RNA id: TU411121


Basic Information

Item Value
RNA id TU411121
length 427
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G298868
representative False

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 134716 ~ 135216 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccactgatgtaattattaaaatctttatttcctGGATATCAGCAGGATTTACAGAGTAAATTATAACACATATTATTACATTTCTAAGTACAGTACATGGTCTGGACTTTACAGcaataaagagaagagaagtgaGAGCCCTGAGAacagtatagagtatagagtgtagagtagagtaaagagtagagtagagtatagagtagagtagagtatagagtaaagagtatagagtagagtatagagtaaagactatagagtagagtatagagtatagagTATAGATGAGTACAGGGGTGAATTAGAGTTAGATCTTGACGCCTCTCTCAGTGAAGAGCTGCTGCAGTTTTTCCTCCAGAACCGGATTCGTCCCACGCAGTCCTTTCACCACCTGCCCCGCCCACAGGAAGTACTCCTGAACCCGCTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411129 lncRNA upstream 19167 115335 ~ 115549 (+) True G298875
TU411116 lncRNA upstream 36046 98447 ~ 98670 (+) True G298866
TU411114 lncRNA upstream 38421 95930 ~ 96295 (+) True G298864
TU411108 lncRNA upstream 60082 73214 ~ 74634 (+) True G298858
TU411106 lncRNA upstream 60819 73214 ~ 73897 (+) False G298858
TU411136 lncRNA downstream 10760 145976 ~ 146693 (+) True G298880
TU411150 lncRNA downstream 75742 210958 ~ 212769 (+) True G298890
TU411166 lncRNA downstream 160987 296203 ~ 331116 (+) True G298903
TU411294 lncRNA downstream 304697 439913 ~ 440117 (+) True G298997
TU411305 lncRNA downstream 335646 470862 ~ 473103 (+) True G299003
XM_007240744.3 mRNA upstream 8128 124276 ~ 126588 (+) True hypk
XM_022665293.1 mRNA downstream 3039 138255 ~ 153748 (+) True vps33b
XM_022665292.1 mRNA downstream 3077 138293 ~ 153748 (+) False vps33b
XM_022665231.1 mRNA downstream 19749 154965 ~ 166097 (+) True prc1
XM_022665291.1 mRNA downstream 32455 167671 ~ 190488 (+) True ttc17
XM_022665230.1 mRNA downstream 97590 232806 ~ 261021 (+) True LOC103024613
TU411109 other upstream 56036 78480 ~ 78680 (+) True G298859
TU411098 other upstream 67529 52791 ~ 67187 (+) False LOC111191161
TU411137 other downstream 19768 154984 ~ 157404 (+) False prc1
TU411298 other downstream 327198 462414 ~ 470620 (+) True G299000
TU411377 other downstream 569944 705160 ~ 706824 (+) True G299046
TU411607 other downstream 1082593 1217809 ~ 1218106 (+) True G299226
TU411618 other downstream 1189204 1324420 ~ 1324854 (+) True G299236

Expression Profile