTTATTCAGTCATATTCAGTTTCTCAAATTGTATTGGcttgttatttcttttttgtaaaatgaCTTGTAGGAGTTTTCATTTGTATAATTTGGACTAGAACaaaagttaatatatatatattaatttggaGCTTCAGCTAAATAACTAGTTAGCGACTTTTACTCCAGAGCTTTTGTCACATTTCCTCCGCTGCCCTGCTGTTTCTGTTACTAGCAGGAGCCACACGAACAGCCTTGCCCCCCTCTGAGCGCTTTGCTACAAAACTAGCTACAAAGCCATGGAGGAAAATGACAACATGGACTATTTTTACCAGCAAGTTTTGCAGAAGGACGTGAGCCGGCGGCTGCAGGTCGGCCCGGACCTAATTGACTACCTCAGTGACCCGCAGAGGTCCGCGGACGTGGATCAGGACAAATCCCGGCTGGATAAAACCATAGATGAGCTGACCGGGTGGGTCAATTCGAGCAATTTTAAGgTTGCTTTGCTGGGGATCGATATCGTCAGTGCGTTTGTCGATCGGATGAGCGAACGCTTCAGAGGATATGTGGGCACAGTGGTTCCTGCGTTAGTGGATCGTCTGGGTGATGGGAAGGATCAGGTTCGAGATCAGGCGCAGGCGCTCATTCTCAAACTGATGGAACAGGCAGCCACTCCCATGtACGTTTGGGAGAGGTTGTTCTCTGGCTTTAAACACAAGAACTTCCGCAGCAGAGAGGGCCTGTGTTTGTGCCTGGTCGCCACACTCAACGCGTATGGTGCCCAACCACTGAGTCTGAGTAAATTTGTGCCTCATTTGTGCACACTAACAGGAGACCAGAACCCCCAGGTGCGGGAGTCTGCCATATCAGCCCTGGTGGAGGTGTATCGACATGTAGGAGAGCGAGTGAGAGCAGATCTAAGCAAGAGAGGACTACCAGCTGCACGGTTGCAGACTATTTTGAGCCGGTTTGATGAAGTGTTGAATTCTGGGAACATGGCTCTCAGCCTCAGTCAAGaTCGCAGCTTCGATGACGATGACTCGGTGGACGGAAGCCGGCCCTCCTCGGCTCAGGCAACTTTCAGAGTGCCGAAAGTGCCGAAGAAACCTGCGGAGTCGGCCAGCAGCTCCAGGAGACCCAGCGCTACAGGAGCTGCCAAAACGGGTGGGTCCAAAGagggagctggagctgtggatGAAGAGGACTTCATTAAAGCATTCACAGATGTTCCCACTGTTCAGatTTACTCCACGCGGGATCTGGAGGATAATCTGAACAAGATCCGAGAGATTTGCTCTGATGATAAACATGACTGGGATCAGAGAGCTATTGCTATGAAGAAGATCCGCTCTCTTCTGGTCGCCGGGGCGAACAACTACGACTGCTTCTTTCAGCACCTGCGGCTGCTGGATGGAGCGTTTAAGCTGTCAGCTAAAGACCTGCGCTCGCAGGTGGTGCGAGAGGCCTGCATCACTGTGGCaCACCTCTCCACAGTGTTGGGGAATAAGTTTGATCATGGAGCAGAGGCCATTGTACCTGTGCTGTTcaacctcatccccaactgTGCCAAAGTGATGGCCTCTTCCGGCACGGCAGCTATTCGCATCATTATACGGCACACACACGTGCCGCGGCTGATTCCTCTTATCACGGGGAACTGCACGTCAAAGTCTGTGTCTGTGAGAAGaCGCTGTTATGAATTCCTGGACCTGCTGCTGCAGGAGTGGCAGACACACTCTCTAGAGAGGCATGCTGCAGTTTTGGTGGATAGCATAAAGAAGGGTATCAGAGACGCAGACTCAGAGGCTCGAGTGGAGGCCAGAAAGACATACTGGGGGCTGCGGGCACACTTTCCCGTCGAGGCGGAGTCTCTATATAACTCATTAGAATCATCATATCAGAGGACGCTCCAGTCGTGTCTAAAGAGCTCGGGCAGCGTCGCCTCACTGCCACAGTCTGACCGCTCTTCTTCCAGCTCTCAGGAGAGCCTTAATCGTCCATTGTCTTCAAAGTGGTCAGCTGCTCCAGGCAGAGTTCCAGCCAGCTCCAAGTCATCAGGATCCCCAGGCTCTCTACAGCGCTCTCGGAGTGATGTGGACGTGAATGCAGCTGCTGGCGCTAAGGCAAGACACAGCGGGCAGACAGGAGGGGCCGGACGCCTCACTACAGCACTGCCCCCGGGCTCATGCGCCTCACTAGATGATTCTTCTGATAAGGATGGACGACTACGCACCAAGCAGCCGCTGTCAACACCATCAGGAGTGGGAAGCAGTCAGGTGGACTCCAGAGGGCGGAGCCGAACAAAGATGGTTTCACAGTCCCAGCGTTCCGACGATTCAGATTGCACGCCAGGATCTCAGTCTGCTACCCCTGTTGGTGcggGATCTCGTTCTGGATCTCCAGGCCGCGTGCTGGCGACCACAGCTTTGAGCACACTCAGCACAGGTGCACAGCGTGTGAGTGCAGCTCCAGGCTCCCATCGTCGCAGCAGGATCCCCCGCAGTCAGGGCTGCAGCCGGGACTCCAGCCCCACACGCCTGTCTGTGGggtCGAGTCTGGGGATGTCTCAGTCCAGTCGTCTTTCTTCCTCTGTCAGTGCCATGAGAGTATTAAACACGGGGTCGGACGTAGAGGAGGCCCTTGCTGATGCACTGCTTTTAGGAGATATGCGGAGCAAGAAGAAGCCAGCCCGGCGGCGGTACGAGAACTACAGCATGTGCTCTGACGATGATGCGAACAGTGATGCATCGAGTGCGTGCTCGGAGCGCTCATACAGCTCCCGCAACGGAAGCATTCCCACGTACATGCGTCAGACTGAGGATGTGGCCGAAGTGCTCAACCGCTGTGCCTCCGCCAACTGGTCTGAGAGGAAAGAGGGGCTGATGGGGCTGCAGACTTTGCTGAAGAACCAGCGCACTCTCAGtcGGGTCGAGCTCAAGCGATTGTGTGAAATTTTCACCAGGATGTTTGCAGATCCACACAGCAAGCGTGAGTCCAGAGGCTTCGGCACGGCAGAATCCGGTATCAGTTCCGCCTCCTTCAAGAGAGTGTTCAGCATGTTCCTGGAGACTCTGGTGGACTTTATAATGGTACATAAAGAGGATCTGCAGGACTGGCTGTTTGTACTGCTCACACAGCTGCTGAAGAAGATGGGTGCAGACCTGCTCGGCTCAGTACAAGCCAAAGTACAGAAAGCTCTTGATGTCACAAGGGAATCTTTTCCTAACGATCTGCAGTTCACCATTCTCATGAGGTTCACCGTAGACCAAACACAGACACCAAACTTGAAGGTGAAAGTTGCCATCCTGAAGTACATTGAGACCCTGACGCTACAGATGGAGCCACAGGACTTTGTGAACTCCAGTGAAACCAGACTGGCAGTCTCCCGCATCATCACATGGACTACAGAACCCAAGAGCTCTGATGTTAGGAAGGCAGCCCAGTCTGTACTGATTGCACTGTTCCAGCTGAACACACCAGAGTTCACCATGCTTCTTGGCGCACTACCTAAAACCTTCCAAGATGGAGCCACCAAACTCCTACAGAATCACCTGCGCAACACAGGCAATGTAGCACAGGCCACCGTGGGAAGCCCTCTAACACGACACACACAAAGATCACCAGCCAGTTGGTCCAGCCCACTAACCTCCCCGACCAGCACGTCACAGAACGCACCCTCACCTAATGCTTTTGATTATGACACAGAGAATATGAACTCTGAGGAGATCTACAGTTCTCTTCGGGGGGTTAGCCAAGCCATCCAGAACTTCAGTGTCCGTAGCCAAGAGGACATGACTGAACCACCGCGCAAAAGAGAGGGCGATGGAGGAGAAGAGggCGGTACTGATGCTACAGATTCTGGCCGGACGGCTCTGGATAACAAAACCTCTCTCCTGAATACTATGCCCCTCCTCTCCTCCAGTCCCCGCCCCACAAGAGAGTACCAACCAGGCGGTTACTCTGACTCTTCCTTTGGGTCCTCCCCTTTCAGTAAAAGCATGAAAGATGCACTGGACCAAGATGCAGAGTCCCTTACAGACGACAGTGGTGTGGACCAGTCGGAGGTGGTGGCTGAGCTGCTTAAGGAGCTCTCCAATCACAGTGAGCGGGTAGAGGAGCGGAAAGCAGCACTGTGTGAGCTCATGCGGCTCATCAGGGAAACACAGCTACATGTCTGGGATGAACACTTCAAAACCATCCTTCTGCTGCTACTGGAAACTCTGGGAGATGGAgagCATGTGATCCGTGCTTTGGCACTGCGAGTGCTGAAAGAGATTCTGAACAGGCAGCCATGGCGCTTTAAAAACTATGCAGAACTCACCATCATGAAGACCTTGGAAGCACATAAAGATCCACACAAGGAGgtggtcCGGGCAGCAGAGGAGGCAGCTGCTATGCTGGCGAGCTCCATAAGCCCAGAGCAGTGCATTAAGGTGCTGTGCCCCATCATCCAGTCTGCAGACTACCCCATCAACCTGGCTGCAATCAAGATGCTGACCAAAGTCATTGAACGCCTGTCCAAGGACGGCCTGCTCCAGATGCTCCCTGAGATTGTCCCTGGGCTCATACAGggttatgataactcTGAGAGCAGTGTACGAAAAGCCTGTGTGTTCTGCCTGGTGGCTATCTATGCCATTATTGGAGAGGATCTCAAACCTCACCTCAGCCAACTGTCAGGCAGCAAGCTGAAGCTGTTGAACCTGTATATAAAGCGTGCTCAGAGCGGCTCCAGTGGAAGTGACCCCTCAGACATGGGAGGTCAAGGCCTGTAGCTTCGCCCACAGGACTCACTCACAGGACTTTATGAGGGCAGGCTTTTTAACATGCATATAGAACACTCCGACTGCTATACACTCACACAGGCTTGCAGTCGCGCACACTCTCACATGTATGGACCTACACTGCTGGACTCCATCCCTTGCCTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272200 lncRNA upstream 26296 28770134 ~ 28782034 (+) True G200511
TU272159 lncRNA upstream 63006 28703778 ~ 28745324 (+) False G200482
TU272169 lncRNA upstream 70004 28736851 ~ 28738326 (+) True G200490
TU272165 lncRNA upstream 79374 28726065 ~ 28728956 (+) True G200488
TU272156 lncRNA upstream 97497 28703778 ~ 28710833 (+) False G200482
TU272429 lncRNA downstream 144306 29018573 ~ 29019097 (+) True G200628
TU272650 lncRNA downstream 587894 29462161 ~ 29467157 (+) True G200780
TU272652 lncRNA downstream 587894 29462161 ~ 29467527 (+) False G200780
TU272661 lncRNA downstream 610673 29484940 ~ 29485686 (+) True G200785
TU272676 lncRNA downstream 653796 29528063 ~ 29568073 (+) False lypla2
XM_022683251.1 mRNA upstream 5612 28784642 ~ 28802718 (+) True fbxl2
XM_007245661.3 mRNA upstream 52871 28747087 ~ 28755459 (+) True crtap
XM_007245656.3 mRNA upstream 108550 28681071 ~ 28699780 (+) True LOC103028750
XM_007245654.3 mRNA upstream 135883 28657320 ~ 28672447 (+) True LOC103028128
XM_007245651.3 mRNA upstream 216143 28584404 ~ 28592187 (+) True anp32e
XM_022683282.1 mRNA downstream 3303 28877570 ~ 28904102 (+) True ubp1
XM_007245663.3 mRNA downstream 32255 28906522 ~ 28921254 (+) True pdcd6ip
XM_007245664.3 mRNA downstream 32341 28906608 ~ 28921254 (+) False pdcd6ip
XM_022683285.1 mRNA downstream 58049 28932316 ~ 28952514 (+) False arpp21
XM_022683284.1 mRNA downstream 58057 28932324 ~ 28952514 (+) False arpp21
TU271959 other upstream 612132 28193574 ~ 28196198 (+) True G200341
TU271914 other upstream 824980 27981513 ~ 27983350 (+) False LOC103032101
TU271825 other upstream 989680 27815336 ~ 27818650 (+) True G200235
trnai-uau_9 other upstream 1317300 27490937 ~ 27491030 (+) True trnai-uau_9
trnai-uau_8 other upstream 1318194 27490043 ~ 27490136 (+) True trnai-uau_8
TU272690 other downstream 676869 29551136 ~ 29552883 (+) False eloa
TU273012 other downstream 2135659 31009926 ~ 31012165 (+) False rbm24
TU273004 other downstream 2138444 31012711 ~ 31015045 (+) True G201018
trnaq-uug_6 other downstream 2556280 31430547 ~ 31430618 (+) True trnaq-uug_6
trnar-acg_20 other downstream 2556684 31430951 ~ 31431023 (+) True trnar-acg_20

Expression Profile