RNA id: XM_022683282.1


Basic Information

Item Value
RNA id XM_022683282.1
length 4485
RNA type mRNA
GC content 0.48
exon number 16
gene id ubp1
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 28877570 ~ 28904102 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTCGTTGGTATGAAGTAATTCTAAACTGATGCTGGAACTGCGTTTGGTGACTGGGAAGACGATGACGACAGCGACGTCTGACGATTCTTATTGGTCGAGCCACGATCCGTTGCCATGCAGGACGCGGTGTGGTTGGTTACCGACTCCGGGAGATCGGGTCTGCTGTAGTTCGGTCAGTTGGTCCGCGGCGGGGTGTTCGGCGAGGGGAAGCCATGATGTCtccttgttgttgttgttgttgttgtgcgCTGTGTGGATCCTTCAGACATGAAGCCTGAGGTCTCCGCCGGTCTGGGGTTTATCAGCATGAAACTGGGGGAGCGGTTCCGGACGGGAGCGGACAGAAGAAGGGCTGTTAGTGAGATCTGAGAGTCGGAGCCGTCGGTCGGGCGGACATTGCGTGTGTGGCTGAGTGTGCACAGATGCACTGACTGGATTGTCAGCAGCGTCCTCCCACTGtgtttagcttgttagctagttTGTACAGCTAACGTTAGCTGTACATAAAGCTAGTTACCTGACCTGCTACAGatgtagctaattagctagctggctgttttgttagttaactagctaagaagggaagctagttagctagctagctaccctaTGGCTGATCGcgtagcaagctaagttagccagctagcttagATCTTAACTAAAAAACTAGTTAGCAACTTAAGCTAAAGAGGAGCCTGTTTGTTTATTCGTCGTGAAAAATTGTGCGCTGGTCGTGTCATCCTTGTTTGAAACTGACTAgctgttagttagctagatagcctaactagctaactaactgaGCATCTCTCCAGacagctaagctaaactaagctagctagctgcaTGGAGAAGCTCACAGCAGCCACAGCCACACAGTCACCCATTCCCCCAATGACTCTCAGCGGCTAGTTTAGCTAAGCTACCGCCAGTGGCCAACCAGCTGACGAATTCGCCCCGCCTGCCTGCTCGCCTGTCCGCCTGCCTGTGCGCAGTTAGCTCCCTGTTTAGTGGACAGAGAGTGGGAGAAACTGGCGGCCCTCCGTCTGGAGCCCGATGAGAAGGATATAGGCGCCATGGCGTGGGTGCTGAAGATGGACGATGCTACGATCGAGTCTGGACTCGTCCACGACTTCGATGCCAGCTTGTCTGGTATCGGCCAGGAGCTCGGGGCTGGAGCCTACAGCATGAGTGATGTCTTGGCTCTTCCCATCTTCAAGCAGGAGGATGGAAGCGTTTCTGACGAGTCTGACAGTAAAAATCCTCCGTTTCAGTACGTGCTGTGTGCTGCCACCTCACCAGCCGTTAAACTGCACGAGGAGACACTCACCTACCTAAACCAAGGCCAGTCTTATGAGATTCGTCTCCTGGATAACAGGAAGATAGGGGAAATGCCGGAACTCAACAGCACCAATGTGAAGAGTATAGTGCGAGTAGTATTTCACGACCGAAGACTGCAGTATATGgagcatcagcagctggagggCTGGAAGTGGAATCGGCCTGGTGACCGTCTTCTTGACATTGATATCCCCATGTCTGTGGGTATTACTGAACCCCACACCCACTCCTCCCAGCTAAACGCTGCTGAGTTCCTGTGGGACGTCTCCAAGCGTGCGTCCGTGTTTGTTCAGGTGCACTGCATCAGCACAGAGTTCACCCCCCGAAAACATGGCGGCGAGAAGGGTGTTCCGTTCCGCATCCAGATAGACACCTTCAAACAGAACGAGAACGGAGAGTACACAGAACACCTGCACTCTGCCAGCTGCCAGATCAAAGTGTTCAAGCCAAAAGGAGCCGACCGGAAACAGAAGACTGACAGAGAAAAGATGGAGAAAAGGAGTGCACAAGAGAAGGAGAAATACCAGCCCTCATATGATACTACTATTCTATCAGAGaCTCGTCTGGAGCCGGTGATAGAGGAGGCTGTGGAGCAAGAGCTGAAGAAATCCAGTAAGCGCACACTGCCTGCAGATTGTGGAGATTCCACAGCCAAGAGCAAAAGAGGcagttgttCTCCTTGGCCTGATAATGCGTATGTGAACCCAAACACAGCAGCTCCTGCAACCTTTACCTCcaacacacactcgtacacaagTGGCAATGCTGTGCCTGAAAGTGAATCTTCTTCACCCAACCACCAAGGAGAAGCTGTCTGTCACATCACTATGGAGTCTTTAAGCCCATCAGCTTCTATGCAGGACGTTCAGCAGTGGCTTCATAAGAACAGGTTCAACTCCTATTGCCggatttttacacatttctcaGgttCTGATCTACTGAAGTTGACTCGTGAAGATTTGGTCCAGATCTGTGGGCCAGCTGATGGGATCCGTCTTTACAATGCACTAAAATCAAGAGCGGTTAGACCTCGGCTGACTGTGTACGTGTGTCAGGAGATGTCCCACGCGGAGAGCCCTCTGCTGGAGCGACGCTGCCACAGCAAGAACAGAGAGCTTGACAGTCCCACAGCCCTACATGTTTACCATGCGCTGTACCTCGAGGAGATGACCGCTTCTGAGCTGACCAGAAAAATATCCAACGTGTTGAGCCTGCCACTAACCCACATTAACCAAGTGTACAGGCAGGGCCCCACAGGAATACACATACTGCTCAGTGACCAGATGGTGTCCAATTTCCTTGATGAAAGCTGCTTCGCTGTCAGTACATTAAAAGATGATACAGGTGACAGATTCCATCTGGTTCTGAAGTAGCTCCAGCAGAAGAATAAGCTGAAGAAGGCGATGTGATGACATCACTGAGGTTCCTCACTGCCGTTTGTTCTTGAGCACTGAAGATGCTCCCTCCatccttctctttctccatctctctgtctgtctctctctatctctctttgtctcCATGCCTGacgcaagaaagagagaggctgaGCAGAGGTTGACTGAGACCTCCTAACTGTTAGAATCTGACTTAAGCGTGTAACTTGTTTCATATTGAAAACACTTAAACTGATGGTTGCATGGGGGGGTGGggttgtgtgtgagagggaaGATGGAGGGagggctctgtgtgtgtgtgtctgattttTAAGCTGTAATGGGAGAGAATGGTAGATCAGGAAGGAAGGGAGGGATAGAAACCAGAAGACTACTCTTGATGATGAAGCTTTCTCCCTTCTGCGTGAGCAGGGTACTCATGGACAGTCCTGACTGACGGGGCAGTTTCCAAACTCTGTGGCCAGACGGTCGTCCACACTCGGGACAAAACTTGCCCTCGCTTCGTAGTTTGGTGACAGTACAGtcttcacttgaatagtttacTATGTCTGTAATAGTGGCTGTGCTGTTTGATTGCCTGCCATAGATGTCTATCAAAAAAAGGACTGCACTTTttagtaccttttttttttcctgacgcAGGACACGGTTGTGTTGTGTCGTGCACAGACAAAATGATTCCTGTGTGCGTGTGATCACCTGTCACTAGTTATCCACTTTTGGAGATCTGCATATTGGGCAgtgtttcccttttttttaatttttttttttttgcataaacgATGATGCTGCTTTGTCTGCGTCTCCTACCAAGACCAATCATCTCTGGTGCCATAAAGAACTGTTTACTAGATTCTGTTACACGGTAGCATCTGAGGACTGGTGGCATTTTTACTTTGTATTTCTTTGGGTTGAATTAATCAGCCAAATGAAATAAGTGGAGTTTAGTCCTCTTGCAGTGACTTGTCAGAAGCTGGCATGATGATATCTGTTCATTCTTTTTTGTTCAGTGTCTAGAGCTGTAATAGAAGGCAGGGAATAATCAAAATAACATGTAAAACAGATAGAACTACAGATGTCTATAACTgttaaatatatctatatattactTCTGTCACTTCCCCTTGGAATAAAGGTGGAGGATTTGTCCAGAGAGCCCTATAAGTGTTTATATGTCACCTGCTGCAGCTATATGTAGCctagcagcagccaatcagggcAGGCTCtgtgtgatttcttttttttattattattattatttgtattttattttcctcGTTAGAGACTGATTTGATTGGTTATCTCAGTAGTTCAGCATTGGGCAGCTGTGCTTTGGCATGTACTGTTTGTTTGCCATTAAAGCATGAAGGGCAGGAATGTTGCCCTCAGTAAATATGAATACGAAAAACGACCAAGACTGCACTGACGCAAACATACAAGAGCACCGCTCTGTTGGACGTGCTGATGTACTGATGTACTTACCGATGTAATGCGCTTGATCCTAATGGGGTGTAGGCCGTGTTTACCCACCCTCCACGATTCTCTACAGGGGGAAATGAACAAAGTGAGATGTTGAGATGCCTCGACTGCTCTCGTCCTCTGTGGATGGTGTGGACTGTCCTATGTGTTTCCATGACCGCAGTTATGGTACCTCCATATCACTGTGTCTGAAGGGAGCTTCTCTTGTATTGAGGATGCTGGGATGTACACACTTCATGCCTGTAccagaaataaagtaattttaataCA

Function

GO: NA

KEGG:

id description
K09275 TFCP2; transcription factor CP2 and related proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272200 lncRNA upstream 95536 28770134 ~ 28782034 (+) True G200511
TU272159 lncRNA upstream 132246 28703778 ~ 28745324 (+) False G200482
TU272169 lncRNA upstream 139244 28736851 ~ 28738326 (+) True G200490
TU272165 lncRNA upstream 148614 28726065 ~ 28728956 (+) True G200488
TU272156 lncRNA upstream 166737 28703778 ~ 28710833 (+) False G200482
TU272429 lncRNA downstream 114471 29018573 ~ 29019097 (+) True G200628
TU272650 lncRNA downstream 558059 29462161 ~ 29467157 (+) True G200780
TU272652 lncRNA downstream 558059 29462161 ~ 29467527 (+) False G200780
TU272661 lncRNA downstream 580838 29484940 ~ 29485686 (+) True G200785
TU272676 lncRNA downstream 623961 29528063 ~ 29568073 (+) False lypla2
XM_022683252.1 mRNA upstream 3303 28808329 ~ 28874267 (+) True clasp2
XM_022683253.1 mRNA upstream 3303 28808329 ~ 28874267 (+) False clasp2
XM_022683263.1 mRNA upstream 3303 28808329 ~ 28874267 (+) False clasp2
XM_022683264.1 mRNA upstream 3303 28808329 ~ 28874267 (+) False clasp2
XM_022683255.1 mRNA upstream 3303 28808329 ~ 28874267 (+) False clasp2
XM_007245663.3 mRNA downstream 2420 28906522 ~ 28921254 (+) True pdcd6ip
XM_007245664.3 mRNA downstream 2506 28906608 ~ 28921254 (+) False pdcd6ip
XM_022683285.1 mRNA downstream 28214 28932316 ~ 28952514 (+) False arpp21
XM_022683284.1 mRNA downstream 28222 28932324 ~ 28952514 (+) False arpp21
XM_022683283.1 mRNA downstream 28223 28932325 ~ 28952514 (+) True arpp21
TU271959 other upstream 681372 28193574 ~ 28196198 (+) True G200341
TU271914 other upstream 894220 27981513 ~ 27983350 (+) False LOC103032101
TU271825 other upstream 1058920 27815336 ~ 27818650 (+) True G200235
trnai-uau_9 other upstream 1386540 27490937 ~ 27491030 (+) True trnai-uau_9
trnai-uau_8 other upstream 1387434 27490043 ~ 27490136 (+) True trnai-uau_8
TU272690 other downstream 647034 29551136 ~ 29552883 (+) False eloa
TU273012 other downstream 2105824 31009926 ~ 31012165 (+) False rbm24
TU273004 other downstream 2108609 31012711 ~ 31015045 (+) True G201018
trnaq-uug_6 other downstream 2526445 31430547 ~ 31430618 (+) True trnaq-uug_6
trnar-acg_20 other downstream 2526849 31430951 ~ 31431023 (+) True trnar-acg_20

Expression Profile