RNA id: trnav-cac_40


Basic Information

Item Value
RNA id trnav-cac_40
length 73
RNA type tRNA
GC content 0.51
exon number 1
gene id trnav-cac_40
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 8950354 ~ 8950426 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttctgtagtgtagtggttatcACGTTCGCCTCACACGCGAAAGGTCCCTGGTTCGAAACCAGGCAGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266361 lncRNA upstream 18995 8931149 ~ 8931359 (+) True G196314
TU266330 lncRNA upstream 100728 8849360 ~ 8849626 (+) True G196286
TU266295 lncRNA upstream 146508 8803118 ~ 8803846 (+) True G196259
TU266293 lncRNA upstream 153968 8792633 ~ 8796386 (+) True G196257
TU266271 lncRNA upstream 169398 8741530 ~ 8780956 (+) True G196238
TU266364 lncRNA downstream 387643 9338069 ~ 9338819 (+) True G196317
TU266381 lncRNA downstream 427491 9377917 ~ 9427544 (+) False G196329
TU266382 lncRNA downstream 427491 9377917 ~ 9427544 (+) True G196329
TU266376 lncRNA downstream 431324 9381750 ~ 9382549 (+) True G196327
TU266492 lncRNA downstream 657096 9607522 ~ 9608821 (+) True G196396
XM_007258225.3 mRNA upstream 79155 8851232 ~ 8871199 (+) True LOC103021572
XM_007258230.2 mRNA upstream 172643 8753398 ~ 8777711 (+) True LOC103022608
XM_022682999.1 mRNA upstream 172643 8756943 ~ 8777711 (+) False LOC103022608
XM_007258232.3 mRNA upstream 210456 8694546 ~ 8739898 (+) True LOC103023428
XM_022682998.1 mRNA upstream 305287 8507235 ~ 8645067 (+) True LOC103040794
XM_022683002.1 mRNA downstream 388691 9339117 ~ 9348717 (+) True LOC103023391
XM_007230568.3 mRNA downstream 584051 9534477 ~ 9539304 (+) False mrps21
XM_022683013.1 mRNA downstream 594274 9544700 ~ 9559107 (+) True LOC111195503
XM_022683011.1 mRNA downstream 610137 9560563 ~ 9590910 (+) True LOC103027509
XM_007230566.3 mRNA downstream 652902 9603328 ~ 9638916 (+) False LOC103046991
trnav-aac_52 other upstream 117 8950165 ~ 8950237 (+) True trnav-aac_52
trnav-cac_39 other upstream 307 8949975 ~ 8950047 (+) True trnav-cac_39
trnav-cac_38 other upstream 497 8949785 ~ 8949857 (+) True trnav-cac_38
trnav-cac_37 other upstream 687 8949595 ~ 8949667 (+) True trnav-cac_37
trnav-cac_36 other upstream 877 8949405 ~ 8949477 (+) True trnav-cac_36
trnav-cac_41 other downstream 117 8950543 ~ 8950615 (+) True trnav-cac_41
trnav-cac_42 other downstream 307 8950733 ~ 8950805 (+) True trnav-cac_42
trnav-aac_53 other downstream 497 8950923 ~ 8950995 (+) True trnav-aac_53
trnav-cac_43 other downstream 687 8951113 ~ 8951185 (+) True trnav-cac_43
trnav-aac_54 other downstream 877 8951303 ~ 8951375 (+) True trnav-aac_54