RNA id: XM_022665231.1


Basic Information

Item Value
RNA id XM_022665231.1
length 1840
RNA type mRNA
GC content 0.51
exon number 13
gene id prc1
representative True

Chromosome Information

Item Value
chromosome id NW_019172830.1
NCBI id APWO02000048.1
chromosome length 5891159
location 154965 ~ 166097 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTTGAATCAGAGAGAAGCGGCGGAGGAACGGCCGGAACACCTTCTCCCCTAAACCCGCACTGATcactgtattaatattaataataataatattcttaatattaataatataaccCGCACAGCCTGCAGATCAGCGATACAACCAGCATGAGGAAAAGTGAGGTGCTGGCGGCCGAGTCGGTGGCGTGTCTGAATAAAGCTCTGTGTCACCTGAAGGACATCTGGGAGGAGATCGGGATCCCGGAGGAACAGAGGCTGGAGAGAACCAATGTGGTTAAAAACCatattaaaGATCTTCTGGAGAGGATGATCGCAGAGGAGGAGAACCTGAGGAAGCGTCTGATGATCAGTATCGAGACCTGCCGTAAAGAACTCAGCAAGGTGTGCTCTGAGCTGCAGCTACCTGCCTTCCAGGAGGAGAGGAGTAACTCGATGCTGCAGCAGGAGAAAGATATCAGGACGTTTCTGGAGGCGATGCTGAAGGAGAAGAGTCACAGGATGCAGACGCTGAAAGTCCTGATAGAGCAGGACCAGGACCTGTGTGATGTTCTGTGTTGTGATTCGTTCTGTATCTCGGACAGTTCTGTTCCCTCACTCGAGCAGCTGGAGCGCTATCGCGAGCACCTCGCCGCTCTCGCCGCGGAAAAGGAAGAAAGGCGCAGTAAATTTGTTGAACTGAAGAAGAAGATAATTCTCTGTATGGAGGATCTGGATCAGCTTCCTGAGACCAGTTTTGAGAAGGACATCGTTTGTGAGGAAGAGGAAGCGTTCTGTCTCTCCAGAGAAAACATCGACTCCCTGAAAATCCTGCTTCACCAGGTACTCCATGATTTCAGTGAAGAGCTGCTGAGTCTGCACGACGCTGAGATCCTGagattaaagcagcattatgaaGAACATAAAGATCTGTTTGAAGGGGTTCAGAGGTGGGAGGAGAGCTGGAGACTGTTCCTGGAGCTGGAGAAAAAAGCTACAGATCCCTCCAGATTCACGAACAGAGGAGGAAATCTCCTTAAAGAGGAGAAACAGAGAACTGATCTACTGAAGAGCCTCCCGAAGTTGGAGAAGAAGCTGAAGCTGCAGGTGGAGCAGTGGGAGGAGCAGCAGGGTCGGGAGTTTCTGGTTGGGGGTCAGAAGTTCCTGCAGTTTGTTGGGGAGCAGTGGGAGCAGCACCGCCTGGAGAAAGAGCGCGAGAAACAGGAAcggCAACTGAAGAAGAGCAAACAGACGGAGGAGGACATGCTGTACGGCACCGCCGTCCGAACGCCCACTAAACGCAGATTCCTCGGCAGCGCCACTCCCTGCAAAACTCGCAAACTGAACGgcaccagcagcaccaccaACAGCACCATACGCTCCGCCCTCAGCTCCGCCCACATCACCGTCTGCCACTCCCCCCTGTCCCGCCCCCCAATCTCAGCCAGCAAGGGAGCTGCAGTTCGGACGCCCGGTCGTGGGAAACCCCCCCATCCTGCACTGCTGGAGAGGAATAAGGAGAATATTGGATTCGGTAACCCCGCCGCCGTGGTCAGTTCCAGCCCTCAGCGTAACCACAGTATTAACTCTGTCGCCAGCACATACTCAGAGTTCGCGGGGGTAGTGAGCGCTGACTCCGGGGAGAGCGAGATCTCTGCAAAGCCTCTAAATCAAAGTGCACACCAGACGTCCTGAATTCCACCATCACACACCTCTGACTGCACACCCAATACACTAATCAATAATTCCGGGATCAGCAAATACTGCATCGCATGATCAATATCGGAAAGCTTTGATCATCACGATTTGAATTTGTGTGTTATTTAGCATTTGATGTGTAAATAAaggtaatatatatttaa

Function

GO:      GO:0044763

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411136 lncRNA upstream 8272 145976 ~ 146693 (+) True G298880
TU411118 lncRNA upstream 19749 134716 ~ 135216 (+) False G298868
TU411119 lncRNA upstream 19749 134716 ~ 135216 (+) True G298868
TU411120 lncRNA upstream 19749 134716 ~ 135216 (+) False G298868
TU411121 lncRNA upstream 19749 134716 ~ 135216 (+) False G298868
TU411150 lncRNA downstream 44861 210958 ~ 212769 (+) True G298890
TU411166 lncRNA downstream 130106 296203 ~ 331116 (+) True G298903
TU411294 lncRNA downstream 273816 439913 ~ 440117 (+) True G298997
TU411305 lncRNA downstream 304765 470862 ~ 473103 (+) True G299003
TU411309 lncRNA downstream 333118 499215 ~ 499615 (+) True G299006
XM_022665293.1 mRNA upstream 1217 138255 ~ 153748 (+) True vps33b
XM_022665292.1 mRNA upstream 1217 138293 ~ 153748 (+) False vps33b
XM_007240744.3 mRNA upstream 28377 124276 ~ 126588 (+) True hypk
XM_022665291.1 mRNA downstream 1574 167671 ~ 190488 (+) True ttc17
XM_022665230.1 mRNA downstream 66709 232806 ~ 261021 (+) True LOC103024613
XM_022665247.1 mRNA downstream 317673 483770 ~ 499002 (+) True LOC111191160
XM_022665265.1 mRNA downstream 523160 689257 ~ 701417 (+) True LOC103040103
XM_022665233.1 mRNA downstream 699136 865233 ~ 950940 (+) True LOC103023516
TU411109 other upstream 76285 78480 ~ 78680 (+) True G298859
TU411098 other upstream 87778 52791 ~ 67187 (+) False LOC111191161
TU411298 other downstream 296317 462414 ~ 470620 (+) True G299000
TU411377 other downstream 539063 705160 ~ 706824 (+) True G299046
TU411607 other downstream 1051712 1217809 ~ 1218106 (+) True G299226
TU411618 other downstream 1158323 1324420 ~ 1324854 (+) True G299236
TU411691 other downstream 1396791 1562888 ~ 1566694 (+) False LOC103047296

Expression Profile