RNA id: trnav-cac_27


Basic Information

Item Value
RNA id trnav-cac_27
length 73
RNA type tRNA
GC content 0.51
exon number 1
gene id trnav-cac_27
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 8945428 ~ 8945500 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttctgtagtgtagtggttatcACGTTCGCCTCACACGCGAAAGGTCCCTGGTTCGAAACCAGGCAGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266361 lncRNA upstream 14069 8931149 ~ 8931359 (+) True G196314
TU266330 lncRNA upstream 95802 8849360 ~ 8849626 (+) True G196286
TU266295 lncRNA upstream 141582 8803118 ~ 8803846 (+) True G196259
TU266293 lncRNA upstream 149042 8792633 ~ 8796386 (+) True G196257
TU266271 lncRNA upstream 164472 8741530 ~ 8780956 (+) True G196238
TU266364 lncRNA downstream 392569 9338069 ~ 9338819 (+) True G196317
TU266381 lncRNA downstream 432417 9377917 ~ 9427544 (+) False G196329
TU266382 lncRNA downstream 432417 9377917 ~ 9427544 (+) True G196329
TU266376 lncRNA downstream 436250 9381750 ~ 9382549 (+) True G196327
TU266492 lncRNA downstream 662022 9607522 ~ 9608821 (+) True G196396
XM_007258225.3 mRNA upstream 74229 8851232 ~ 8871199 (+) True LOC103021572
XM_007258230.2 mRNA upstream 167717 8753398 ~ 8777711 (+) True LOC103022608
XM_022682999.1 mRNA upstream 167717 8756943 ~ 8777711 (+) False LOC103022608
XM_007258232.3 mRNA upstream 205530 8694546 ~ 8739898 (+) True LOC103023428
XM_022682998.1 mRNA upstream 300361 8507235 ~ 8645067 (+) True LOC103040794
XM_022683002.1 mRNA downstream 393617 9339117 ~ 9348717 (+) True LOC103023391
XM_007230568.3 mRNA downstream 588977 9534477 ~ 9539304 (+) False mrps21
XM_022683013.1 mRNA downstream 599200 9544700 ~ 9559107 (+) True LOC111195503
XM_022683011.1 mRNA downstream 615063 9560563 ~ 9590910 (+) True LOC103027509
XM_007230566.3 mRNA downstream 657828 9603328 ~ 9638916 (+) False LOC103046991
trnav-cac_26 other upstream 118 8945238 ~ 8945310 (+) True trnav-cac_26
trnav-aac_39 other upstream 308 8945049 ~ 8945120 (+) True trnav-aac_39
trnav-cac_25 other upstream 497 8944859 ~ 8944931 (+) True trnav-cac_25
trnav-aac_38 other upstream 687 8944669 ~ 8944741 (+) True trnav-aac_38
trnav-aac_37 other upstream 877 8944480 ~ 8944551 (+) True trnav-aac_37
trnav-aac_40 other downstream 118 8945618 ~ 8945690 (+) True trnav-aac_40
trnav-cac_28 other downstream 308 8945808 ~ 8945879 (+) True trnav-cac_28
trnav-aac_41 other downstream 497 8945997 ~ 8946069 (+) True trnav-aac_41
trnav-aac_42 other downstream 687 8946187 ~ 8946259 (+) True trnav-aac_42
trnav-aac_43 other downstream 877 8946377 ~ 8946449 (+) True trnav-aac_43