RNA id: trnav-cac_12


Basic Information

Item Value
RNA id trnav-cac_12
length 73
RNA type tRNA
GC content 0.51
exon number 1
gene id trnav-cac_12
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 8937088 ~ 8937160 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttctgtagtgtagtggttatcACGTTCGCCTCACACGCGAAAGGTCCCTGGTTCGAAACCAGGCAGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266361 lncRNA upstream 5729 8931149 ~ 8931359 (+) True G196314
TU266330 lncRNA upstream 87462 8849360 ~ 8849626 (+) True G196286
TU266295 lncRNA upstream 133242 8803118 ~ 8803846 (+) True G196259
TU266293 lncRNA upstream 140702 8792633 ~ 8796386 (+) True G196257
TU266271 lncRNA upstream 156132 8741530 ~ 8780956 (+) True G196238
TU266364 lncRNA downstream 400909 9338069 ~ 9338819 (+) True G196317
TU266381 lncRNA downstream 440757 9377917 ~ 9427544 (+) False G196329
TU266382 lncRNA downstream 440757 9377917 ~ 9427544 (+) True G196329
TU266376 lncRNA downstream 444590 9381750 ~ 9382549 (+) True G196327
TU266492 lncRNA downstream 670362 9607522 ~ 9608821 (+) True G196396
XM_007258225.3 mRNA upstream 65889 8851232 ~ 8871199 (+) True LOC103021572
XM_007258230.2 mRNA upstream 159377 8753398 ~ 8777711 (+) True LOC103022608
XM_022682999.1 mRNA upstream 159377 8756943 ~ 8777711 (+) False LOC103022608
XM_007258232.3 mRNA upstream 197190 8694546 ~ 8739898 (+) True LOC103023428
XM_022682998.1 mRNA upstream 292021 8507235 ~ 8645067 (+) True LOC103040794
XM_022683002.1 mRNA downstream 401957 9339117 ~ 9348717 (+) True LOC103023391
XM_007230568.3 mRNA downstream 597317 9534477 ~ 9539304 (+) False mrps21
XM_022683013.1 mRNA downstream 607540 9544700 ~ 9559107 (+) True LOC111195503
XM_022683011.1 mRNA downstream 623403 9560563 ~ 9590910 (+) True LOC103027509
XM_007230566.3 mRNA downstream 666168 9603328 ~ 9638916 (+) False LOC103046991
trnav-cac_11 other upstream 118 8936898 ~ 8936970 (+) True trnav-cac_11
trnav-cac_10 other upstream 308 8936708 ~ 8936780 (+) True trnav-cac_10
trnav-cac_9 other upstream 498 8936518 ~ 8936590 (+) True trnav-cac_9
TU266265 other upstream 257118 8679284 ~ 8679970 (+) True G196232
TU266158 other upstream 531635 8403598 ~ 8405453 (+) False LOC103033741
trnav-cac_13 other downstream 118 8937278 ~ 8937350 (+) True trnav-cac_13
trnav-aac_11 other downstream 308 8937468 ~ 8937540 (+) True trnav-aac_11
trnav-cac_14 other downstream 498 8937658 ~ 8937730 (+) True trnav-cac_14
trnav-aac_12 other downstream 687 8937847 ~ 8937919 (+) True trnav-aac_12
trnav-cac_15 other downstream 876 8938036 ~ 8938107 (+) True trnav-cac_15