RNA id: TU411109


Basic Information

Item Value
RNA id TU411109
length 201
RNA type TUCP
GC content 0.59
exon number 1
gene id G298859
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 78480 ~ 78680 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATGTGGTGATGGTGAGcgtggtggttggtgtggtggttggtgtggtggtgagcatggtggttggtgtggtggttggtgtggtggtgAGCGTGATGGTGAGcgtggtggttggtgtggtggtgAGCGTGGTGATTGGTGTGGTGGTGAATGTGGTGATGGTGAGcgtggtggttggtgtggtggtgagcgtggtggtggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411108 lncRNA upstream 3846 73214 ~ 74634 (+) True G298858
TU411106 lncRNA upstream 4583 73214 ~ 73897 (+) False G298858
TU411105 lncRNA upstream 4684 73214 ~ 73796 (+) False G298858
TU411095 lncRNA upstream 9694 67365 ~ 68786 (+) True G298854
TU411100 lncRNA upstream 12726 52791 ~ 65754 (+) False LOC111191161
TU411114 lncRNA downstream 17250 95930 ~ 96295 (+) True G298864
TU411116 lncRNA downstream 19767 98447 ~ 98670 (+) True G298866
TU411129 lncRNA downstream 36655 115335 ~ 115549 (+) True G298875
TU411118 lncRNA downstream 56036 134716 ~ 135216 (+) False G298868
TU411119 lncRNA downstream 56036 134716 ~ 135216 (+) True G298868
XM_007240744.3 mRNA downstream 45596 124276 ~ 126588 (+) True hypk
XM_022665293.1 mRNA downstream 59575 138255 ~ 153748 (+) True vps33b
XM_022665292.1 mRNA downstream 59613 138293 ~ 153748 (+) False vps33b
XM_022665231.1 mRNA downstream 76285 154965 ~ 166097 (+) True prc1
XM_022665291.1 mRNA downstream 88991 167671 ~ 190488 (+) True ttc17
TU411098 other upstream 11293 52791 ~ 67187 (+) False LOC111191161
TU411137 other downstream 76304 154984 ~ 157404 (+) False prc1
TU411298 other downstream 383734 462414 ~ 470620 (+) True G299000
TU411377 other downstream 626480 705160 ~ 706824 (+) True G299046
TU411607 other downstream 1139129 1217809 ~ 1218106 (+) True G299226
TU411618 other downstream 1245740 1324420 ~ 1324854 (+) True G299236

Expression Profile