RNA id: XM_022683283.1


Basic Information

Item Value
RNA id XM_022683283.1
length 2910
RNA type mRNA
GC content 0.49
exon number 20
gene id arpp21
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 28932316 ~ 28952514 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cgtgcgcgcgcGCGCACTTCACAGCGGCAGCAGCACTGGGTGTAGGCTGGAGCGCGTgcgtgcttgtgtgtgtatttattagcTCGTGCTGAGAGCGCGAGCAGGGCCAGAGCCTGTCAGAAACAACAGTGAGCAGTTCGAGGCCTGACTGTCCTTTACTCACCTCCTCTAACTGGGAACTGTGGTCAGCAGCTCTCCACACGGATCCGacccaccatcaccatcatcagcTCGCGTTCTGACATGGGAATGTGAAGATGTACAGCCATGCTCAATCAGAGGATGCATGAGATTTATGACCTGTGACTTTCACAACCTGTCTGTCTGGTGTGGAAAGTGAGGAGAAAACTTATTTCCCAGCGTCTATCATGAGCAGGGAGACGTCACCCACATGCTGTATCATGGAACCGACAGAGGAGGGTGGCCCTGAGTGCAGCCTGGTGGAGCAGCAGACATGTTCTTCTGCTGAACAACAGGACTCAGATGCTGACCATAGACAAGCTAAAAAGATACAGAAGTCTAAAGGAAAACTGATTAGGAGTGTAGCTGTTTGCGAGGAGTCTTTACCCTCTGAATTCAACAGCAAGGAGTCGGAGGTGGAAACTATTGCAACAGCTGAAAATGCTGGCAGCTTAGAATTGGATGAGGATGAACAAAGGAGACACAAGGAGGGCAGCACACGGAAAAAGCCCAGCTTATCCAAAGAATCAAGTCTGGAATACACCGACTCCACAGGCATAGATCTGGAAGAGTTTCTGATCACTACTCTAAAGAGCAGCCCCAGAGACAGACTGATGCTGCTGAAACTGGAGCAAGACATGACTGATTTTATGACAGACAACTGCTCCTATAAGAAGTTCCCTCAGATGTCGTCCTATCACAGGATGCTGGTTCACAGAGTTGCGGCTTATTTTGGGCTGGAGCACAACGTGGATCACAGTGGAAAAGCTGTGATCATCAACAAAACCAGCAATTCCAGAATACCAGAGCAGCGATTTGCTGAGCATGTTCAGGAGGAAAAGGCTGAGGAGAGAAGGTCAATACTGAAGAGAGACAGCAGCCAGGAGAAAGAGGACATCCAGCGGAGGGTGCCTTTACTGAAGGAACAGGCGAAGAGTAAGTCTcttgaagagagagaggaggagtatcagagagcgagagagcgaatCTTCTCTCAGGATTCATCCTGTGCTCCTAAAAGTGTTTACATTGAGACCAGAGTCTCAGAGGACTGCTATAATTTGCACAGTGAGACTCAAAGAAAAAGACAGCTTTTCAGtaaaacGAAGGATGGGTCTGGGCGGCTGTCAGGCAGCATGCAGAGCAGTTTTGAACAGGAGTGTTACTGGAGTGACTGCCGACCCTGGAGCAGCACAGACTCCGACAGCTCCACATGGACCTCCAAACCCCTGCACTCGCGCTCAGACAGCAGCTCCAAGCTTTACAAACCAGTGTCAGAGGCAGGGGCTACCAGTGGTCCTCTATCAGCAGCTCCAGCAAGTAACAGCCCTGCTTATATCATTGTGCCCCCAGAATCCTCCATACTTCCTGGCAGTATTCTAATTAACCCACACACAGGACAGCCATATCTGAATCCTGATGGAACGCCAGCTGTTTACAATCCACCAGCGAATCAGCAGCCAATGAGTAATCAACTTAACACAATGCAGCCACAAGCCCCACCCCCTccacaccagcagcagcagccgatGACGACTCATGGTGTTCCACAATACTCTACTGTAACGTACCTTCCACCACAGCAGATGTTAAACCCCTCACAGCTCCACCCACCAGAACAGTGTagGGAGGATCTTTCATCTCAGttcagtcacatgacactgaACCACCAGTCGTCAGCTGAGTCCTTAGATCCTCCTGCCTGTTACCTACAGGGAGCACACAGCTATGCACAACCCCAGCACAGTTATGCTGCACCGTTTCCTGTAGACAGCTACCTAAACTCAGGAATGGCTTTGGCCCCTCCTACAGCCCCGCCCCTGCAAACCTGCAGCCAGCAGAACACTCAGGCCTCAGTGTACAGTTACCCAGCTCAGTGTCCCAACTCACTGCAACAGTATGGACCAGCCAGTTACAGCACACAGACAGGATATCCTCCTCTCTTACCCAATCAGCAACAAGCTTACTCAAGCATGGTGGGAACTCAGGTGCTACCCCAAACTCAGCAAAGCATCATGGGTACCTacccttcctcctcctcttatCAGATGGCACCCCAGCTCCAGCCATACTCTACAATGCTGGTGCCCAGGCAGGGTGGGCAGTCTCAGAGTGCAGCGCCGCCAGCTGGAGTATCGGTGTATTGCAACACTCTGCCTCCTTCACCACCCCCACCAGTCAGCAGCCTGGCAGTCACCTGCCAATCAAGCAACTGCAGAAACGCATGTAATAGAAACCAGAACCAGTGCTGGTActaacacaaatacacacacacactcgcacatacCTGCACAGTGTGCCACACTGACTTGAATTACATGCACAGATACGGACATATGAATAAACCAGAGAGACTCACTGTTTACTACTCTTTAGTACACCAACCAAAAATAGACAGTGGTGAGTGTTTCAGGGTAGACCACCCACAGTCTAGTAGCATCAAACTACCTACCTGCCACACCTACCACATCACCAGGACAGTCCAGACACACCCAACCTTTTCTACACATGTGCCATTTTAATTACAACATGTTtatttgtgacttttttttacatgcactgatgtactgtatattatataatgttgTGCCAGAATTGCTGTGATTCTCTTCAGGTTATATTTGATATTATAgtaatatgtgttttaaagCTATATAATAAAAGTTATAACATATCCTGTATTGATGTGATTGTTAATTTAatccataaataaaatatataagataaGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272200 lncRNA upstream 150291 28770134 ~ 28782034 (+) True G200511
TU272159 lncRNA upstream 187001 28703778 ~ 28745324 (+) False G200482
TU272169 lncRNA upstream 193999 28736851 ~ 28738326 (+) True G200490
TU272165 lncRNA upstream 203369 28726065 ~ 28728956 (+) True G200488
TU272156 lncRNA upstream 221492 28703778 ~ 28710833 (+) False G200482
TU272429 lncRNA downstream 66059 29018573 ~ 29019097 (+) True G200628
TU272650 lncRNA downstream 509647 29462161 ~ 29467157 (+) True G200780
TU272652 lncRNA downstream 509647 29462161 ~ 29467527 (+) False G200780
TU272661 lncRNA downstream 532426 29484940 ~ 29485686 (+) True G200785
TU272676 lncRNA downstream 575549 29528063 ~ 29568073 (+) False lypla2
XM_007245663.3 mRNA upstream 11071 28906522 ~ 28921254 (+) True pdcd6ip
XM_007245664.3 mRNA upstream 11071 28906608 ~ 28921254 (+) False pdcd6ip
XM_022683282.1 mRNA upstream 28223 28877570 ~ 28904102 (+) True ubp1
XM_022683277.1 mRNA upstream 58058 28831921 ~ 28874267 (+) False clasp2
XM_007245666.3 mRNA downstream 42370 28994884 ~ 28998485 (+) True LOC103031913
XM_007245669.2 mRNA downstream 54041 29006555 ~ 29015003 (+) True snrnp40
XM_007245670.3 mRNA downstream 68661 29021175 ~ 29034378 (+) True nkain1
XM_007245672.3 mRNA downstream 86857 29039371 ~ 29064155 (+) False pum1
XM_007245671.3 mRNA downstream 86858 29039372 ~ 29064155 (+) True pum1
TU271959 other upstream 736127 28193574 ~ 28196198 (+) True G200341
TU271914 other upstream 948975 27981513 ~ 27983350 (+) False LOC103032101
TU271825 other upstream 1113675 27815336 ~ 27818650 (+) True G200235
trnai-uau_9 other upstream 1441295 27490937 ~ 27491030 (+) True trnai-uau_9
trnai-uau_8 other upstream 1442189 27490043 ~ 27490136 (+) True trnai-uau_8
TU272690 other downstream 598622 29551136 ~ 29552883 (+) False eloa
TU273012 other downstream 2057412 31009926 ~ 31012165 (+) False rbm24
TU273004 other downstream 2060197 31012711 ~ 31015045 (+) True G201018
trnaq-uug_6 other downstream 2478033 31430547 ~ 31430618 (+) True trnaq-uug_6
trnar-acg_20 other downstream 2478437 31430951 ~ 31431023 (+) True trnar-acg_20

Expression Profile