RNA id: TU411106


Basic Information

Item Value
RNA id TU411106
length 286
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id G298858
representative False

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 73214 ~ 74634 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggtgtgatgtgagtgtgatcaggtgtgatgtgagtgtgatTAGGGTTTTCTCCTTGTTCCTCCAGGTTCTGACCCGTGTGAGCTCAGCTGTTTGGCTCTGGGCCACAATTTCTACTATAACTTTGGTCGAGTTCTGGACGGAACGTCGTGCTCAGAGGAGCCCGGAGCCGCCTGTGTGAACGGAAGATGCCTGGTGAGTAACAACTGAGGTGGAGATGAGATGAGGAGATGGAGATGAGGTGAGGGAGATGGAGATGAGGTGAGGGAGGTGGAGATGAGGTGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411095 lncRNA upstream 4428 67365 ~ 68786 (+) True G298854
TU411100 lncRNA upstream 7460 52791 ~ 65754 (+) False LOC111191161
TU411114 lncRNA downstream 22033 95930 ~ 96295 (+) True G298864
TU411116 lncRNA downstream 24550 98447 ~ 98670 (+) True G298866
TU411129 lncRNA downstream 41438 115335 ~ 115549 (+) True G298875
TU411118 lncRNA downstream 60819 134716 ~ 135216 (+) False G298868
TU411119 lncRNA downstream 60819 134716 ~ 135216 (+) True G298868
XM_007240744.3 mRNA downstream 50379 124276 ~ 126588 (+) True hypk
XM_022665293.1 mRNA downstream 64358 138255 ~ 153748 (+) True vps33b
XM_022665292.1 mRNA downstream 64396 138293 ~ 153748 (+) False vps33b
XM_022665231.1 mRNA downstream 81068 154965 ~ 166097 (+) True prc1
XM_022665291.1 mRNA downstream 93774 167671 ~ 190488 (+) True ttc17
TU411098 other upstream 6027 52791 ~ 67187 (+) False LOC111191161
TU411109 other downstream 4583 78480 ~ 78680 (+) True G298859
TU411137 other downstream 81087 154984 ~ 157404 (+) False prc1
TU411298 other downstream 388517 462414 ~ 470620 (+) True G299000
TU411377 other downstream 631263 705160 ~ 706824 (+) True G299046
TU411607 other downstream 1143912 1217809 ~ 1218106 (+) True G299226

Expression Profile