RNA id: trnav-cac_30


Basic Information

Item Value
RNA id trnav-cac_30
length 72
RNA type tRNA
GC content 0.50
exon number 1
gene id trnav-cac_30
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 8947135 ~ 8947206 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttctgtagtgtagtggttatcACGTTCGCCTCACACGCGAAAGGTCCTGGTTCGAAACCAGGCAGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266361 lncRNA upstream 15776 8931149 ~ 8931359 (+) True G196314
TU266330 lncRNA upstream 97509 8849360 ~ 8849626 (+) True G196286
TU266295 lncRNA upstream 143289 8803118 ~ 8803846 (+) True G196259
TU266293 lncRNA upstream 150749 8792633 ~ 8796386 (+) True G196257
TU266271 lncRNA upstream 166179 8741530 ~ 8780956 (+) True G196238
TU266364 lncRNA downstream 390863 9338069 ~ 9338819 (+) True G196317
TU266381 lncRNA downstream 430711 9377917 ~ 9427544 (+) False G196329
TU266382 lncRNA downstream 430711 9377917 ~ 9427544 (+) True G196329
TU266376 lncRNA downstream 434544 9381750 ~ 9382549 (+) True G196327
TU266492 lncRNA downstream 660316 9607522 ~ 9608821 (+) True G196396
XM_007258225.3 mRNA upstream 75936 8851232 ~ 8871199 (+) True LOC103021572
XM_007258230.2 mRNA upstream 169424 8753398 ~ 8777711 (+) True LOC103022608
XM_022682999.1 mRNA upstream 169424 8756943 ~ 8777711 (+) False LOC103022608
XM_007258232.3 mRNA upstream 207237 8694546 ~ 8739898 (+) True LOC103023428
XM_022682998.1 mRNA upstream 302068 8507235 ~ 8645067 (+) True LOC103040794
XM_022683002.1 mRNA downstream 391911 9339117 ~ 9348717 (+) True LOC103023391
XM_007230568.3 mRNA downstream 587271 9534477 ~ 9539304 (+) False mrps21
XM_022683013.1 mRNA downstream 597494 9544700 ~ 9559107 (+) True LOC111195503
XM_022683011.1 mRNA downstream 613357 9560563 ~ 9590910 (+) True LOC103027509
XM_007230566.3 mRNA downstream 656122 9603328 ~ 9638916 (+) False LOC103046991
trnav-aac_45 other upstream 118 8946946 ~ 8947017 (+) True trnav-aac_45
trnav-cac_29 other upstream 307 8946756 ~ 8946828 (+) True trnav-cac_29
trnav-aac_44 other upstream 497 8946566 ~ 8946638 (+) True trnav-aac_44
trnav-aac_43 other upstream 686 8946377 ~ 8946449 (+) True trnav-aac_43
trnav-aac_42 other upstream 876 8946187 ~ 8946259 (+) True trnav-aac_42
trnav-cac_31 other downstream 118 8947324 ~ 8947396 (+) True trnav-cac_31
trnav-aac_46 other downstream 307 8947513 ~ 8947584 (+) True trnav-aac_46
trnav-cac_32 other downstream 496 8947702 ~ 8947773 (+) True trnav-cac_32
trnav-aac_47 other downstream 685 8947891 ~ 8947962 (+) True trnav-aac_47
trnav-aac_48 other downstream 873 8948079 ~ 8948150 (+) True trnav-aac_48