RNA id: TU411099


Basic Information

Item Value
RNA id TU411099
length 1076
RNA type TUCP
GC content 0.46
exon number 5
gene id LOC111191161
representative False

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 52791 ~ 67187 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTGGATCTgcttttaatctgttttattctttacaGGAAGAAACGGACTGAAGAGATCGTTTAAAGCTGTTTGGAGTTTTTAGGACTACAGTTTCTGTTCAGGAAGATCCTGGATTCTGGTTTATTCTTCATAAGAAACCTGAAGCTTGGGATTGCTGGACTACAGGGAGTAAAGCGCTGAGTTTAAGTGATCAGAGATCAGAGTGGGGAGCGCAGGTGGAGAGAAAGTGGAGTAGAAGATCATCTGAAGCAGAAGAATCTCTACAGTCAAGAGGCTTCCCACCAGAACCTCACTAGAACCTTACCAGAACCTTACCTGAACTTTACCAGAACTTTACCAGAACTTCACCAGAACTTCACCaggagctcagtagctcatcaGAATGAGTCTAAACCTCTCTAGAGACCTTTGAGTTGAAACTGCCTGCGGATATTTTTACTCTTTggccacctctctctctctctctctctctctctctctctctctctctctctatctctctctctatctctctctctggagaAGAAGAGTAGGACTTTGGATCTGAGCTGCTGATAGCTGGAACTGGCTGGTCTGAAGATTATGGGAGAACTTCAGTTCACTGGGAGTTTGGAAGTGAAGCTCTTTGGGATCCCACAGTTCCCTTTTCATATTTTAGCTGCAGATTCTTAGATTCCAAGATTTTGAAGCACTTGAAGAACAAGGATGCCAAAGTCACAAACCAGGAATCTGTCTTTGTGCCGGTCGCTCATCATCGTTATGCTGTTGGTGTCGCCGGTTTGTCCGTTCTCTCATCAGTCTGAGGTTCAGATTCGCCGGCCGGTCGTCGGCCGTTTGGCTCGGGTTCCACAGCAGCTCTATAATAGGAACGAGTGGACCCCGTGGGCCGGCTGGTCCGAGTGTTCCCGCTCCTGTGGAGGCGGGGCTTCCATCCGAAGACGCACCTGCATCACCAAGAATCCAGTTGGAGCACCGTGTTTAGGTGAACCCAGACAGTATAAAATCTGCAGTAGAGAGGTACAGATCAATATTTCACAACATTAttttatcaattattttatcaataatTTAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411090 lncRNA upstream 3044 40117 ~ 49747 (+) True G298851
TU411095 lncRNA downstream 178 67365 ~ 68786 (+) True G298854
TU411105 lncRNA downstream 6027 73214 ~ 73796 (+) False G298858
TU411106 lncRNA downstream 6027 73214 ~ 73897 (+) False G298858
TU411108 lncRNA downstream 6027 73214 ~ 74634 (+) True G298858
TU411114 lncRNA downstream 28743 95930 ~ 96295 (+) True G298864
XM_007240744.3 mRNA downstream 57089 124276 ~ 126588 (+) True hypk
XM_022665293.1 mRNA downstream 71068 138255 ~ 153748 (+) True vps33b
XM_022665292.1 mRNA downstream 71106 138293 ~ 153748 (+) False vps33b
XM_022665231.1 mRNA downstream 87778 154965 ~ 166097 (+) True prc1
XM_022665291.1 mRNA downstream 100484 167671 ~ 190488 (+) True ttc17
TU411109 other downstream 11293 78480 ~ 78680 (+) True G298859
TU411137 other downstream 87797 154984 ~ 157404 (+) False prc1
TU411298 other downstream 395227 462414 ~ 470620 (+) True G299000
TU411377 other downstream 637973 705160 ~ 706824 (+) True G299046
TU411607 other downstream 1150622 1217809 ~ 1218106 (+) True G299226

Expression Profile